More than 300 homologs were found in PanDaTox collection
for query gene Hoch_4460 on replicon NC_013440
Organism: Haliangium ochraceum DSM 14365



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013440  Hoch_4460  putative transcriptional regulator, Crp/Fnr family  100 
 
 
171 aa  342  1e-93  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  38.52 
 
 
228 aa  82.8  0.000000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3831  cyclic nucleotide-binding protein  33.33 
 
 
435 aa  82.4  0.000000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0387698 
 
 
-
 
NC_013037  Dfer_1108  putative transcriptional regulator, Crp/Fnr family  35.97 
 
 
1075 aa  81.6  0.000000000000005  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.000733786  normal  0.267995 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  36.36 
 
 
225 aa  81.6  0.000000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  30.2 
 
 
225 aa  81.3  0.000000000000006  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  36.36 
 
 
225 aa  80.5  0.00000000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  34.04 
 
 
226 aa  79.3  0.00000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  32.89 
 
 
224 aa  79.7  0.00000000000002  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_013440  Hoch_3345  cyclic nucleotide-binding protein  32.72 
 
 
417 aa  79  0.00000000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.254717  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  33.1 
 
 
225 aa  78.6  0.00000000000004  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2905  cyclic nucleotide-binding protein  34.53 
 
 
157 aa  76.6  0.0000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0600936 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  38.1 
 
 
224 aa  77.4  0.0000000000001  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  33.33 
 
 
224 aa  75.9  0.0000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  32.65 
 
 
225 aa  75.9  0.0000000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0750  Crp/FNR family transcriptional regulator  31.62 
 
 
238 aa  73.6  0.000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  40.37 
 
 
563 aa  73.6  0.000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  36.89 
 
 
226 aa  73.2  0.000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  29.73 
 
 
220 aa  72.8  0.000000000002  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  37.93 
 
 
252 aa  73.2  0.000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  39.32 
 
 
228 aa  72.8  0.000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  38.46 
 
 
228 aa  72.4  0.000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4893  cyclic nucleotide-binding protein  34.88 
 
 
237 aa  72  0.000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_4027  cyclic nucleotide-binding protein  33.57 
 
 
413 aa  72.4  0.000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  31.54 
 
 
222 aa  72  0.000000000004  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  31.43 
 
 
228 aa  72  0.000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_007604  Synpcc7942_0664  cyclic nucleotide-binding  40 
 
 
449 aa  71.6  0.000000000005  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0101822  normal 
 
 
-
 
NC_011729  PCC7424_3804  MscS Mechanosensitive ion channel  33.62 
 
 
495 aa  71.6  0.000000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  29.63 
 
 
230 aa  71.2  0.000000000007  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  31.54 
 
 
229 aa  70.9  0.000000000009  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  35.61 
 
 
237 aa  70.9  0.000000000009  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_004578  PSPTO_3912  cyclic nucleotide-binding protein  34.82 
 
 
144 aa  70.5  0.00000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.262178  n/a   
 
 
-
 
NC_011884  Cyan7425_5091  MscS Mechanosensitive ion channel  32.68 
 
 
637 aa  70.5  0.00000000001  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.00148956  normal  0.0183068 
 
 
-
 
NC_007005  Psyr_1573  cyclic nucleotide-binding  35.45 
 
 
158 aa  70.5  0.00000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.490025  hitchhiker  0.00990577 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  34.53 
 
 
230 aa  70.1  0.00000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3370  putative transcriptional regulator, Crp/Fnr family  34.56 
 
 
425 aa  70.5  0.00000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  39.82 
 
 
225 aa  70.1  0.00000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  32.21 
 
 
225 aa  70.5  0.00000000001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  36.8 
 
 
237 aa  70.1  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  33.09 
 
 
219 aa  70.5  0.00000000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011726  PCC8801_2732  cyclic nucleotide-binding protein  34.56 
 
 
425 aa  70.5  0.00000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0144  cyclic nucleotide-binding domain-containing protein  30.66 
 
 
227 aa  70.1  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.993696  normal 
 
 
-
 
NC_007413  Ava_3692  cyclic nucleotide-binding domain-containing protein  30 
 
 
146 aa  69.7  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE2616  cyclic nucleotide-binding protein  34.95 
 
 
219 aa  69.3  0.00000000003  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0772  cyclic nucleotide-binding protein  31.21 
 
 
164 aa  68.9  0.00000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  32.21 
 
 
222 aa  68.9  0.00000000003  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  31.97 
 
 
225 aa  68.9  0.00000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  28.97 
 
 
236 aa  69.3  0.00000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  36.44 
 
 
225 aa  68.6  0.00000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_009767  Rcas_3910  cyclic nucleotide-binding protein  32.85 
 
 
167 aa  68.6  0.00000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.34683  normal  0.175845 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  32.64 
 
 
225 aa  68.6  0.00000000004  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_007947  Mfla_1926  cyclic nucleotide-binding domain-containing protein  29.8 
 
 
168 aa  68.2  0.00000000005  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3203  cyclic nucleotide-binding protein  32.86 
 
 
165 aa  68.2  0.00000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  33.09 
 
 
230 aa  68.2  0.00000000005  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  33.57 
 
 
220 aa  67.8  0.00000000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  27.7 
 
 
227 aa  67.8  0.00000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  31.43 
 
 
225 aa  67.8  0.00000000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5417  cyclic nucleotide-binding protein  27.01 
 
 
419 aa  68.2  0.00000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0881735  normal  0.0681678 
 
 
-
 
NC_009523  RoseRS_3727  cyclic nucleotide-binding protein  30.5 
 
 
167 aa  67.8  0.00000000007  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00887093 
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  33.09 
 
 
230 aa  67.8  0.00000000007  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_007492  Pfl01_1398  cyclic nucleotide-binding protein  36.52 
 
 
157 aa  67.4  0.00000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.908167  normal 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  32.87 
 
 
225 aa  67.8  0.00000000008  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  30.92 
 
 
243 aa  67.4  0.00000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  28.17 
 
 
223 aa  67.4  0.00000000009  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  32.39 
 
 
231 aa  67  0.0000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_002967  TDE0067  cyclic nucleotide-binding protein  32.74 
 
 
415 aa  67  0.0000000001  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  33.33 
 
 
224 aa  67.4  0.0000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  30.07 
 
 
231 aa  67.4  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  32.23 
 
 
214 aa  67  0.0000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  35.04 
 
 
242 aa  67  0.0000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  32.23 
 
 
219 aa  67  0.0000000001  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  30.14 
 
 
226 aa  66.2  0.0000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3761  putative Crp/Fnr family transcriptional regulator  27.97 
 
 
227 aa  66.2  0.0000000002  'Nostoc azollae' 0708  Bacteria  normal  0.0509841  n/a   
 
 
-
 
NC_009972  Haur_0306  cyclic nucleotide-binding protein  30.94 
 
 
166 aa  66.6  0.0000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5025  putative transcriptional regulator, Crp/Fnr family  33.33 
 
 
1056 aa  65.9  0.0000000003  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.00524189  normal 
 
 
-
 
NC_014248  Aazo_1954  putative Crp/Fnr family transcriptional regulator  29.29 
 
 
141 aa  65.9  0.0000000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  33.9 
 
 
225 aa  65.9  0.0000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_007604  Synpcc7942_1814  cyclic nucleotide-binding domain-containing protein  35.04 
 
 
242 aa  65.1  0.0000000004  Synechococcus elongatus PCC 7942  Bacteria  normal  0.38579  normal  0.245711 
 
 
-
 
NC_012918  GM21_1866  putative transcriptional regulator, Crp/Fnr family  36.04 
 
 
182 aa  64.7  0.0000000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010501  PputW619_3891  cyclic nucleotide-binding protein  30.37 
 
 
155 aa  64.7  0.0000000006  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6450  putative transcriptional regulator, Crp/Fnr family  33.93 
 
 
253 aa  64.3  0.0000000008  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  31.69 
 
 
227 aa  63.5  0.000000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1037  cyclic nucleotide-binding protein  26.92 
 
 
227 aa  63.5  0.000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.272663 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  31.34 
 
 
236 aa  63.5  0.000000001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE2725  cyclic nucleotide binding/GGDEF domain-containing protein  27.54 
 
 
322 aa  62.8  0.000000002  Treponema denticola ATCC 35405  Bacteria  normal  0.792666  n/a   
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  35.58 
 
 
233 aa  63.2  0.000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  35.61 
 
 
224 aa  63.2  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_009943  Dole_1878  cyclic nucleotide-binding protein  35.04 
 
 
275 aa  62.8  0.000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.116046  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  30.83 
 
 
226 aa  63.2  0.000000002  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  32.97 
 
 
224 aa  62  0.000000003  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009972  Haur_4167  cyclic nucleotide-binding protein  29.58 
 
 
570 aa  62.4  0.000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  32.97 
 
 
224 aa  62  0.000000003  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  28.57 
 
 
227 aa  62.4  0.000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  32.97 
 
 
224 aa  62  0.000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  30 
 
 
224 aa  62.8  0.000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  33.33 
 
 
228 aa  62  0.000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  32.14 
 
 
224 aa  61.6  0.000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0841  cyclic nucleotide-binding protein  29.93 
 
 
160 aa  62  0.000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.108052 
 
 
-
 
NC_008346  Swol_1598  hypothetical protein  31.93 
 
 
407 aa  62  0.000000004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.303519  n/a   
 
 
-
 
NC_010676  Bphyt_4598  cyclic nucleotide-binding protein  41.82 
 
 
414 aa  61.6  0.000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>