More than 300 homologs were found in PanDaTox collection
for query gene LGAS_1686 on replicon NC_008530
Organism: Lactobacillus gasseri ATCC 33323



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008530  LGAS_1686  transcriptional regulator  100 
 
 
272 aa  551  1e-156  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.0801516  hitchhiker  0.000000000302216 
 
 
-
 
NC_008527  LACR_1355  transcriptional regulator  40.07 
 
 
273 aa  215  5.9999999999999996e-55  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.906845  n/a   
 
 
-
 
NC_013515  Smon_1050  transcriptional regulator, RpiR family  34.54 
 
 
272 aa  159  5e-38  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_2295  RpiR family transcriptional regulator  39.06 
 
 
284 aa  147  2.0000000000000003e-34  Bacillus cereus ATCC 10987  Bacteria  normal  0.651664  n/a   
 
 
-
 
NC_011772  BCG9842_B3077  transcriptional regulator, RpiR family  39.06 
 
 
284 aa  147  2.0000000000000003e-34  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.0000143664 
 
 
-
 
NC_011725  BCB4264_A2246  transcriptional regulator, RpiR family  38.63 
 
 
284 aa  145  5e-34  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0182  RpiR family transcriptional regulator  34.65 
 
 
279 aa  145  9e-34  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2088  RpiR family transcriptional regulator  38.2 
 
 
284 aa  143  3e-33  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0949278  n/a   
 
 
-
 
NC_008262  CPR_0179  RpiR family transcriptional regulator  34.25 
 
 
279 aa  143  4e-33  Clostridium perfringens SM101  Bacteria  normal  0.912597  n/a   
 
 
-
 
NC_010320  Teth514_0168  RpiR family transcriptional regulator  34.25 
 
 
280 aa  141  9.999999999999999e-33  Thermoanaerobacter sp. X514  Bacteria  normal  0.057217  n/a   
 
 
-
 
NC_013517  Sterm_2433  transcriptional regulator, RpiR family  33.6 
 
 
282 aa  141  9.999999999999999e-33  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00000784459  n/a   
 
 
-
 
NC_011661  Dtur_1776  transcriptional regulator, RpiR family  32.92 
 
 
281 aa  140  3e-32  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1662  RpiR family transcriptional regulator  36.48 
 
 
284 aa  136  4e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.574027  n/a   
 
 
-
 
NC_014212  Mesil_0283  transcriptional regulator, RpiR family  33.47 
 
 
279 aa  135  6.0000000000000005e-31  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_0696  RpiR family transcriptional regulator  30.74 
 
 
289 aa  133  3e-30  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.000925251  n/a   
 
 
-
 
NC_013947  Snas_2756  transcriptional regulator, RpiR family  31.89 
 
 
298 aa  131  1.0000000000000001e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.688512  normal 
 
 
-
 
NC_013159  Svir_35980  transcriptional regulator, RpiR family  33.47 
 
 
333 aa  131  1.0000000000000001e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.309329  normal  0.261129 
 
 
-
 
NC_009708  YpsIP31758_1297  RpiR family transcriptional regulator  31.72 
 
 
292 aa  128  8.000000000000001e-29  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2619  RpiR family transcriptional regulator  31.62 
 
 
286 aa  128  8.000000000000001e-29  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1406  RpiR family transcriptional regulator  31.72 
 
 
292 aa  128  8.000000000000001e-29  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2771  RpiR family transcriptional regulator  31.34 
 
 
292 aa  127  2.0000000000000002e-28  Yersinia pestis Angola  Bacteria  normal  hitchhiker  0.00114132 
 
 
-
 
NC_007347  Reut_A1080  RpiR family transcriptional regulator  32.78 
 
 
318 aa  126  5e-28  Ralstonia eutropha JMP134  Bacteria  normal  0.0801962  n/a   
 
 
-
 
NC_007951  Bxe_A0588  RpiR family transcriptional regulator  31.82 
 
 
273 aa  125  5e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.189062  normal 
 
 
-
 
NC_010001  Cphy_3564  RpiR family transcriptional regulator  31.15 
 
 
284 aa  125  7e-28  Clostridium phytofermentans ISDg  Bacteria  normal  0.536409  n/a   
 
 
-
 
NC_009512  Pput_5258  RpiR family transcriptional regulator  31.62 
 
 
288 aa  125  8.000000000000001e-28  Pseudomonas putida F1  Bacteria  normal  normal  0.658899 
 
 
-
 
NC_002947  PP_5350  RpiR family transcriptional regulator  31.62 
 
 
288 aa  125  8.000000000000001e-28  Pseudomonas putida KT2440  Bacteria  normal  0.767126  hitchhiker  0.00410686 
 
 
-
 
NC_010501  PputW619_5127  RpiR family transcriptional regulator  31.62 
 
 
288 aa  125  9e-28  Pseudomonas putida W619  Bacteria  normal  normal  0.334763 
 
 
-
 
NC_010322  PputGB1_5399  RpiR family transcriptional regulator  31.62 
 
 
288 aa  125  1e-27  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0126961 
 
 
-
 
NC_011094  SeSA_A1192  transcriptional regulator, RpiR family  31.69 
 
 
293 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.497061  normal  0.760306 
 
 
-
 
NC_011083  SeHA_C1237  RpiR family transcriptional regulator  31.69 
 
 
293 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.676137 
 
 
-
 
NC_007492  Pfl01_5642  RpiR family transcriptional regulator  30.43 
 
 
288 aa  124  2e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.118263 
 
 
-
 
NC_011080  SNSL254_A1222  RpiR family transcriptional regulator  31.69 
 
 
293 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.514843 
 
 
-
 
NC_007973  Rmet_1044  RpiR family transcriptional regulator  33.2 
 
 
338 aa  124  2e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.408154  normal  0.734102 
 
 
-
 
NC_011205  SeD_A1202  RpiR family transcriptional regulator  31.69 
 
 
293 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.658823 
 
 
-
 
NC_010681  Bphyt_3371  transcriptional regulator, RpiR family  31.02 
 
 
281 aa  124  2e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0964604  hitchhiker  0.00000000707391 
 
 
-
 
NC_010003  Pmob_0521  RpiR family transcriptional regulator  33.96 
 
 
283 aa  123  3e-27  Petrotoga mobilis SJ95  Bacteria  normal  0.207231  n/a   
 
 
-
 
NC_009439  Pmen_4485  RpiR family transcriptional regulator  30.04 
 
 
288 aa  122  6e-27  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_71780  RpiR family transcriptional regulator  30.47 
 
 
293 aa  122  7e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0250  DNA-binding transcriptional repressor RpiR  31.25 
 
 
287 aa  122  7e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6227  putative transcriptional regulator  30.47 
 
 
293 aa  122  8e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_02030  transcriptional regulatory protein HexR  30.04 
 
 
288 aa  121  9e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0554  RpiR family transcriptional regulator  33.06 
 
 
282 aa  121  9.999999999999999e-27  Burkholderia ambifaria AMMD  Bacteria  normal  0.335525  n/a   
 
 
-
 
NC_011312  VSAL_I0898  HTH-type transcriptional regulator, rpiR family  30.74 
 
 
292 aa  121  9.999999999999999e-27  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.679683  n/a   
 
 
-
 
NC_010551  BamMC406_0580  RpiR family transcriptional regulator  33.06 
 
 
282 aa  121  9.999999999999999e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.658912  normal  0.89076 
 
 
-
 
NC_010508  Bcenmc03_0626  RpiR family transcriptional regulator  32.64 
 
 
282 aa  120  1.9999999999999998e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5515  transcriptional regulator, RpiR family  30.83 
 
 
288 aa  120  1.9999999999999998e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1468  transcriptional regulator, RpiR family  32.1 
 
 
286 aa  120  1.9999999999999998e-26  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000610661  n/a   
 
 
-
 
NC_007510  Bcep18194_A3745  RpiR family transcriptional regulator  32.64 
 
 
282 aa  120  1.9999999999999998e-26  Burkholderia sp. 383  Bacteria  normal  normal  0.767556 
 
 
-
 
NC_010622  Bphy_2581  RpiR family transcriptional regulator  30.99 
 
 
278 aa  121  1.9999999999999998e-26  Burkholderia phymatum STM815  Bacteria  normal  0.0624506  hitchhiker  0.000000255705 
 
 
-
 
NC_008060  Bcen_0176  RpiR family transcriptional regulator  32.64 
 
 
282 aa  120  1.9999999999999998e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0659  RpiR family transcriptional regulator  32.64 
 
 
282 aa  120  1.9999999999999998e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  0.78991  n/a   
 
 
-
 
NC_008836  BMA10229_A1223  RpiR family transcriptional regulator  32.1 
 
 
339 aa  120  3e-26  Burkholderia mallei NCTC 10229  Bacteria  normal  0.809611  n/a   
 
 
-
 
NC_006348  BMA2447  RpiR family transcriptional regulator  32.1 
 
 
332 aa  120  3e-26  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5064  helix-turn-helix protein RpiR:sugar isomerase (SIS)  30.83 
 
 
288 aa  120  3e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_3444  RpiR family transcriptional regulator  32.51 
 
 
339 aa  120  3e-26  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2634  RpiR family transcriptional regulator  32.1 
 
 
332 aa  120  3e-26  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3444  RpiR family transcriptional regulator  32.51 
 
 
332 aa  120  3e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3409  RpiR family transcriptional regulator  32.51 
 
 
332 aa  120  3e-26  Burkholderia pseudomallei 668  Bacteria  normal  0.977628  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0365  RpiR family transcriptional regulator  32.1 
 
 
332 aa  120  3e-26  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1216  RpiR family transcriptional regulator  33.06 
 
 
334 aa  119  4.9999999999999996e-26  Burkholderia thailandensis E264  Bacteria  normal  0.3152  n/a   
 
 
-
 
NC_007333  Tfu_2323  putative transcriptional regulator  30.15 
 
 
315 aa  117  1.9999999999999998e-25  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1025  bifunctional glucokinase/RpiR family transcriptional regulator  31.84 
 
 
638 aa  116  3.9999999999999997e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.745776  normal  0.175715 
 
 
-
 
NC_010551  BamMC406_0837  bifunctional glucokinase/RpiR family transcriptional regulator  31.84 
 
 
642 aa  116  5e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4022  transcriptional regulator, RpiR family  29.22 
 
 
320 aa  115  5e-25  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0204031  n/a   
 
 
-
 
NC_010084  Bmul_2724  RpiR family transcriptional regulator  32.64 
 
 
282 aa  115  5e-25  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0825  bifunctional glucokinase/RpiR family transcriptional regulator  31.84 
 
 
642 aa  115  5e-25  Burkholderia ambifaria AMMD  Bacteria  normal  0.125163  n/a   
 
 
-
 
NC_006348  BMA2132  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
641 aa  115  6.9999999999999995e-25  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2468  RpiR family transcriptional regulator  27.71 
 
 
296 aa  115  6.9999999999999995e-25  Sinorhizobium medicae WSM419  Bacteria  normal  0.899807  normal 
 
 
-
 
NC_007951  Bxe_A3454  bifunctional glucokinase/RpiR family transcriptional regulator  31.84 
 
 
638 aa  115  6.9999999999999995e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.0454105  normal  0.179776 
 
 
-
 
NC_008836  BMA10229_A2612  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
620 aa  115  7.999999999999999e-25  Burkholderia mallei NCTC 10229  Bacteria  normal  0.85018  n/a   
 
 
-
 
NC_009080  BMA10247_2002  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
620 aa  115  7.999999999999999e-25  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2433  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
642 aa  115  7.999999999999999e-25  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.399098  normal 
 
 
-
 
NC_008785  BMASAVP1_A0778  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
620 aa  115  7.999999999999999e-25  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1550  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
641 aa  115  8.999999999999998e-25  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3272  RpiR family transcriptional regulator  30.71 
 
 
289 aa  115  8.999999999999998e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.854433  n/a   
 
 
-
 
NC_010622  Bphy_0625  bifunctional glucokinase/RpiR family transcriptional regulator  31.84 
 
 
639 aa  115  8.999999999999998e-25  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3001  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
641 aa  115  1.0000000000000001e-24  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3090  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
641 aa  115  1.0000000000000001e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4068  bifunctional glucokinase/RpiR family transcriptional regulator  31.43 
 
 
642 aa  114  1.0000000000000001e-24  Burkholderia sp. 383  Bacteria  normal  0.0150237  normal 
 
 
-
 
NC_009076  BURPS1106A_3055  bifunctional glucokinase/RpiR family transcriptional regulator  31.56 
 
 
641 aa  115  1.0000000000000001e-24  Burkholderia pseudomallei 1106a  Bacteria  normal  0.570164  n/a   
 
 
-
 
NC_012034  Athe_1993  transcriptional regulator, RpiR family  26.59 
 
 
280 aa  114  1.0000000000000001e-24  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0926  bifunctional glucokinase/RpiR family transcriptional regulator  31.43 
 
 
642 aa  114  2.0000000000000002e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.789642  normal 
 
 
-
 
NC_008060  Bcen_0486  bifunctional glucokinase/RpiR family transcriptional regulator  31.43 
 
 
642 aa  114  2.0000000000000002e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0965  bifunctional glucokinase/RpiR family transcriptional regulator  31.43 
 
 
642 aa  114  2.0000000000000002e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0899614  n/a   
 
 
-
 
NC_008709  Ping_2360  DNA-binding transcriptional regulator HexR  29.57 
 
 
286 aa  114  2.0000000000000002e-24  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00190607 
 
 
-
 
NC_012560  Avin_27270  DNA-binding transcriptional regulator HexR  29.01 
 
 
289 aa  113  4.0000000000000004e-24  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4018  RpiR family transcriptional regulator  30.3 
 
 
284 aa  113  4.0000000000000004e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.772645  normal 
 
 
-
 
NC_009656  PSPA7_1946  DNA-binding transcriptional regulator HexR  29.88 
 
 
285 aa  113  4.0000000000000004e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  0.115145  n/a   
 
 
-
 
NC_007492  Pfl01_4364  DNA-binding transcriptional regulator HexR  28.24 
 
 
289 aa  112  8.000000000000001e-24  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.289688  normal 
 
 
-
 
NC_009953  Sare_3960  RpiR family transcriptional regulator  28.06 
 
 
304 aa  112  9e-24  Salinispora arenicola CNS-205  Bacteria  normal  0.162661  normal  0.59815 
 
 
-
 
NC_008463  PA14_23060  DNA-binding transcriptional regulator HexR  29.46 
 
 
285 aa  112  9e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00612438 
 
 
-
 
NC_009632  SaurJH1_0307  hypothetical protein  29.37 
 
 
266 aa  111  1.0000000000000001e-23  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4203  DNA-binding transcriptional regulator HexR  28.63 
 
 
290 aa  111  1.0000000000000001e-23  Pseudomonas putida W619  Bacteria  normal  0.988768  normal 
 
 
-
 
NC_013093  Amir_0269  transcriptional regulator, RpiR family  31.4 
 
 
304 aa  111  1.0000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.409833  n/a   
 
 
-
 
NC_009487  SaurJH9_0300  RpiR family transcriptional regulator  29.37 
 
 
266 aa  111  1.0000000000000001e-23  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1835  DNA-binding transcriptional regulator HexR  30.33 
 
 
290 aa  111  1.0000000000000001e-23  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0731  RpiR family transcriptional regulator  31.05 
 
 
287 aa  110  2.0000000000000002e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2031  DNA-binding transcriptional regulator HexR  28.79 
 
 
284 aa  110  2.0000000000000002e-23  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0294963  n/a   
 
 
-
 
NC_003909  BCE_0912  RpiR family transcriptional regulator  31.05 
 
 
287 aa  110  3e-23  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0875  putative transcriptional regulator, RpiR family  30.65 
 
 
287 aa  110  3e-23  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
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