37 homologs were found in PanDaTox collection
for query gene Mext_0028 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_0028  hypothetical protein  100 
 
 
218 aa  412  1e-114  Methylobacterium extorquens PA1  Bacteria  normal  0.920505  normal 
 
 
-
 
NC_011757  Mchl_0029  holo-ACP synthase, malonate decarboxylase-specific  92.24 
 
 
219 aa  339  2e-92  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0520843  normal 
 
 
-
 
NC_010725  Mpop_0050  hypothetical protein  78.54 
 
 
219 aa  327  8e-89  Methylobacterium populi BJ001  Bacteria  normal  0.390549  normal  0.0698555 
 
 
-
 
NC_010511  M446_6853  hypothetical protein  76.26 
 
 
218 aa  314  7e-85  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3155  holo-ACP synthase, malonate decarboxylase-specific  70.78 
 
 
218 aa  286  1e-76  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0171  hypothetical protein  58.22 
 
 
219 aa  219  2e-56  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.846138 
 
 
-
 
NC_010508  Bcenmc03_1245  phosphoribosyl-dephospho-CoA transferase  52.41 
 
 
222 aa  155  6e-37  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0753275 
 
 
-
 
NC_008060  Bcen_0792  phosphoribosyl-dephospho-CoA transferase  49.77 
 
 
222 aa  154  1e-36  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.147641  n/a   
 
 
-
 
NC_008542  Bcen2424_1273  phosphoribosyl-dephospho-CoA transferase  49.77 
 
 
222 aa  154  1e-36  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0280828  n/a   
 
 
-
 
NC_010084  Bmul_2046  phosphoribosyl-dephospho-CoA transferase  47.14 
 
 
222 aa  150  1e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4416  phosphoribosyl-dephospho-CoA transferase  48.83 
 
 
232 aa  144  1e-33  Burkholderia sp. 383  Bacteria  normal  0.356238  normal 
 
 
-
 
NC_011666  Msil_3188  holo-ACP synthase, malonate decarboxylase-specific  44.44 
 
 
245 aa  139  3e-32  Methylocella silvestris BL2  Bacteria  n/a    normal  0.605974 
 
 
-
 
NC_010551  BamMC406_1163  phosphoribosyl-dephospho-CoA transferase  46.73 
 
 
222 aa  137  9e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.707422  normal  0.167545 
 
 
-
 
NC_008390  Bamb_1151  phosphoribosyl-dephospho-CoA transferase  47.42 
 
 
222 aa  135  7e-31  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4290  hypothetical protein  41.83 
 
 
209 aa  101  7e-21  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1077  phosphoribosyl-dephospho-CoA transferase  37.85 
 
 
213 aa  101  9e-21  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0790  malonate decarboxylase  41.01 
 
 
229 aa  99  4e-20  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00220342  normal 
 
 
-
 
NC_008785  BMASAVP1_A1260  phosphoribosyl-dephospho-CoA transferase  43.97 
 
 
296 aa  97.1  2e-19  Burkholderia mallei SAVP1  Bacteria  normal  0.199636  n/a   
 
 
-
 
NC_008836  BMA10229_A0610  phosphoribosyl-dephospho-CoA transferase  43.97 
 
 
296 aa  97.1  2e-19  Burkholderia mallei NCTC 10229  Bacteria  normal  0.785994  n/a   
 
 
-
 
NC_007651  BTH_I2799  phosphoribosyl-dephospho-CoA transferase  44.29 
 
 
294 aa  97.1  2e-19  Burkholderia thailandensis E264  Bacteria  normal  0.0976082  n/a   
 
 
-
 
NC_009080  BMA10247_0543  phosphoribosyl-dephospho-CoA transferase  43.97 
 
 
308 aa  96.7  2e-19  Burkholderia mallei NCTC 10247  Bacteria  normal  0.39768  n/a   
 
 
-
 
NC_006348  BMA3033  phosphoribosyl-dephospho-CoA transferase  43.97 
 
 
308 aa  96.7  2e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  0.623128  n/a   
 
 
-
 
NC_009076  BURPS1106A_1486  phosphoribosyl-dephospho-CoA transferase  43.97 
 
 
308 aa  95.5  6e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  0.876381  n/a   
 
 
-
 
NC_009074  BURPS668_1456  phosphoribosyl-dephospho-CoA transferase  43.97 
 
 
308 aa  95.1  6e-19  Burkholderia pseudomallei 668  Bacteria  normal  0.0184396  n/a   
 
 
-
 
NC_007434  BURPS1710b_1587  phosphoribosyl-dephospho-CoA transferase  43.97 
 
 
307 aa  95.1  7e-19  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1764  holo-ACP synthase, malonate decarboxylase-specific  36.41 
 
 
237 aa  86.3  3e-16  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5370  holo-ACP synthase, malonate decarboxylase-specific  32.41 
 
 
229 aa  81.3  1e-14  Variovorax paradoxus S110  Bacteria  normal  0.0548916  n/a   
 
 
-
 
NC_007908  Rfer_1847  malonate decarboxylase  31.88 
 
 
231 aa  68.9  5e-11  Rhodoferax ferrireducens T118  Bacteria  normal  0.705884  n/a   
 
 
-
 
NC_010524  Lcho_0075  holo-ACP synthase, malonate decarboxylase-specific  31.36 
 
 
253 aa  68.2  8e-11  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_4016  malonate decarboxylase  32.3 
 
 
222 aa  66.6  2e-10  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1062  hypothetical protein  31.41 
 
 
244 aa  57.8  1e-07  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2892  phosphoribosyl-dephospho-CoA transferase  32.64 
 
 
252 aa  56.6  3e-07  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0787604  normal  0.0710753 
 
 
-
 
NC_007204  Psyc_1142  putative malonate decarboxylase, subunit E  25.81 
 
 
234 aa  54.7  1e-06  Psychrobacter arcticus 273-4  Bacteria  normal  0.0172841  normal  0.360178 
 
 
-
 
NC_007778  RPB_3293  hypothetical protein  33.33 
 
 
237 aa  49.7  3e-05  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp2496  hypothetical protein  22.07 
 
 
207 aa  47  0.0002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010678  Rpic_4946  phosphoribosyl-dephospho-CoA transferase  31.55 
 
 
211 aa  41.6  0.008  Ralstonia pickettii 12J  Bacteria  normal  normal  0.11637 
 
 
-
 
NC_012857  Rpic12D_3870  phosphoribosyl-dephospho-CoA transferase  31.55 
 
 
211 aa  41.6  0.008  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
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