More than 300 homologs were found in PanDaTox collection
for query gene Ksed_08590 on replicon NC_013169
Organism: Kytococcus sedentarius DSM 20547



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013169  Ksed_08590  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  100 
 
 
239 aa  482  1e-135  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.857083 
 
 
-
 
NC_007333  Tfu_2496  response regulator receiver  70.4 
 
 
225 aa  317  7.999999999999999e-86  Thermobifida fusca YX  Bacteria  normal  0.491467  n/a   
 
 
-
 
NC_013521  Sked_09340  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  69.51 
 
 
223 aa  317  9e-86  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.217912  normal  0.763127 
 
 
-
 
NC_013510  Tcur_4043  two component transcriptional regulator, winged helix family  71.04 
 
 
225 aa  317  1e-85  Thermomonospora curvata DSM 43183  Bacteria  normal  0.728877  n/a   
 
 
-
 
NC_013530  Xcel_2514  two component transcriptional regulator, winged helix family  71.17 
 
 
226 aa  316  2e-85  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.24701  n/a   
 
 
-
 
NC_013174  Jden_1827  two component transcriptional regulator, winged helix family  71.23 
 
 
227 aa  316  2e-85  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3815  two component transcriptional regulator, winged helix family  71.04 
 
 
225 aa  312  2.9999999999999996e-84  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0278114  normal  0.0118387 
 
 
-
 
NC_013757  Gobs_4285  two component transcriptional regulator, winged helix family  65.13 
 
 
238 aa  306  3e-82  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.83647  n/a   
 
 
-
 
NC_013093  Amir_6310  two component transcriptional regulator, winged helix family  68.16 
 
 
261 aa  303  1.0000000000000001e-81  Actinosynnema mirum DSM 43827  Bacteria  normal  0.534044  n/a   
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  66.82 
 
 
231 aa  302  3.0000000000000004e-81  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_008541  Arth_2712  two component transcriptional regulator  66.67 
 
 
224 aa  302  3.0000000000000004e-81  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00552555  n/a   
 
 
-
 
NC_008699  Noca_1433  response regulator receiver  67.22 
 
 
248 aa  302  4.0000000000000003e-81  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1240  two component transcriptional regulator, winged helix family  64.89 
 
 
227 aa  300  9e-81  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_013131  Caci_7594  two component transcriptional regulator, winged helix family  71.04 
 
 
228 aa  299  3e-80  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0426147 
 
 
-
 
NC_011886  Achl_2443  two component transcriptional regulator, winged helix family  66.67 
 
 
224 aa  299  3e-80  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00121019 
 
 
-
 
NC_008578  Acel_1765  two component transcriptional regulator  71.04 
 
 
225 aa  299  3e-80  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3745  two component transcriptional regulator, winged helix family  70.14 
 
 
225 aa  297  1e-79  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.5489  normal 
 
 
-
 
NC_014151  Cfla_2332  two component transcriptional regulator, winged helix family  70.14 
 
 
227 aa  296  2e-79  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0100882  decreased coverage  0.00000063533 
 
 
-
 
NC_013595  Sros_1412  response regulator receiver protein  71.04 
 
 
225 aa  296  3e-79  Streptosporangium roseum DSM 43021  Bacteria  normal  0.285013  normal  0.0125199 
 
 
-
 
NC_009953  Sare_0904  two component transcriptional regulator  67.11 
 
 
229 aa  295  6e-79  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0335314 
 
 
-
 
NC_009380  Strop_0967  response regulator receiver  67.11 
 
 
229 aa  294  7e-79  Salinispora tropica CNB-440  Bacteria  normal  0.359698  normal  0.873584 
 
 
-
 
NC_014165  Tbis_0770  winged helix family two component transcriptional regulator  70.59 
 
 
225 aa  294  8e-79  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.10066 
 
 
-
 
NC_013159  Svir_30940  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  68.16 
 
 
225 aa  289  3e-77  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4249  two component transcriptional regulator, winged helix family  70 
 
 
225 aa  287  8e-77  Nakamurella multipartita DSM 44233  Bacteria  normal  0.316157  normal 
 
 
-
 
NC_009565  TBFG_13275  two component system sensor transduction transcriptional regulatory protein mtrA  67.12 
 
 
228 aa  286  2.9999999999999996e-76  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.656178 
 
 
-
 
NC_008146  Mmcs_1347  two component transcriptional regulator  67.57 
 
 
228 aa  285  5.999999999999999e-76  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1365  two component transcriptional regulator  67.57 
 
 
228 aa  285  5.999999999999999e-76  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1752  two component transcriptional regulator  67.57 
 
 
228 aa  285  5.999999999999999e-76  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.581522 
 
 
-
 
NC_009077  Mjls_1381  two component transcriptional regulator  67.57 
 
 
228 aa  285  5.999999999999999e-76  Mycobacterium sp. JLS  Bacteria  normal  normal  0.497022 
 
 
-
 
NC_009338  Mflv_4712  two component transcriptional regulator  67.57 
 
 
228 aa  284  8e-76  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.541483  normal  0.0134498 
 
 
-
 
NC_012803  Mlut_14770  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  65.75 
 
 
226 aa  282  3.0000000000000004e-75  Micrococcus luteus NCTC 2665  Bacteria  normal  0.383411  n/a   
 
 
-
 
NC_013441  Gbro_3637  response regulator receiver  66.22 
 
 
225 aa  276  3e-73  Gordonia bronchialis DSM 43247  Bacteria  normal  0.135674  n/a   
 
 
-
 
NC_014158  Tpau_1076  two component transcriptional regulator, winged helix family  64.38 
 
 
228 aa  270  1e-71  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1849  two component transcriptional regulator, winged helix family  65.47 
 
 
229 aa  265  4e-70  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0042  response regulator  54.62 
 
 
240 aa  254  6e-67  Bifidobacterium longum DJO10A  Bacteria  normal  0.382747  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  47.77 
 
 
232 aa  222  4.9999999999999996e-57  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_143  DNA-binding response regulator, two-component system, OmpR family  49.34 
 
 
256 aa  221  7e-57  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_0200  two component transcriptional regulator, winged helix family  51.54 
 
 
242 aa  221  9.999999999999999e-57  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.0955644  n/a   
 
 
-
 
NC_009455  DehaBAV1_0235  two component transcriptional regulator  50.88 
 
 
230 aa  220  1.9999999999999999e-56  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0135  DNA-binding response regulator  50.22 
 
 
230 aa  219  3e-56  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2351  two component transcriptional regulator, winged helix family  51.6 
 
 
231 aa  218  8.999999999999998e-56  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.274912  n/a   
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  49.56 
 
 
236 aa  215  5.9999999999999996e-55  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0793  two component transcriptional regulator, winged helix family  49.77 
 
 
225 aa  212  2.9999999999999995e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  47.58 
 
 
235 aa  212  3.9999999999999995e-54  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  48.65 
 
 
230 aa  212  4.9999999999999996e-54  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  48.71 
 
 
237 aa  211  7.999999999999999e-54  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  47.58 
 
 
235 aa  211  1e-53  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  47.58 
 
 
235 aa  211  1e-53  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  47.58 
 
 
235 aa  211  1e-53  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  47.58 
 
 
235 aa  210  2e-53  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  47.58 
 
 
235 aa  210  2e-53  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  47.58 
 
 
235 aa  210  2e-53  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  47.58 
 
 
235 aa  210  2e-53  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  47.58 
 
 
235 aa  210  2e-53  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  47.58 
 
 
235 aa  210  2e-53  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  47.58 
 
 
235 aa  210  2e-53  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_011898  Ccel_1892  two component transcriptional regulator, winged helix family  47.06 
 
 
228 aa  210  2e-53  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000392  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  46.85 
 
 
230 aa  209  3e-53  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  48.43 
 
 
229 aa  209  3e-53  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  48.23 
 
 
228 aa  209  3e-53  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1288  two component transcriptional regulator  45.66 
 
 
228 aa  209  3e-53  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000000128008  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  45.45 
 
 
239 aa  208  6e-53  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  45.45 
 
 
239 aa  208  6e-53  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  49.13 
 
 
236 aa  208  6e-53  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  46.22 
 
 
232 aa  208  6e-53  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1832  two component transcriptional regulator  49.34 
 
 
245 aa  208  7e-53  Acidothermus cellulolyticus 11B  Bacteria  normal  0.366424  normal  0.561636 
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  48.43 
 
 
230 aa  207  1e-52  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  49.12 
 
 
233 aa  207  1e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  47.09 
 
 
233 aa  206  2e-52  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  47.09 
 
 
233 aa  206  2e-52  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  47.09 
 
 
233 aa  206  2e-52  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  48.25 
 
 
235 aa  206  2e-52  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  45.58 
 
 
226 aa  206  3e-52  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  48.88 
 
 
227 aa  206  3e-52  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_011830  Dhaf_1673  two component transcriptional regulator, winged helix family  46.85 
 
 
233 aa  206  3e-52  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  48.21 
 
 
242 aa  205  4e-52  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.559477 
 
 
-
 
NC_008530  LGAS_0064  DNA-binding response regulator  45.89 
 
 
235 aa  205  4e-52  Lactobacillus gasseri ATCC 33323  Bacteria  normal  0.611294  normal 
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  47.14 
 
 
235 aa  205  5e-52  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_0444  DNA-binding response regulator  46.32 
 
 
233 aa  205  5e-52  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  48.21 
 
 
242 aa  205  6e-52  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  45.21 
 
 
223 aa  204  8e-52  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  46.58 
 
 
239 aa  203  1e-51  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  47.32 
 
 
229 aa  204  1e-51  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  49.12 
 
 
236 aa  203  2e-51  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  47.3 
 
 
228 aa  203  2e-51  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  47.03 
 
 
224 aa  202  3e-51  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_011884  Cyan7425_1115  two component transcriptional regulator, winged helix family  48 
 
 
243 aa  203  3e-51  Cyanothece sp. PCC 7425  Bacteria  normal  0.0950226  normal 
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  46.09 
 
 
234 aa  202  4e-51  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_002936  DET1058  DNA-binding response regulator  46.58 
 
 
227 aa  201  6e-51  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.000187393  n/a   
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  49.12 
 
 
230 aa  201  6e-51  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  47.75 
 
 
228 aa  201  6e-51  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1116  DNA-binding response regulator  45.85 
 
 
235 aa  202  6e-51  Streptococcus thermophilus LMD-9  Bacteria  normal  0.310768  n/a   
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  47.75 
 
 
228 aa  201  6e-51  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  47.75 
 
 
228 aa  201  6e-51  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_013170  Ccur_11690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  48.23 
 
 
236 aa  201  8e-51  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.52451  normal 
 
 
-
 
NC_013172  Bfae_09290  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.51 
 
 
229 aa  201  8e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0105  DNA-binding response regulator  47.16 
 
 
237 aa  201  8e-51  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3871  two component transcriptional regulator, winged helix family  48.42 
 
 
227 aa  201  8e-51  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.0000000473157  n/a   
 
 
-
 
NC_008148  Rxyl_2983  two component transcriptional regulator  50.23 
 
 
228 aa  200  9.999999999999999e-51  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  47.32 
 
 
247 aa  201  9.999999999999999e-51  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
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