21 homologs were found in PanDaTox collection
for query gene Lcho_2530 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_2530  hypothetical protein  100 
 
 
182 aa  358  2e-98  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00527013 
 
 
-
 
NC_008781  Pnap_2741  hypothetical protein  41.81 
 
 
156 aa  126  2.0000000000000002e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.546085  normal  0.0263375 
 
 
-
 
NC_012791  Vapar_4894  hypothetical protein  41.9 
 
 
155 aa  117  9.999999999999999e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0756  periplasmic protein  33.57 
 
 
162 aa  51.6  0.000007  Pectobacterium wasabiae WPP163  Bacteria  normal  0.276898  n/a   
 
 
-
 
NC_012912  Dd1591_3500  protein of unknown function Spy-related  26.54 
 
 
158 aa  51.2  0.000008  Dickeya zeae Ech1591  Bacteria  normal  0.764021  n/a   
 
 
-
 
NC_009831  Ssed_0280  protein of unknown function, Spy-related  29.63 
 
 
168 aa  49.3  0.00003  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.00000525037  unclonable  0.0000000000829203 
 
 
-
 
NC_012917  PC1_0539  periplasmic protein  33.66 
 
 
162 aa  48.1  0.00008  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4741  periplasmic protein  28.42 
 
 
166 aa  47.8  0.0001  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0282  protein of unknown function Spy-related  31 
 
 
154 aa  47.8  0.0001  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000126692  unclonable  0.0000000242912 
 
 
-
 
NC_009438  Sputcn32_0368  protein of unknown function, Spy-related  32.26 
 
 
163 aa  46.2  0.0003  Shewanella putrefaciens CN-32  Bacteria  decreased coverage  0.000000528053  n/a   
 
 
-
 
NC_011149  SeAg_B1864  periplasmic protein  31.68 
 
 
161 aa  43.9  0.001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.978086  n/a   
 
 
-
 
NC_011205  SeD_A2037  periplasmic protein  31.68 
 
 
161 aa  43.9  0.001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.195484  normal 
 
 
-
 
NC_009436  Ent638_1701  periplasmic protein  30.69 
 
 
162 aa  43.9  0.001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0254  protein of unknown function, Spy-related  33.33 
 
 
163 aa  43.9  0.001  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.0000550011  hitchhiker  0.00000000161676 
 
 
-
 
NC_011094  SeSA_A1404  periplasmic protein  31.68 
 
 
161 aa  43.5  0.002  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.181136 
 
 
-
 
NC_009665  Shew185_0255  protein of unknown function Spy-related  29.55 
 
 
174 aa  42.7  0.003  Shewanella baltica OS185  Bacteria  decreased coverage  0.0000430973  n/a   
 
 
-
 
NC_008321  Shewmr4_0253  protein of unknown function, Spy-related  32.26 
 
 
163 aa  42  0.004  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000205349  hitchhiker  0.000372635 
 
 
-
 
NC_011083  SeHA_C1436  periplasmic protein  30.69 
 
 
161 aa  42.4  0.004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1421  periplasmic protein  30.69 
 
 
161 aa  42  0.005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.168395  normal 
 
 
-
 
NC_013456  VEA_002220  P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc- resistance associated protein  27.15 
 
 
170 aa  41.6  0.006  Vibrio sp. Ex25  Bacteria  unclonable  0.0000000285493  n/a   
 
 
-
 
NC_012880  Dd703_3377  protein of unknown function Spy-related  30.07 
 
 
157 aa  40.8  0.01  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
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