More than 300 homologs were found in PanDaTox collection
for query gene Lferr_0742 on replicon NC_011206
Organism: Acidithiobacillus ferrooxidans ATCC 53993



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011206  Lferr_0742  cold-shock DNA-binding domain protein  100 
 
 
67 aa  136  7e-32  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  unclonable  0.0000000000219995  unclonable  0.0000000000274746 
 
 
-
 
NC_011761  AFE_0590  cold-shock protein  100 
 
 
67 aa  136  7e-32  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  hitchhiker  0.000832642  n/a   
 
 
-
 
NC_011662  Tmz1t_1374  cold-shock DNA-binding domain protein  74.63 
 
 
67 aa  107  7.000000000000001e-23  Thauera sp. MZ1T  Bacteria  normal  0.287556  n/a   
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  71.21 
 
 
67 aa  104  4e-22  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_011662  Tmz1t_1251  cold-shock DNA-binding domain protein  70.15 
 
 
67 aa  104  4e-22  Thauera sp. MZ1T  Bacteria  normal  0.791861  n/a   
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  71.21 
 
 
67 aa  104  4e-22  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  71.21 
 
 
67 aa  104  4e-22  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2246  cold-shock DNA-binding domain-containing protein  70.15 
 
 
67 aa  103  7e-22  Nitrosospira multiformis ATCC 25196  Bacteria  decreased coverage  0.000000157436  n/a   
 
 
-
 
NC_009675  Anae109_0273  cold-shock DNA-binding domain-containing protein  69.7 
 
 
67 aa  103  8e-22  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.355642 
 
 
-
 
NC_011891  A2cp1_1049  cold-shock DNA-binding domain protein  70.77 
 
 
67 aa  102  2e-21  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  69.23 
 
 
67 aa  102  2e-21  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_007298  Daro_3093  cold-shock DNA-binding protein family protein  67.16 
 
 
72 aa  102  2e-21  Dechloromonas aromatica RCB  Bacteria  normal  0.475725  normal 
 
 
-
 
NC_007760  Adeh_0988  cold-shock DNA-binding protein family protein  70.77 
 
 
67 aa  102  2e-21  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0492  putative cold-shock DNA-binding domain protein  73.85 
 
 
67 aa  102  2e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1045  cold-shock DNA-binding domain protein  70.77 
 
 
67 aa  102  2e-21  Anaeromyxobacter sp. K  Bacteria  normal  0.396466  n/a   
 
 
-
 
NC_008148  Rxyl_0175  cold-shock DNA-binding protein family protein  69.7 
 
 
67 aa  101  3e-21  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0752  cold-shock DNA-binding domain-containing protein  71.21 
 
 
67 aa  101  4e-21  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00000576972  n/a   
 
 
-
 
NC_009675  Anae109_4042  cold-shock DNA-binding domain-containing protein  69.23 
 
 
67 aa  100  6e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_4117  cold-shock DNA-binding domain-containing protein  70.77 
 
 
67 aa  100  8e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.327381  normal  0.21845 
 
 
-
 
NC_011145  AnaeK_3292  cold-shock DNA-binding domain protein  69.23 
 
 
67 aa  100  9e-21  Anaeromyxobacter sp. K  Bacteria  hitchhiker  0.0070619  n/a   
 
 
-
 
NC_009675  Anae109_2532  cold-shock DNA-binding domain-containing protein  74.24 
 
 
65 aa  100  9e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.19716  normal  0.287944 
 
 
-
 
NC_011891  A2cp1_3366  cold-shock DNA-binding domain protein  69.23 
 
 
67 aa  100  9e-21  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp1053  cold shock-like transcription regulator protein  67.16 
 
 
67 aa  99.4  1e-20  Ralstonia solanacearum GMI1000  Bacteria  normal  0.470883  normal 
 
 
-
 
NC_011145  AnaeK_2630  cold-shock DNA-binding domain protein  72.73 
 
 
66 aa  99.8  1e-20  Anaeromyxobacter sp. K  Bacteria  normal  0.681724  n/a   
 
 
-
 
NC_011891  A2cp1_2724  cold-shock DNA-binding domain protein  72.73 
 
 
66 aa  99.8  1e-20  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.720009  n/a   
 
 
-
 
NC_011901  Tgr7_0507  cold-shock DNA-binding domain protein  68.66 
 
 
67 aa  99.8  1e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.804223  n/a   
 
 
-
 
NC_007760  Adeh_1235  cold-shock DNA-binding protein family protein  72.73 
 
 
66 aa  99.8  1e-20  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5342  cold-shock DNA-binding protein family protein  65.67 
 
 
67 aa  99  2e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0103  cold-shock DNA-binding domain protein  64.62 
 
 
67 aa  99  2e-20  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5818  cold-shock DNA-binding protein family  65.67 
 
 
67 aa  99  2e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0207  cold-shock domain-contain protein  74.24 
 
 
66 aa  98.2  3e-20  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.0000092661  n/a   
 
 
-
 
NC_011901  Tgr7_0172  cold-shock DNA-binding domain protein  71.88 
 
 
67 aa  98.2  3e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  hitchhiker  0.0000163048  n/a   
 
 
-
 
NC_013174  Jden_0301  cold-shock DNA-binding domain protein  65.67 
 
 
67 aa  98.2  3e-20  Jonesia denitrificans DSM 20603  Bacteria  decreased coverage  0.00253542  normal  0.0688177 
 
 
-
 
NC_010622  Bphy_0567  cold-shock DNA-binding domain-containing protein  65.67 
 
 
68 aa  98.2  3e-20  Burkholderia phymatum STM815  Bacteria  unclonable  0.0000000000101913  hitchhiker  0.000143899 
 
 
-
 
NC_007404  Tbd_0855  cold-shock DNA-binding protein family protein  67.69 
 
 
68 aa  98.2  3e-20  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.563444  normal  0.445485 
 
 
-
 
NC_010678  Rpic_4276  cold-shock DNA-binding domain protein  68.75 
 
 
67 aa  98.2  3e-20  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1291  cold-shock DNA-binding domain-containing protein  65.67 
 
 
67 aa  98.2  3e-20  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.515471  n/a   
 
 
-
 
NC_007947  Mfla_2140  cold-shock DNA-binding protein family protein  65.67 
 
 
67 aa  98.2  3e-20  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.000000000648799  normal 
 
 
-
 
NC_012857  Rpic12D_4386  cold-shock DNA-binding domain protein  68.75 
 
 
67 aa  98.2  3e-20  Ralstonia pickettii 12D  Bacteria  normal  normal  0.490734 
 
 
-
 
NC_007298  Daro_3392  cold-shock DNA-binding protein family protein  67.16 
 
 
68 aa  97.8  4e-20  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_4020  cold-shock DNA-binding domain-containing protein  74.24 
 
 
66 aa  97.4  6e-20  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000184454  n/a   
 
 
-
 
NC_011891  A2cp1_2681  cold-shock DNA-binding domain protein  68.66 
 
 
67 aa  97.4  6e-20  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0114675  n/a   
 
 
-
 
NC_007760  Adeh_1274  cold-shock DNA-binding protein family protein  68.66 
 
 
67 aa  97.4  6e-20  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2588  cold-shock DNA-binding domain protein  68.66 
 
 
67 aa  97.4  6e-20  Anaeromyxobacter sp. K  Bacteria  normal  0.110334  n/a   
 
 
-
 
NC_013235  Namu_2053  cold-shock DNA-binding domain protein  67.16 
 
 
67 aa  97.1  7e-20  Nakamurella multipartita DSM 44233  Bacteria  normal  0.203977  normal  0.0111256 
 
 
-
 
NC_007760  Adeh_3176  cold-shock DNA-binding protein family protein  66.15 
 
 
67 aa  97.1  8e-20  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0191  cold-shock domain-contain protein  70.15 
 
 
66 aa  96.3  1e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2869  cold-shock DNA-binding protein family protein  70.77 
 
 
67 aa  95.9  1e-19  Nocardioides sp. JS614  Bacteria  normal  0.0181409  n/a   
 
 
-
 
NC_007336  Reut_C6014  cold-shock DNA-binding protein family protein  63.08 
 
 
67 aa  96.3  1e-19  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5134  cold-shock DNA-binding protein family protein  62.12 
 
 
67 aa  96.3  1e-19  Ralstonia eutropha JMP134  Bacteria  normal  0.984065  n/a   
 
 
-
 
NC_007511  Bcep18194_B1449  cold-shock DNA-binding protein family protein  67.19 
 
 
67 aa  96.7  1e-19  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5838  cold-shock DNA-binding domain-containing protein  67.19 
 
 
67 aa  96.7  1e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.284132  normal 
 
 
-
 
NC_014151  Cfla_0013  cold-shock DNA-binding domain protein  66.15 
 
 
67 aa  96.7  1e-19  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2345  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  96.3  1e-19  Ralstonia pickettii 12D  Bacteria  normal  0.574294  normal  0.405321 
 
 
-
 
NC_009675  Anae109_2494  cold-shock DNA-binding domain-containing protein  67.69 
 
 
67 aa  96.7  1e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.170049  decreased coverage  0.000196654 
 
 
-
 
NC_010682  Rpic_2735  cold-shock DNA-binding domain protein  64.18 
 
 
67 aa  96.3  1e-19  Ralstonia pickettii 12J  Bacteria  normal  0.723886  normal  0.792546 
 
 
-
 
NC_013521  Sked_02480  cold-shock DNA-binding protein family  63.08 
 
 
67 aa  96.7  1e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.181166  normal 
 
 
-
 
NC_008061  Bcen_3904  cold-shock DNA-binding domain-containing protein  67.19 
 
 
67 aa  96.7  1e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0290  cold-shock DNA-binding protein family protein  67.19 
 
 
67 aa  96.3  1e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2676  cold-shock DNA-binding protein family protein  67.69 
 
 
67 aa  96.3  1e-19  Alkalilimnicola ehrlichii MLHE-1  Bacteria  hitchhiker  0.00000256327  unclonable  1.4308e-18 
 
 
-
 
NC_008543  Bcen2424_4464  cold-shock DNA-binding domain-containing protein  67.19 
 
 
67 aa  96.7  1e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1083  cold-shock DNA-binding domain protein  73.77 
 
 
69 aa  95.9  1e-19  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3009  cold-shock DNA-binding domain protein  72.73 
 
 
66 aa  96.3  1e-19  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.000000338094  n/a   
 
 
-
 
NC_007336  Reut_C6028  cold-shock DNA-binding protein family protein  63.08 
 
 
67 aa  95.9  2e-19  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4361  cold-shock DNA-binding domain-containing protein  65.62 
 
 
67 aa  95.9  2e-19  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3167  cold-shock DNA-binding domain protein  66.15 
 
 
68 aa  95.9  2e-19  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000000493488  hitchhiker  0.00220171 
 
 
-
 
NC_010676  Bphyt_6907  cold-shock DNA-binding domain protein  62.69 
 
 
67 aa  95.9  2e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.240211  normal  0.394944 
 
 
-
 
NC_007951  Bxe_A0798  cold-shock DNA-binding protein family protein  66.15 
 
 
68 aa  95.9  2e-19  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.0000000000000106482  normal 
 
 
-
 
NC_007952  Bxe_B2951  cold-shock DNA-binding protein family protein  62.69 
 
 
77 aa  95.9  2e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.15288  normal 
 
 
-
 
NC_008391  Bamb_3900  cold-shock DNA-binding domain-containing protein  65.62 
 
 
67 aa  95.9  2e-19  Burkholderia ambifaria AMMD  Bacteria  normal  0.878106  normal 
 
 
-
 
NC_007434  BURPS1710b_1112  cold shock transcription regulator protein  64.18 
 
 
81 aa  95.1  3e-19  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.00000000170415  n/a   
 
 
-
 
NC_009483  Gura_4380  cold-shock DNA-binding domain-containing protein  72.73 
 
 
66 aa  94.7  3e-19  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000149248  n/a   
 
 
-
 
NC_007651  BTH_I0761  cold-shock domain-contain protein  64.18 
 
 
81 aa  95.1  3e-19  Burkholderia thailandensis E264  Bacteria  unclonable  0.00000000000025188  n/a   
 
 
-
 
NC_007963  Csal_1668  cold-shock DNA-binding protein family protein  61.19 
 
 
67 aa  94.7  3e-19  Chromohalobacter salexigens DSM 3043  Bacteria  decreased coverage  0.0000281076  n/a   
 
 
-
 
NC_009074  BURPS668_0958  cold shock protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia pseudomallei 668  Bacteria  unclonable  0.000000000000117939  n/a   
 
 
-
 
NC_009076  BURPS1106A_0962  cold shock protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia pseudomallei 1106a  Bacteria  decreased coverage  0.000153995  n/a   
 
 
-
 
NC_011071  Smal_2965  cold-shock DNA-binding domain protein  62.69 
 
 
68 aa  94.7  4e-19  Stenotrophomonas maltophilia R551-3  Bacteria  normal  hitchhiker  0.0000138264 
 
 
-
 
NC_006348  BMA2279  cold-shock domain-contain protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia mallei ATCC 23344  Bacteria  decreased coverage  0.000000000750079  n/a   
 
 
-
 
NC_012857  Rpic12D_3895  cold-shock DNA-binding domain protein  64.62 
 
 
67 aa  94.4  4e-19  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A0574  cold-shock domain-contain protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.000000000000358394  n/a   
 
 
-
 
NC_007517  Gmet_0340  cold-shock DNA-binding protein family protein  71.21 
 
 
66 aa  94.7  4e-19  Geobacter metallireducens GS-15  Bacteria  unclonable  3.6796e-20  unclonable  6.2466300000000005e-24 
 
 
 
NC_010084  Bmul_0775  cold-shock DNA-binding domain-containing protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia multivorans ATCC 17616  Bacteria  decreased coverage  0.0000000000150831  hitchhiker  0.000000000149768 
 
 
-
 
NC_010551  BamMC406_2438  cold-shock DNA-binding domain-containing protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia ambifaria MC40-6  Bacteria  unclonable  0.00000000000180609  unclonable  0.0000000000176576 
 
 
-
 
NC_009080  BMA10247_2156  cold-shock domain-contain protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.00000351487  n/a   
 
 
-
 
NC_008390  Bamb_2568  cold-shock DNA-binding domain-containing protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000000063088  n/a   
 
 
-
 
NC_013510  Tcur_0521  cold-shock DNA-binding domain protein  64.62 
 
 
67 aa  94.4  4e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1051  cold-shock domain-contain protein  64.18 
 
 
67 aa  94.7  4e-19  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000000117316  n/a   
 
 
-
 
NC_010678  Rpic_3782  cold-shock DNA-binding domain protein  64.62 
 
 
67 aa  94.4  4e-19  Ralstonia pickettii 12J  Bacteria  normal  0.0399631  normal  0.208523 
 
 
-
 
NC_002939  GSU1905  cold shock domain-contain protein  67.16 
 
 
66 aa  94.4  5e-19  Geobacter sulfurreducens PCA  Bacteria  unclonable  0.00000974395  n/a   
 
 
-
 
NC_003295  RSc2466  cold shock-like transcription regulator protein  64.18 
 
 
67 aa  94.4  5e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  0.4868  normal 
 
 
-
 
NC_012912  Dd1591_2974  cold shock protein CspE  72.13 
 
 
69 aa  94.4  5e-19  Dickeya zeae Ech1591  Bacteria  normal  0.0637761  n/a   
 
 
-
 
NC_010717  PXO_01731  hypothetical protein  64.06 
 
 
68 aa  94.4  5e-19  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5764  cold-shock DNA-binding domain-containing protein  64.06 
 
 
170 aa  94.4  5e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  hitchhiker  0.008002 
 
 
-
 
NC_013739  Cwoe_3948  cold-shock DNA-binding domain protein  65.62 
 
 
67 aa  94.4  5e-19  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0679  cold-shock DNA-binding protein family protein  64.62 
 
 
68 aa  94  6e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.233328  normal  0.774201 
 
 
-
 
NC_011146  Gbem_0208  cold-shock DNA-binding domain protein  71.21 
 
 
66 aa  94  6e-19  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000807689  n/a   
 
 
-
 
NC_012918  GM21_2005  cold-shock DNA-binding domain protein  68.66 
 
 
66 aa  93.6  7e-19  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.1727900000000003e-24 
 
 
-
 
NC_011146  Gbem_2222  cold-shock DNA-binding domain protein  68.66 
 
 
66 aa  93.6  7e-19  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000977172  n/a   
 
 
-
 
NC_007952  Bxe_B2780  cold-shock DNA-binding protein family protein  64.62 
 
 
67 aa  93.6  7e-19  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000626517  normal 
 
 
-
 
NC_007973  Rmet_2894  cold-shock DNA-binding protein family protein  62.69 
 
 
69 aa  93.6  7e-19  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.620309 
 
 
-
 
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