127 homologs were found in PanDaTox collection
for query gene Mext_0089 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_0089  transcriptional regulator protein-like protein  100 
 
 
80 aa  157  4e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.483254  normal 
 
 
-
 
NC_010172  Mext_0170  ROSMUCR transcriptional regulator  89.19 
 
 
186 aa  129  1e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0082  transcriptional regulator, MucR family  87.84 
 
 
197 aa  127  5e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.288227  normal 
 
 
-
 
NC_010505  Mrad2831_1517  MucR family transcriptional regulator  52.31 
 
 
160 aa  64.7  4e-10  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.400145  normal  0.0460522 
 
 
-
 
NC_010511  M446_1153  MucR family transcriptional regulator  46.38 
 
 
174 aa  61.6  3e-09  Methylobacterium sp. 4-46  Bacteria  normal  0.877039  normal 
 
 
-
 
NC_010172  Mext_4474  ROSMUCR transcriptional regulator  53.42 
 
 
176 aa  60.1  1e-08  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4938  transcriptional regulator, MucR family  53.42 
 
 
176 aa  60.1  1e-08  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.686756  normal  0.493177 
 
 
-
 
NC_010725  Mpop_4988  transcriptional regulator, MucR family  52.05 
 
 
177 aa  60.1  1e-08  Methylobacterium populi BJ001  Bacteria  normal  0.103901  normal  0.173335 
 
 
-
 
NC_011894  Mnod_2474  transcriptional regulator, MucR family  46.77 
 
 
168 aa  58.9  2e-08  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011758  Mchl_5531  transcriptional regulator, MucR family  38.67 
 
 
170 aa  59.3  2e-08  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0316462 
 
 
-
 
NC_010505  Mrad2831_4669  MucR family transcriptional regulator  42.65 
 
 
169 aa  57  7e-08  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3912  MucR family transcriptional regulator  43.94 
 
 
137 aa  56.2  1e-07  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.913011  normal  0.1317 
 
 
-
 
NC_010511  M446_0276  MucR family transcriptional regulator  48.48 
 
 
151 aa  55.5  2e-07  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0114545 
 
 
-
 
NC_010725  Mpop_0503  transcriptional regulator, MucR family  42.42 
 
 
145 aa  55.5  2e-07  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0293653 
 
 
-
 
NC_010511  M446_1029  MucR family transcriptional regulator  49.15 
 
 
146 aa  55.8  2e-07  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0536  transcriptional regulator, MucR family  48.48 
 
 
176 aa  55.8  2e-07  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.452592  normal 
 
 
-
 
NC_011894  Mnod_5483  transcriptional regulator, MucR family  41.43 
 
 
147 aa  55.8  2e-07  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.596779  n/a   
 
 
-
 
NC_010511  M446_5185  MucR family transcriptional regulator  45 
 
 
185 aa  55.5  3e-07  Methylobacterium sp. 4-46  Bacteria  normal  0.238338  normal  0.0253848 
 
 
-
 
NC_010511  M446_6164  MucR family transcriptional regulator  45.31 
 
 
174 aa  55.1  3e-07  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4896  MucR family transcriptional regulator  46.97 
 
 
180 aa  54.7  4e-07  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.127609  hitchhiker  0.00352911 
 
 
-
 
NC_011894  Mnod_7194  transcriptional regulator, MucR family  39.71 
 
 
145 aa  54.7  4e-07  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1345  transcriptional regulator, MucR family  44.62 
 
 
166 aa  53.9  7e-07  Methylobacterium populi BJ001  Bacteria  normal  hitchhiker  0.000373643 
 
 
-
 
NC_010172  Mext_3787  ROSMUCR transcriptional regulator  43.75 
 
 
140 aa  53.9  7e-07  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2057  transcriptional regulator, MucR family  41.27 
 
 
138 aa  53.5  1e-06  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009507  Swit_5207  MucR family transcriptional regulator  40.28 
 
 
183 aa  53.1  1e-06  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.240071 
 
 
-
 
NC_011757  Mchl_1275  transcriptional regulator, MucR family  42.19 
 
 
146 aa  53.5  1e-06  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4097  MucR family transcriptional regulator  39.44 
 
 
143 aa  53.1  1e-06  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.812633 
 
 
-
 
NC_009485  BBta_3042  MucR family transcriptional regulator  39.68 
 
 
138 aa  53.1  1e-06  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2952  transcriptional regulator, MucR family  42.03 
 
 
160 aa  52.4  2e-06  Methylobacterium populi BJ001  Bacteria  normal  0.324392  normal 
 
 
-
 
NC_011757  Mchl_1610  transcriptional regulator, MucR family  41.89 
 
 
145 aa  52.4  2e-06  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1341  MucR family transcriptional regulator  42.19 
 
 
142 aa  51.6  3e-06  Caulobacter sp. K31  Bacteria  normal  0.272746  normal 
 
 
-
 
NC_007958  RPD_1940  MucR family transcriptional regulator  42.86 
 
 
138 aa  51.6  3e-06  Rhodopseudomonas palustris BisB5  Bacteria  decreased coverage  0.00262472  normal  0.275978 
 
 
-
 
NC_011894  Mnod_2091  transcriptional regulator, MucR family  38.75 
 
 
162 aa  51.2  4e-06  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0466  transcriptional regulator, MucR family  37.88 
 
 
145 aa  51.6  4e-06  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.138143 
 
 
-
 
NC_007406  Nwi_2227  ROSMUCR transcriptional regulator  44.26 
 
 
137 aa  51.2  4e-06  Nitrobacter winogradskyi Nb-255  Bacteria  decreased coverage  6.58566e-05  normal 
 
 
-
 
NC_010505  Mrad2831_4324  MucR family transcriptional regulator  40 
 
 
179 aa  51.2  4e-06  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0666853 
 
 
-
 
NC_010172  Mext_0432  ROSMUCR transcriptional regulator  37.88 
 
 
145 aa  51.6  4e-06  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3519  MucR family transcriptional regulator  44.44 
 
 
139 aa  51.2  4e-06  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.409098  normal  0.722255 
 
 
-
 
NC_010725  Mpop_5315  transcriptional regulator, MucR family  46.67 
 
 
171 aa  51.2  5e-06  Methylobacterium populi BJ001  Bacteria  normal  0.160957  normal  0.979168 
 
 
-
 
NC_011757  Mchl_5240  transcriptional regulator, MucR family  48.33 
 
 
175 aa  51.2  5e-06  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.672182 
 
 
-
 
NC_011894  Mnod_1282  transcriptional regulator, MucR family  41.43 
 
 
148 aa  51.2  5e-06  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.135766  n/a   
 
 
-
 
NC_007964  Nham_2627  MucR family transcriptional regulator  44.26 
 
 
137 aa  51.2  5e-06  Nitrobacter hamburgensis X14  Bacteria  normal  0.337964  n/a   
 
 
-
 
NC_010172  Mext_4773  ROSMUCR transcriptional regulator  48.33 
 
 
175 aa  50.8  6e-06  Methylobacterium extorquens PA1  Bacteria  normal  0.494992  normal 
 
 
-
 
NC_010511  M446_5564  MucR family transcriptional regulator  39.68 
 
 
156 aa  50.8  6e-06  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5176  MucR family transcriptional regulator  36.25 
 
 
190 aa  50.8  6e-06  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6743  MucR family transcriptional regulator  44.26 
 
 
156 aa  50.4  7e-06  Methylobacterium sp. 4-46  Bacteria  normal  0.328928  normal  0.300512 
 
 
-
 
NC_010172  Mext_2834  ROSMUCR transcriptional regulator  40.58 
 
 
162 aa  50.4  8e-06  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3060  transcriptional regulator, MucR family  40.58 
 
 
162 aa  50.4  8e-06  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3011  transcriptional regulator, MucR family  35.8 
 
 
173 aa  50.1  9e-06  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6343  transcriptional regulator, MucR family  43.33 
 
 
189 aa  50.4  9e-06  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4811  transcriptional regulator, MucR family  41.54 
 
 
166 aa  49.7  1e-05  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4927  transcriptional regulator, MucR family  38.57 
 
 
177 aa  50.1  1e-05  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.971725 
 
 
-
 
NC_010172  Mext_0032  ROSMUCR transcriptional regulator  40.98 
 
 
145 aa  49.7  1e-05  Methylobacterium extorquens PA1  Bacteria  normal  0.269512  normal 
 
 
-
 
NC_008783  BARBAKC583_0423  Ros/MucR family transcriptional regulator  37.31 
 
 
143 aa  49.3  2e-05  Bartonella bacilliformis KC583  Bacteria  normal  0.970108  n/a   
 
 
-
 
NC_011894  Mnod_1808  transcriptional regulator, MucR family  41.94 
 
 
160 aa  48.9  2e-05  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4973  transcriptional regulator, MucR family  34.33 
 
 
160 aa  48.9  2e-05  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_1357  MucR family transcriptional regulator  40.3 
 
 
141 aa  49.3  2e-05  Caulobacter sp. K31  Bacteria  normal  0.067604  normal 
 
 
-
 
NC_011757  Mchl_0270  transcriptional regulator, MucR family  46.15 
 
 
153 aa  49.3  2e-05  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2468  transcriptional regulator, MucR family  38.71 
 
 
165 aa  48.5  3e-05  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4463  ROSMUCR transcriptional regulator  39.13 
 
 
177 aa  48.5  3e-05  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1889  MucR family transcriptional regulator  39.68 
 
 
156 aa  48.9  3e-05  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009426  Saro_3967  MucR family transcriptional regulator  40.3 
 
 
159 aa  48.1  4e-05  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2842  MucR family transcriptional regulator  39.68 
 
 
139 aa  48.1  4e-05  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.840232 
 
 
-
 
NC_011666  Msil_1673  transcriptional regulator, MucR family  40 
 
 
137 aa  47.8  5e-05  Methylocella silvestris BL2  Bacteria  n/a    normal  0.233018 
 
 
-
 
NC_010725  Mpop_4977  transcriptional regulator, MucR family  37.68 
 
 
178 aa  47.8  5e-05  Methylobacterium populi BJ001  Bacteria  normal  0.443589  normal  0.0364251 
 
 
-
 
NC_011894  Mnod_7402  transcriptional regulator, MucR family  37.14 
 
 
133 aa  47.4  6e-05  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.169134  n/a   
 
 
-
 
NC_008347  Mmar10_1538  MucR family transcriptional regulator  35.53 
 
 
140 aa  47.8  6e-05  Maricaulis maris MCS10  Bacteria  normal  0.0321201  normal 
 
 
-
 
NC_011367  Gdia_3574  transcriptional regulator, MucR family  35.37 
 
 
185 aa  47.4  7e-05  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0283517  n/a   
 
 
-
 
NC_009507  Swit_5269  transcriptional regulator  41.79 
 
 
159 aa  47  8e-05  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.898275 
 
 
-
 
NC_009720  Xaut_1838  MucR family transcriptional regulator  38.1 
 
 
155 aa  47  9e-05  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0743894  normal  0.315346 
 
 
-
 
NC_007925  RPC_1774  MucR family transcriptional regulator  50 
 
 
138 aa  47  9e-05  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.257701  normal  0.0107118 
 
 
-
 
NC_010511  M446_6298  MucR family transcriptional regulator  47.73 
 
 
142 aa  47  9e-05  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0539112 
 
 
-
 
NC_010511  M446_6580  MucR family transcriptional regulator  35.71 
 
 
133 aa  46.6  0.0001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0358165 
 
 
-
 
NC_010514  Mrad2831_6380  MucR family transcriptional regulator  46.77 
 
 
172 aa  46.6  0.0001  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_2620  transcriptional regulator, MucR family  42.42 
 
 
140 aa  46.6  0.0001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.297322  n/a   
 
 
-
 
NC_011894  Mnod_0549  transcriptional regulator, MucR family  33.33 
 
 
147 aa  46.2  0.0001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.973698  n/a   
 
 
-
 
NC_010517  Mrad2831_6410  MucR family transcriptional regulator  46.77 
 
 
172 aa  46.6  0.0001  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_4157  transcriptional regulator, MucR family  41.94 
 
 
141 aa  46.6  0.0001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.157923  n/a   
 
 
-
 
NC_011893  Mnod_8789  transcriptional regulator, MucR family  37.04 
 
 
147 aa  46.6  0.0001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.292559  n/a   
 
 
-
 
NC_011892  Mnod_8753  transcriptional regulator, MucR family  46.77 
 
 
175 aa  46.2  0.0001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.286217  n/a   
 
 
-
 
NC_010511  M446_5488  MucR family transcriptional regulator  43.55 
 
 
158 aa  45.8  0.0002  Methylobacterium sp. 4-46  Bacteria  normal  0.622801  normal  0.0617685 
 
 
-
 
NC_011887  Mnod_7826  transcriptional regulator, MucR family  37.84 
 
 
174 aa  45.8  0.0002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1917  MucR family transcriptional regulator  37.14 
 
 
155 aa  45.8  0.0002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00617241 
 
 
-
 
NC_009511  Swit_2384  MucR family transcriptional regulator  39.68 
 
 
137 aa  45.4  0.0002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0068  transcriptional regulator, MucR family  45.16 
 
 
174 aa  46.2  0.0002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6579  transcriptional regulator, MucR family  38.1 
 
 
166 aa  45.8  0.0002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6739  MucR family transcriptional regulator  38.46 
 
 
164 aa  45.4  0.0003  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.055135 
 
 
-
 
NC_010172  Mext_2438  ROSMUCR transcriptional regulator  34.85 
 
 
143 aa  45.1  0.0003  Methylobacterium extorquens PA1  Bacteria  normal  0.634995  normal 
 
 
-
 
NC_008048  Sala_2067  MucR family transcriptional regulator  36.36 
 
 
144 aa  45.1  0.0003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.587924  normal  0.315987 
 
 
-
 
NC_010511  M446_0065  MucR family transcriptional regulator  36.51 
 
 
133 aa  45.1  0.0003  Methylobacterium sp. 4-46  Bacteria  normal  0.126654  normal  0.420331 
 
 
-
 
NC_011894  Mnod_4253  transcriptional regulator, MucR family  43.75 
 
 
147 aa  45.1  0.0003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4422  MucR family transcriptional regulator  40.32 
 
 
145 aa  45.1  0.0003  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.705801 
 
 
-
 
NC_011892  Mnod_8284  transcriptional regulator, MucR family  42.11 
 
 
143 aa  44.7  0.0004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.647815  n/a   
 
 
-
 
NC_010505  Mrad2831_3386  MucR family transcriptional regulator  44.44 
 
 
135 aa  44.3  0.0005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0319872 
 
 
-
 
NC_011894  Mnod_3505  transcriptional regulator, MucR family  40.32 
 
 
174 aa  44.3  0.0006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011887  Mnod_8109  transcriptional regulator, MucR family  38.1 
 
 
173 aa  44.3  0.0006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3902  transcriptional regulator, MucR family  41.94 
 
 
172 aa  44.3  0.0006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5627  transcriptional regulator, MucR family  41.94 
 
 
174 aa  44.3  0.0006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.698408  n/a   
 
 
-
 
NC_011894  Mnod_2999  transcriptional regulator, MucR family  35.53 
 
 
134 aa  44.3  0.0006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6541  transcriptional regulator, MucR family  34.33 
 
 
144 aa  44.3  0.0006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
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