More than 300 homologs were found in PanDaTox collection
for query gene Mext_0280 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_0280  HAD family hydrolase  100 
 
 
233 aa  472  1e-132  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0323  HAD-superfamily hydrolase, subfamily IA, variant 1  99.14 
 
 
233 aa  468  1.0000000000000001e-131  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0341719 
 
 
-
 
NC_010725  Mpop_0356  HAD-superfamily hydrolase, subfamily IA, variant 1  90.95 
 
 
233 aa  434  1e-121  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0854  HAD family hydrolase  65.85 
 
 
221 aa  283  1.0000000000000001e-75  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.249022  decreased coverage  0.000200034 
 
 
-
 
NC_010511  M446_6369  HAD family hydrolase  65.26 
 
 
219 aa  267  1e-70  Methylobacterium sp. 4-46  Bacteria  normal  0.23133  normal  0.167912 
 
 
-
 
NC_011894  Mnod_7122  HAD-superfamily hydrolase, subfamily IA, variant 1  65.22 
 
 
219 aa  256  1e-67  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1313  HAD family hydrolase  53.95 
 
 
232 aa  225  4e-58  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.95229 
 
 
-
 
NC_011666  Msil_2100  HAD-superfamily hydrolase, subfamily IA, variant 1  55.56 
 
 
215 aa  225  5.0000000000000005e-58  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009720  Xaut_4762  HAD family hydrolase  56.1 
 
 
242 aa  215  5e-55  Xanthobacter autotrophicus Py2  Bacteria  normal  0.698376  hitchhiker  0.00269567 
 
 
-
 
NC_009719  Plav_2768  HAD family hydrolase  48.43 
 
 
237 aa  187  1e-46  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.654297  normal  0.45248 
 
 
-
 
NC_009952  Dshi_0316  phosphoglycolate phosphatase  50.23 
 
 
226 aa  184  1.0000000000000001e-45  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.547041 
 
 
-
 
NC_004310  BR1002  HAD superfamily hydrolase  43.26 
 
 
221 aa  181  1e-44  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0968  HAD superfamily hydrolase  43.26 
 
 
221 aa  181  1e-44  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2658  haloacid dehalogenase-like hydrolase  46.61 
 
 
236 aa  180  1e-44  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0791  HAD family hydrolase  48.26 
 
 
220 aa  172  5e-42  Paracoccus denitrificans PD1222  Bacteria  normal  0.226537  normal 
 
 
-
 
NC_011989  Avi_2262  hydrolase  43.87 
 
 
223 aa  172  5e-42  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0625  HAD family hydrolase  49.21 
 
 
221 aa  171  5.999999999999999e-42  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2711  HAD family hydrolase  44.86 
 
 
230 aa  171  9e-42  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0292  HAD family hydrolase  49.48 
 
 
222 aa  169  3e-41  Ruegeria sp. TM1040  Bacteria  normal  0.402537  normal  0.982934 
 
 
-
 
NC_009667  Oant_2085  HAD family hydrolase  41.94 
 
 
223 aa  166  2e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2839  HAD family hydrolase  47.44 
 
 
218 aa  162  4.0000000000000004e-39  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0722376  n/a   
 
 
-
 
NC_009636  Smed_1018  HAD family hydrolase  40.1 
 
 
221 aa  160  2e-38  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.76802 
 
 
-
 
NC_008347  Mmar10_1760  HAD family hydrolase  42.51 
 
 
260 aa  160  2e-38  Maricaulis maris MCS10  Bacteria  normal  0.960773  normal  0.487326 
 
 
-
 
NC_011369  Rleg2_1883  HAD-superfamily hydrolase, subfamily IA, variant 1  42.86 
 
 
217 aa  158  6e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00501827  normal  0.0218555 
 
 
-
 
NC_012850  Rleg_2085  HAD-superfamily hydrolase, subfamily IA, variant 1  42.36 
 
 
217 aa  157  1e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0330594  normal  0.304125 
 
 
-
 
NC_007802  Jann_0734  HAD family hydrolase  40.59 
 
 
241 aa  147  2.0000000000000003e-34  Jannaschia sp. CCS1  Bacteria  normal  0.879574  normal 
 
 
-
 
NC_007947  Mfla_1323  HAD family hydrolase  40.57 
 
 
218 aa  141  9.999999999999999e-33  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00010916  normal  0.934661 
 
 
-
 
NC_007484  Noc_0178  HAD family hydrolase  39.09 
 
 
230 aa  139  3.9999999999999997e-32  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.000756614  n/a   
 
 
-
 
NC_007404  Tbd_1562  putative hydrolase  37.68 
 
 
218 aa  134  1.9999999999999998e-30  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.320439  normal  0.240105 
 
 
-
 
NC_008700  Sama_1987  HAD family hydrolase  39.61 
 
 
215 aa  130  2.0000000000000002e-29  Shewanella amazonensis SB2B  Bacteria  normal  0.0143235  normal  0.0109237 
 
 
-
 
NC_010524  Lcho_0590  HAD family hydrolase  39.91 
 
 
219 aa  128  9.000000000000001e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0419315 
 
 
-
 
NC_010501  PputW619_1518  HAD family hydrolase  34.72 
 
 
226 aa  127  1.0000000000000001e-28  Pseudomonas putida W619  Bacteria  hitchhiker  0.0020263  normal 
 
 
-
 
NC_009439  Pmen_1621  HAD family hydrolase  38.1 
 
 
231 aa  125  4.0000000000000003e-28  Pseudomonas mendocina ymp  Bacteria  normal  0.0638141  normal 
 
 
-
 
NC_002947  PP_1907  HAD superfamily hydrolase  35.19 
 
 
224 aa  125  6e-28  Pseudomonas putida KT2440  Bacteria  normal  unclonable  0.00000027861 
 
 
-
 
NC_008576  Mmc1_1778  HAD family hydrolase  38.1 
 
 
222 aa  125  7e-28  Magnetococcus sp. MC-1  Bacteria  normal  0.0979226  decreased coverage  0.0000822361 
 
 
-
 
NC_009512  Pput_3807  HAD family hydrolase  35.19 
 
 
224 aa  124  1e-27  Pseudomonas putida F1  Bacteria  normal  0.118188  normal 
 
 
-
 
NC_010322  PputGB1_1483  HAD family hydrolase  34.26 
 
 
224 aa  123  3e-27  Pseudomonas putida GB-1  Bacteria  normal  0.0762089  normal 
 
 
-
 
NC_011138  MADE_02338  putative phosphoglycolate phosphatase, contains a phosphatase-like domain  36.19 
 
 
234 aa  123  3e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0463297  n/a   
 
 
-
 
NC_003910  CPS_2291  HAD family hydrolase  37.38 
 
 
218 aa  122  4e-27  Colwellia psychrerythraea 34H  Bacteria  normal  0.265516  n/a   
 
 
-
 
NC_010531  Pnec_0398  HAD-superfamily hydrolase, subfamily IA, variant 1  37.33 
 
 
226 aa  121  9e-27  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2434  HAD-superfamily hydrolase, subfamily IA, variant 1  38.1 
 
 
218 aa  121  9.999999999999999e-27  Thauera sp. MZ1T  Bacteria  normal  0.282448  n/a   
 
 
-
 
NC_009656  PSPA7_2187  putative hydrolase  37.7 
 
 
230 aa  120  1.9999999999999998e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0143931  n/a   
 
 
-
 
NC_007005  Psyr_1640  HAD family hydrolase  36.36 
 
 
220 aa  120  1.9999999999999998e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.284861 
 
 
-
 
NC_009379  Pnuc_0391  HAD family hydrolase  38.1 
 
 
229 aa  119  3.9999999999999996e-26  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3288  HAD family hydrolase  37.21 
 
 
222 aa  119  6e-26  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2641  HAD-superfamily hydrolase, subfamily IA, variant 1  37.74 
 
 
222 aa  118  7e-26  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3839  HAD-superfamily hydrolase  36.9 
 
 
220 aa  118  9.999999999999999e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0865807  n/a   
 
 
-
 
NC_007347  Reut_A2273  HAD family hydrolase  38.79 
 
 
219 aa  117  9.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.768763  n/a   
 
 
-
 
NC_011901  Tgr7_1355  HAD-superfamily hydrolase, subfamily IA, variant 1  37.5 
 
 
228 aa  117  9.999999999999999e-26  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.873579  n/a   
 
 
-
 
NC_010002  Daci_5280  HAD family hydrolase  40.62 
 
 
228 aa  118  9.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  0.94241  normal 
 
 
-
 
NC_008463  PA14_25590  putative hydrolase  37.63 
 
 
230 aa  117  9.999999999999999e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.080664  normal 
 
 
-
 
NC_008825  Mpe_A0658  haloacid dehalogenase-like hydrolase  37.56 
 
 
222 aa  116  1.9999999999999998e-25  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.40238 
 
 
-
 
NC_012560  Avin_14840  HAD-superfamily hydrolase  34.54 
 
 
220 aa  117  1.9999999999999998e-25  Azotobacter vinelandii DJ  Bacteria  normal  0.770171  n/a   
 
 
-
 
NC_013889  TK90_1192  HAD-superfamily hydrolase, subfamily IA, variant 1  34.96 
 
 
232 aa  116  3e-25  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.998223  normal  0.137923 
 
 
-
 
NC_010622  Bphy_0820  HAD family hydrolase  40.09 
 
 
219 aa  114  1.0000000000000001e-24  Burkholderia phymatum STM815  Bacteria  normal  0.362734  normal 
 
 
-
 
NC_010506  Swoo_2034  HAD family hydrolase  32.04 
 
 
216 aa  114  1.0000000000000001e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  0.645104  normal  0.0672621 
 
 
-
 
NC_009654  Mmwyl1_2240  HAD family hydrolase  33.03 
 
 
214 aa  114  1.0000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.279618  normal  0.937061 
 
 
-
 
NC_007951  Bxe_A1064  putative haloacid dehalogenase-like hydrolase  39.52 
 
 
219 aa  114  1.0000000000000001e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.259823  normal 
 
 
-
 
NC_007954  Sden_2300  HAD family hydrolase  35.1 
 
 
215 aa  114  1.0000000000000001e-24  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000000835779  n/a   
 
 
-
 
NC_007963  Csal_1594  HAD family hydrolase  33.48 
 
 
234 aa  114  1.0000000000000001e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.109016  n/a   
 
 
-
 
NC_008752  Aave_1175  HAD family hydrolase  37.16 
 
 
222 aa  114  1.0000000000000001e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  0.341694  normal 
 
 
-
 
NC_009831  Ssed_2632  HAD family hydrolase  33.01 
 
 
216 aa  113  3e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  0.861911  hitchhiker  0.000131082 
 
 
-
 
NC_007973  Rmet_2438  HAD family hydrolase  37.85 
 
 
219 aa  112  4.0000000000000004e-24  Cupriavidus metallidurans CH34  Bacteria  normal  0.625372  normal 
 
 
-
 
NC_009092  Shew_1595  HAD family hydrolase  32.09 
 
 
219 aa  112  6e-24  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00389314  normal  0.0112895 
 
 
-
 
NC_010681  Bphyt_2920  HAD-superfamily hydrolase, subfamily IA, variant 1  38.68 
 
 
219 aa  112  7.000000000000001e-24  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00300829  normal 
 
 
-
 
NC_007912  Sde_1621  TatD-related deoxyribonuclease  34.21 
 
 
214 aa  111  1.0000000000000001e-23  Saccharophagus degradans 2-40  Bacteria  normal  0.0243824  normal 
 
 
-
 
NC_009997  Sbal195_1752  HAD family hydrolase  29.87 
 
 
238 aa  110  2.0000000000000002e-23  Shewanella baltica OS195  Bacteria  hitchhiker  0.00000718269  normal  0.2896 
 
 
-
 
NC_008345  Sfri_1492  HAD family hydrolase  32.08 
 
 
217 aa  110  2.0000000000000002e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.210059  n/a   
 
 
-
 
NC_009052  Sbal_1712  HAD family hydrolase  29.69 
 
 
239 aa  109  3e-23  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000000827821  n/a   
 
 
-
 
NC_007908  Rfer_1722  HAD family hydrolase  34.91 
 
 
228 aa  109  4.0000000000000004e-23  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3084  HAD family hydrolase  35.35 
 
 
219 aa  108  5e-23  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4786  HAD family hydrolase  36.02 
 
 
225 aa  108  8.000000000000001e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.480444 
 
 
-
 
NC_011898  Ccel_2097  HAD-superfamily hydrolase, subfamily IA, variant 3  29.09 
 
 
221 aa  108  9.000000000000001e-23  Clostridium cellulolyticum H10  Bacteria  normal  0.284323  n/a   
 
 
-
 
NC_007204  Psyc_0258  phosphoglycolate phosphatase  30.99 
 
 
235 aa  107  1e-22  Psychrobacter arcticus 273-4  Bacteria  normal  0.691366  normal 
 
 
-
 
NC_007969  Pcryo_0284  HAD family hydrolase  31.46 
 
 
234 aa  107  1e-22  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.251372 
 
 
-
 
NC_008740  Maqu_1874  HAD family hydrolase  34.88 
 
 
216 aa  107  1e-22  Marinobacter aquaeolei VT8  Bacteria  normal  0.785736  n/a   
 
 
-
 
NC_009665  Shew185_1709  HAD family hydrolase  29.44 
 
 
238 aa  107  2e-22  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000621435  n/a   
 
 
-
 
NC_011663  Sbal223_2655  HAD-superfamily hydrolase, subfamily IA, variant 3  28.88 
 
 
239 aa  106  4e-22  Shewanella baltica OS223  Bacteria  normal  0.019501  hitchhiker  0.000128755 
 
 
-
 
NC_009438  Sputcn32_1575  HAD family hydrolase  28.57 
 
 
238 aa  105  5e-22  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.000310395  n/a   
 
 
-
 
NC_007948  Bpro_3658  HAD family hydrolase  34.74 
 
 
219 aa  105  6e-22  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1042  putative phosphoglycolate phosphatase protein  38.28 
 
 
219 aa  105  7e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0803838  normal 
 
 
-
 
NC_012791  Vapar_1380  HAD-superfamily hydrolase, subfamily IA, variant 1  37.98 
 
 
223 aa  103  2e-21  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2502  HAD family hydrolase  31.61 
 
 
200 aa  103  2e-21  Shewanella pealeana ATCC 700345  Bacteria  normal  0.396303  n/a   
 
 
-
 
NC_008709  Ping_2206  HAD family hydrolase  31.6 
 
 
227 aa  102  3e-21  Psychromonas ingrahamii 37  Bacteria  normal  0.0834963  normal  0.088242 
 
 
-
 
NC_013422  Hneap_1758  HAD-superfamily hydrolase, subfamily IA, variant 1  33.64 
 
 
234 aa  101  8e-21  Halothiobacillus neapolitanus c2  Bacteria  normal  0.0639278  n/a   
 
 
-
 
NC_010682  Rpic_0907  HAD-superfamily hydrolase, subfamily IA, variant 1  37.85 
 
 
219 aa  101  9e-21  Ralstonia pickettii 12J  Bacteria  normal  0.0464753  normal  0.0304334 
 
 
-
 
NC_012856  Rpic12D_0972  HAD-superfamily hydrolase, subfamily IA, variant 1  37.85 
 
 
219 aa  101  1e-20  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0569787 
 
 
-
 
NC_008599  CFF8240_0391  phosphoglycolate phosphatase  32.12 
 
 
216 aa  100  2e-20  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4164  HAD family hydrolase  36.73 
 
 
193 aa  99.8  3e-20  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0540485  normal  0.889807 
 
 
-
 
NC_008390  Bamb_0989  HAD family hydrolase  41.24 
 
 
222 aa  99.8  4e-20  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2473  HAD family hydrolase  29.44 
 
 
248 aa  99.4  5e-20  Shewanella sp. MR-7  Bacteria  hitchhiker  0.000591891  hitchhiker  0.00615598 
 
 
-
 
NC_008060  Bcen_0633  HAD family hydrolase  39.69 
 
 
219 aa  99  6e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.32289  n/a   
 
 
-
 
NC_008542  Bcen2424_1113  HAD family hydrolase  39.69 
 
 
219 aa  99  6e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  0.970841  n/a   
 
 
-
 
NC_012912  Dd1591_0072  HAD-superfamily hydrolase, subfamily IA, variant 3  34.93 
 
 
230 aa  98.2  8e-20  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2565  HAD family hydrolase  29.96 
 
 
244 aa  98.6  8e-20  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00000244874  normal 
 
 
-
 
NC_010551  BamMC406_0993  HAD family hydrolase  39.69 
 
 
222 aa  98.2  9e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_0481  HAD family hydrolase  34.39 
 
 
231 aa  97.8  1e-19  Psychrobacter sp. PRwf-1  Bacteria  normal  0.158536  normal 
 
 
-
 
NC_008321  Shewmr4_2403  HAD family hydrolase  29 
 
 
248 aa  96.7  2e-19  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000854479  normal 
 
 
-
 
NC_013204  Elen_3084  HAD-superfamily hydrolase, subfamily IA, variant 1  32.86 
 
 
218 aa  96.7  3e-19  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_1071  HAD family hydrolase  37.57 
 
 
219 aa  96.3  4e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.357132  normal  0.149129 
 
 
-
 
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