More than 300 homologs were found in PanDaTox collection
for query gene Lcho_1095 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  100 
 
 
255 aa  506  9.999999999999999e-143  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  82.21 
 
 
256 aa  424  1e-118  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  81.1 
 
 
255 aa  420  1e-116  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  82.61 
 
 
258 aa  418  1e-116  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  76.77 
 
 
255 aa  395  1e-109  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  74.1 
 
 
259 aa  378  1e-104  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  51.63 
 
 
256 aa  259  4e-68  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  51.28 
 
 
254 aa  256  2e-67  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_010511  M446_3606  binding-protein-dependent transport systems inner membrane component  47.64 
 
 
257 aa  240  1e-62  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.071611 
 
 
-
 
NC_007493  RSP_0942  ABC transporter, inner membrane subunit  41.74 
 
 
254 aa  174  9.999999999999999e-43  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2601  binding-protein-dependent transport systems inner membrane component  41.74 
 
 
254 aa  174  9.999999999999999e-43  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2973  binding-protein-dependent transport systems inner membrane component  41.74 
 
 
254 aa  173  1.9999999999999998e-42  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.107448 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
257 aa  169  3e-41  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.53 
 
 
254 aa  168  9e-41  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_009952  Dshi_1939  putative ABC transporter permease protein  41.1 
 
 
273 aa  159  6e-38  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.0000752264 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
274 aa  156  3e-37  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
283 aa  153  2e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  36.61 
 
 
284 aa  147  1.0000000000000001e-34  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
246 aa  140  1.9999999999999998e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  29.8 
 
 
281 aa  139  4.999999999999999e-32  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
257 aa  139  4.999999999999999e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  31.02 
 
 
259 aa  137  2e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  34.93 
 
 
258 aa  136  3.0000000000000003e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  31.98 
 
 
268 aa  136  4e-31  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
273 aa  134  1.9999999999999998e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  29.96 
 
 
261 aa  133  3e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  32.47 
 
 
251 aa  132  5e-30  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
273 aa  132  6e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
270 aa  130  3e-29  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  29.1 
 
 
265 aa  130  3e-29  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  35 
 
 
282 aa  129  3e-29  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
247 aa  129  4.0000000000000003e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  33.79 
 
 
250 aa  127  1.0000000000000001e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  31.33 
 
 
251 aa  127  2.0000000000000002e-28  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  33.33 
 
 
251 aa  126  3e-28  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  32.14 
 
 
250 aa  126  4.0000000000000003e-28  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  31.01 
 
 
279 aa  125  5e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  30.16 
 
 
250 aa  125  5e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  29.55 
 
 
249 aa  125  5e-28  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  27.49 
 
 
267 aa  125  5e-28  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  28.29 
 
 
267 aa  125  6e-28  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
263 aa  125  6e-28  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  28.19 
 
 
258 aa  125  8.000000000000001e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  31.47 
 
 
282 aa  125  8.000000000000001e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  32.88 
 
 
250 aa  124  1e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  32.88 
 
 
250 aa  124  1e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  31.87 
 
 
250 aa  124  1e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  32.88 
 
 
250 aa  124  1e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  32.88 
 
 
250 aa  124  1e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
251 aa  124  1e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  28.87 
 
 
253 aa  124  1e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
282 aa  124  2e-27  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  30.61 
 
 
288 aa  123  3e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  30.13 
 
 
268 aa  122  5e-27  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  32.08 
 
 
247 aa  122  6e-27  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
264 aa  121  9e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  25 
 
 
257 aa  120  1.9999999999999998e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  25 
 
 
265 aa  120  1.9999999999999998e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  25 
 
 
265 aa  120  1.9999999999999998e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  25 
 
 
257 aa  120  1.9999999999999998e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  25 
 
 
257 aa  120  1.9999999999999998e-26  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  25 
 
 
257 aa  120  3e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  24.6 
 
 
265 aa  120  3e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  28.87 
 
 
264 aa  120  3e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.09 
 
 
308 aa  119  3.9999999999999996e-26  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  27.48 
 
 
254 aa  119  4.9999999999999996e-26  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  24.6 
 
 
257 aa  119  6e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0154  binding-protein-dependent transport systems inner membrane component  26.78 
 
 
264 aa  119  6e-26  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  24.6 
 
 
255 aa  118  7.999999999999999e-26  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  24.22 
 
 
260 aa  118  7.999999999999999e-26  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  28.46 
 
 
252 aa  118  9e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  27.39 
 
 
266 aa  117  9.999999999999999e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  27.39 
 
 
266 aa  117  9.999999999999999e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
260 aa  117  1.9999999999999998e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  24.51 
 
 
256 aa  117  1.9999999999999998e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
250 aa  116  3e-25  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  28.95 
 
 
298 aa  116  3e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  24.8 
 
 
255 aa  117  3e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  29.03 
 
 
264 aa  116  3e-25  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  30.89 
 
 
272 aa  116  3e-25  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  30.56 
 
 
258 aa  116  3.9999999999999997e-25  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
277 aa  116  3.9999999999999997e-25  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
329 aa  115  5e-25  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  27.89 
 
 
258 aa  115  6.9999999999999995e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  29.65 
 
 
261 aa  115  7.999999999999999e-25  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  28.4 
 
 
258 aa  115  8.999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_010320  Teth514_2295  binding-protein-dependent transport systems inner membrane component  26.21 
 
 
272 aa  115  8.999999999999998e-25  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2803  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
259 aa  115  8.999999999999998e-25  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00122675  n/a   
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  30.56 
 
 
258 aa  115  8.999999999999998e-25  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  29.15 
 
 
281 aa  115  1.0000000000000001e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  26.58 
 
 
249 aa  114  1.0000000000000001e-24  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
273 aa  114  2.0000000000000002e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  29.74 
 
 
277 aa  114  2.0000000000000002e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  28.24 
 
 
274 aa  114  2.0000000000000002e-24  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
273 aa  114  2.0000000000000002e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  26.38 
 
 
267 aa  112  8.000000000000001e-24  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  28.06 
 
 
273 aa  111  9e-24  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_014151  Cfla_3017  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
253 aa  111  1.0000000000000001e-23  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.946292  normal 
 
 
-
 
NC_010001  Cphy_0802  binding-protein-dependent transport systems inner membrane component  27.76 
 
 
274 aa  111  1.0000000000000001e-23  Clostridium phytofermentans ISDg  Bacteria  normal  0.240571  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
281 aa  110  2.0000000000000002e-23  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
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