117 homologs were found in PanDaTox collection
for query gene M446_1581 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_1581  TRAP transporter solute receptor TAXI family protein  100 
 
 
457 aa  897    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.193293 
 
 
-
 
NC_011666  Msil_2760  TRAP transporter solute receptor, TAXI family  46.9 
 
 
433 aa  384  1e-105  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010511  M446_2265  TRAP transporter solute receptor TAXI family protein  35.27 
 
 
442 aa  206  7e-52  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.00194673 
 
 
-
 
NC_011894  Mnod_0342  TRAP transporter solute receptor, TAXI family  36.32 
 
 
423 aa  205  1e-51  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0450847  n/a   
 
 
-
 
NC_011004  Rpal_0409  TRAP transporter solute receptor, TAXI family  33.33 
 
 
462 aa  205  1e-51  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.309942  n/a   
 
 
-
 
NC_009485  BBta_0249  hypothetical protein  33.18 
 
 
448 aa  203  5e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2525  TRAP transporter solute receptor TAXI family protein  31.13 
 
 
486 aa  184  2.0000000000000003e-45  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.839724  normal  0.154925 
 
 
-
 
NC_007778  RPB_0100  TRAP transporter solute receptor TAXI family protein  35.33 
 
 
480 aa  179  5.999999999999999e-44  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0702  TRAP transporter solute receptor TAXI family protein  34.38 
 
 
480 aa  179  8e-44  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.871087  normal 
 
 
-
 
NC_011666  Msil_3025  TRAP transporter solute receptor, TAXI family  31.25 
 
 
441 aa  171  2e-41  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010172  Mext_2302  TRAP-type uncharacterized transport system periplasmic component-like protein  30.82 
 
 
474 aa  168  2e-40  Methylobacterium extorquens PA1  Bacteria  normal  0.172272  hitchhiker  0.00762339 
 
 
-
 
NC_010725  Mpop_2259  TRAP-type uncharacterized transport system periplasmic component-like protein  29.91 
 
 
469 aa  168  2e-40  Methylobacterium populi BJ001  Bacteria  normal  0.466386  normal  0.36502 
 
 
-
 
NC_011757  Mchl_2577  TRAP-type uncharacterized transport system periplasmic component-like protein  30.82 
 
 
469 aa  168  2e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.301233 
 
 
-
 
NC_007958  RPD_1959  hypothetical protein  30.14 
 
 
467 aa  159  9e-38  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3495  hypothetical protein  29.29 
 
 
465 aa  154  2e-36  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3430  TRAP transporter solute receptor TAXI family protein  32.95 
 
 
461 aa  149  9e-35  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.199051 
 
 
-
 
NC_007964  Nham_0909  hypothetical protein  29.37 
 
 
491 aa  148  2.0000000000000003e-34  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2087  hypothetical protein  29.24 
 
 
466 aa  142  9e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.073016  n/a   
 
 
-
 
NC_010581  Bind_0899  hypothetical protein  28.31 
 
 
437 aa  140  3.9999999999999997e-32  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.727607  normal  0.541745 
 
 
-
 
NC_009485  BBta_6537  hypothetical protein  28.61 
 
 
467 aa  140  7e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.866176  normal 
 
 
-
 
NC_010505  Mrad2831_3542  TRAP-type uncharacterized transport system periplasmic component-like protein  27.75 
 
 
472 aa  139  7.999999999999999e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.919124 
 
 
-
 
NC_011894  Mnod_0519  TRAP-type uncharacterized transport system periplasmic component-like protein  31.75 
 
 
463 aa  137  3.0000000000000003e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0184  TRAP-type uncharacterized transport system periplasmic component-like protein  28.92 
 
 
453 aa  137  3.0000000000000003e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.864216  normal  0.611675 
 
 
-
 
NC_010511  M446_2036  TRAP-type uncharacterized transport system periplasmic component-like protein  31.34 
 
 
463 aa  137  6.0000000000000005e-31  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00372211 
 
 
-
 
NC_010172  Mext_0239  TRAP-type uncharacterized transport system periplasmic component-like protein  28.67 
 
 
453 aa  135  9.999999999999999e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.264256  normal 
 
 
-
 
NC_010505  Mrad2831_5654  TRAP-type uncharacterized transport system periplasmic component-like protein  27.3 
 
 
471 aa  134  3e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2797  TRAP-type uncharacterized transport system periplasmic component-like protein  30.55 
 
 
485 aa  131  3e-29  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_4597  TRAP transporter solute receptor, TAXI family  25.69 
 
 
454 aa  128  2.0000000000000002e-28  Cyanothece sp. PCC 7425  Bacteria  normal  0.244351  normal 
 
 
-
 
NC_010581  Bind_2753  hypothetical protein  28 
 
 
433 aa  120  6e-26  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4219  TRAP-type uncharacterized transport system periplasmic component-like protein  28.57 
 
 
465 aa  117  3.9999999999999997e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.340628 
 
 
-
 
NC_010511  M446_1545  TRAP-type uncharacterized transport system periplasmic component-like protein  25.85 
 
 
468 aa  116  7.999999999999999e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0107  TRAP-type uncharacterized transport system periplasmic component-like protein  26.55 
 
 
453 aa  116  8.999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4573  TRAP transporter solute receptor, TAXI family  24.12 
 
 
446 aa  116  8.999999999999998e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_2929  hypothetical protein  28.07 
 
 
443 aa  112  1.0000000000000001e-23  Dechloromonas aromatica RCB  Bacteria  normal  0.0484025  normal 
 
 
-
 
NC_011894  Mnod_5694  TRAP-type uncharacterized transport system periplasmic component-like protein  27.69 
 
 
477 aa  110  5e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4743  TRAP-type uncharacterized transport system periplasmic component-like protein  27.38 
 
 
457 aa  102  1e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.704005  normal 
 
 
-
 
NC_010510  Mrad2831_5881  TRAP-type uncharacterized transport system periplasmic component-like protein  25.69 
 
 
440 aa  95.1  2e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.810377 
 
 
-
 
NC_011884  Cyan7425_4331  TRAP transporter solute receptor, TAXI family  25.9 
 
 
453 aa  91.7  2e-17  Cyanothece sp. PCC 7425  Bacteria  normal  0.794472  normal 
 
 
-
 
NC_008345  Sfri_3566  TRAP transporter solute receptor, TAXI family protein  24.24 
 
 
317 aa  76.3  0.000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.28304  n/a   
 
 
-
 
NC_008740  Maqu_2063  TRAP transporter solute receptor TAXI family protein  25.66 
 
 
327 aa  75.1  0.000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  0.800081  n/a   
 
 
-
 
NC_009439  Pmen_4560  TRAP transporter solute receptor TAXI family protein  27.15 
 
 
317 aa  75.5  0.000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3381  TRAP transporter solute receptor TAXI family protein  26.07 
 
 
318 aa  73.9  0.000000000006  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3511  TRAP-type uncharacterized transport system periplasmic component-like protein  27.14 
 
 
179 aa  71.6  0.00000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2848  immunogenic protein  25.66 
 
 
328 aa  69.7  0.0000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_6347  hypothetical protein  26.84 
 
 
319 aa  69.3  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.884307  n/a   
 
 
-
 
NC_007204  Psyc_0746  TRAP-T family transporter periplasmic substrate binding subunit  22.94 
 
 
344 aa  68.9  0.0000000002  Psychrobacter arcticus 273-4  Bacteria  normal  0.842378  normal 
 
 
-
 
NC_009052  Sbal_0433  TRAP transporter solute receptor TAXI family protein  26.16 
 
 
318 aa  68.2  0.0000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3901  TRAP transporter solute receptor TAXI family protein  26.16 
 
 
318 aa  68.2  0.0000000003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4024  TRAP transporter solute receptor TAXI family protein  26.16 
 
 
318 aa  68.2  0.0000000003  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3828  TRAP transporter solute receptor, TAXI family  26.16 
 
 
318 aa  68.2  0.0000000003  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_73120  hypothetical protein  25.75 
 
 
319 aa  67.8  0.0000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3688  hypothetical protein  24.28 
 
 
324 aa  65.5  0.000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.269569 
 
 
-
 
NC_009783  VIBHAR_00793  hypothetical protein  22.64 
 
 
322 aa  65.1  0.000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_0431  TRAP transporter solute receptor, TAXI family  25.28 
 
 
316 aa  65.1  0.000000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0741  TRAP transporter solute receptor TAXI family protein  22.48 
 
 
348 aa  64.3  0.000000004  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003379  immunogenic protein  23.31 
 
 
323 aa  64.3  0.000000004  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_02419  hypothetical protein  22.56 
 
 
323 aa  63.5  0.000000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_0456  immunogenic-related protein  25.09 
 
 
318 aa  63.2  0.00000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007494  RSP_1413  TRAP-T family transporter periplasmic binding component  24.28 
 
 
324 aa  62.8  0.00000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3483  TRAP transporter solute receptor TAXI family protein  24.28 
 
 
324 aa  62.8  0.00000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1445  TRAP transporter solute receptor, TAXI family  28.62 
 
 
307 aa  62.4  0.00000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0461  TRAP transporter solute receptor TAXI family protein  25.45 
 
 
318 aa  61.6  0.00000003  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0177  TRAP transporter solute receptor TAXI family protein  23.44 
 
 
326 aa  61.2  0.00000004  Chelativorans sp. BNC1  Bacteria  normal  0.811435  n/a   
 
 
-
 
NC_008322  Shewmr7_3568  TRAP transporter solute receptor TAXI family protein  25.45 
 
 
318 aa  61.2  0.00000004  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0457  response regulator receiver protein  25.45 
 
 
318 aa  61.2  0.00000004  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0846  TRAP transporter solute receptor TAXI family protein  24.49 
 
 
306 aa  60.8  0.00000005  Shewanella woodyi ATCC 51908  Bacteria  normal  0.391191  normal 
 
 
-
 
NC_013456  VEA_001678  TRAP transporter solute receptor TAXI family precursor  21.89 
 
 
322 aa  60.5  0.00000006  Vibrio sp. Ex25  Bacteria  normal  0.150837  n/a   
 
 
-
 
NC_008554  Sfum_3723  TRAP transporter solute receptor TAXI family protein  24.56 
 
 
316 aa  60.5  0.00000006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2949  TRAP transporter solute receptor TAXI family protein  26.42 
 
 
318 aa  60.5  0.00000006  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0733999 
 
 
-
 
NC_008254  Meso_4067  TRAP transporter solute receptor TAXI family protein  24.35 
 
 
318 aa  59.3  0.0000001  Chelativorans sp. BNC1  Bacteria  normal  0.548232  n/a   
 
 
-
 
NC_011312  VSAL_I0356  hypothetical protein  21.89 
 
 
324 aa  58.9  0.0000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.097907  n/a   
 
 
-
 
NC_014212  Mesil_2159  TRAP transporter solute receptor, TAXI family  22.18 
 
 
317 aa  58.2  0.0000003  Meiothermus silvanus DSM 9946  Bacteria  normal  0.239874  normal  0.13141 
 
 
-
 
NC_007643  Rru_A0608  TRAP transporter solute receptor TAXI family protein  27.27 
 
 
326 aa  58.2  0.0000003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.516133  n/a   
 
 
-
 
NC_007802  Jann_2331  TRAP transporter solute receptor TAXI family protein  22.93 
 
 
322 aa  56.6  0.0000008  Jannaschia sp. CCS1  Bacteria  normal  0.0699297  normal 
 
 
-
 
NC_011312  VSAL_I1229  putative immunogenic protein precursor  22.86 
 
 
310 aa  56.2  0.000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.144519  n/a   
 
 
-
 
NC_002947  PP_3954  periplasmic binding protein, putative  22.65 
 
 
316 aa  55.5  0.000002  Pseudomonas putida KT2440  Bacteria  normal  normal  0.391333 
 
 
-
 
NC_010424  Daud_1256  TRAP transporter solute receptor TAXI family protein  21.6 
 
 
344 aa  55.1  0.000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1613  TRAP dicarboxylate family transporter DctP subunit  23.22 
 
 
317 aa  52.8  0.00001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1175  TRAP transporter solute receptor TAXI family protein  26.16 
 
 
330 aa  52.8  0.00001  Ruegeria sp. TM1040  Bacteria  normal  0.155667  normal  0.336664 
 
 
-
 
NC_013889  TK90_1890  TRAP transporter solute receptor, TAXI family  22.92 
 
 
333 aa  52  0.00002  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.966009  normal 
 
 
-
 
NC_013946  Mrub_1635  TAXI family TRAP transporter solute receptor  23.4 
 
 
315 aa  52  0.00002  Meiothermus ruber DSM 1279  Bacteria  normal  0.0832335  normal 
 
 
-
 
NC_013173  Dbac_0033  TRAP transporter solute receptor, TAXI family  22.99 
 
 
319 aa  52  0.00002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3839  TRAP transporter solute receptor TAXI family protein  22.07 
 
 
327 aa  52  0.00002  Sinorhizobium medicae WSM419  Bacteria  normal  0.0135422  normal 
 
 
-
 
NC_011901  Tgr7_1556  TRAP transporter solute receptor TAXI family protein  23.74 
 
 
328 aa  52.4  0.00002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4986  TRAP transporter solute receptor TAXI family protein  21.68 
 
 
512 aa  51.6  0.00003  Trichodesmium erythraeum IMS101  Bacteria  normal  0.354924  normal 
 
 
-
 
NC_007908  Rfer_1635  TRAP transporter solute receptor TAXI family protein  23.6 
 
 
319 aa  50.8  0.00006  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0267  TRAP transporter solute receptor TAXI family protein  22.85 
 
 
317 aa  50.4  0.00006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.418804  normal 
 
 
-
 
NC_009380  Strop_1697  TRAP transporter solute receptor TAXI family protein  23.9 
 
 
330 aa  50.8  0.00006  Salinispora tropica CNB-440  Bacteria  normal  0.607751  normal  0.828936 
 
 
-
 
NC_009428  Rsph17025_0290  TRAP transporter solute receptor TAXI family protein  23.97 
 
 
317 aa  50.4  0.00007  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0541635  normal 
 
 
-
 
NC_009485  BBta_0937  putative TRAP-type uncharacterized transport system, periplasmic component  23.08 
 
 
320 aa  50.1  0.00008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_0881  TRAP transporter solute receptor, TAXI family  23.7 
 
 
346 aa  50.1  0.00008  Halomicrobium mukohataei DSM 12286  Archaea  decreased coverage  0.000456072  normal  0.0650778 
 
 
-
 
NC_009952  Dshi_1443  TRAP transporter solute receptor  23.5 
 
 
322 aa  50.1  0.00008  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.552427 
 
 
-
 
NC_009953  Sare_1695  TRAP transporter solute receptor TAXI family protein  24.12 
 
 
315 aa  50.1  0.00009  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000228802 
 
 
-
 
NC_007925  RPC_4400  TRAP transporter solute receptor TAXI family protein  24.32 
 
 
315 aa  49.3  0.0001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.478919  normal  0.223671 
 
 
-
 
NC_007963  Csal_2671  TRAP transporter solute receptor TAXI family protein  22.56 
 
 
325 aa  49.3  0.0001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0380  periplasmic-binding protein  24.05 
 
 
342 aa  48.9  0.0002  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.0000526249  n/a   
 
 
-
 
NC_009668  Oant_4101  TRAP transporter solute receptor TAXI family protein  23.36 
 
 
317 aa  49.3  0.0002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.32075  n/a   
 
 
-
 
NC_008554  Sfum_2942  TRAP transporter solute receptor TAXI family protein  25.99 
 
 
345 aa  48.5  0.0003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_4160  TRAP transporter solute receptor TAXI family protein  22.83 
 
 
312 aa  47.8  0.0004  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2004  TRAP transporter solute receptor TAXI family protein  22.64 
 
 
338 aa  47  0.0006  Polaromonas sp. JS666  Bacteria  normal  0.373091  normal 
 
 
-
 
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