More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_1031 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014150  Bmur_2183  phosphoribosylformylglycinamidine synthase  48.12 
 
 
1252 aa  1159    Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2106  phosphoribosylformylglycinamidine synthase  48.97 
 
 
1244 aa  1165    Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0025  phosphoribosylformylglycinamidine synthase, putative  45.7 
 
 
1241 aa  1081    Streptococcus agalactiae 2603V/R  Bacteria  normal  0.435502  n/a   
 
 
-
 
NC_010001  Cphy_3350  phosphoribosylformylglycinamidine synthase  49.96 
 
 
1293 aa  1241    Clostridium phytofermentans ISDg  Bacteria  normal  0.611392  n/a   
 
 
-
 
NC_010816  BLD_0861  phosphoribosylformylglycinamidine synthase  70.92 
 
 
1244 aa  1865    Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_13720  phosphoribosylformylglycinamidine synthase  65.3 
 
 
1254 aa  1711    Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_1031  phosphoribosylformylglycinamidine synthase  100 
 
 
1251 aa  2591    Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013171  Apre_1107  phosphoribosylformylglycinamidine synthase  43.8 
 
 
1631 aa  984    Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0351  phosphoribosylformylglycinamidine synthase  63.67 
 
 
1251 aa  1645    Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0671  phosphoribosylformylglycinamidine synthase  51.22 
 
 
1266 aa  1278    Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0669  phosphoribosylformylglycinamidine synthase  52.01 
 
 
1266 aa  1290    Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_06520  phosphoribosylformylglycinamidine synthase  64.11 
 
 
1243 aa  1678    Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.57325 
 
 
-
 
NC_008532  STER_0050  phosphoribosylformylglycinamidine synthase II (FGAM synthetase)  45.84 
 
 
1241 aa  1081    Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0499  phosphoribosylformylglycinamidine synthase  54.9 
 
 
1256 aa  1366    Clostridium cellulolyticum H10  Bacteria  unclonable  0.000277776  n/a   
 
 
-
 
NC_011830  Dhaf_1471  phosphoribosylformylglycinamidine synthase  52.18 
 
 
1284 aa  1317    Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0680923  n/a   
 
 
-
 
NC_013515  Smon_0046  phosphoribosylformylglycinamidine synthase  48.33 
 
 
1236 aa  1174    Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013204  Elen_0262  phosphoribosylformylglycinamidine synthase  67.52 
 
 
1238 aa  1750    Eggerthella lenta DSM 2243  Bacteria  normal  0.414169  normal 
 
 
-
 
NC_008942  Mlab_0300  carbamoyl-phosphate synthase, large subunit  58.18 
 
 
1231 aa  1437    Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_009012  Cthe_0554  phosphoribosylformylglycinamidine synthase  53.51 
 
 
1256 aa  1342    Clostridium thermocellum ATCC 27405  Bacteria  normal  0.749527  n/a   
 
 
-
 
NC_013385  Adeg_0620  phosphoribosylformylglycinamidine synthase II  27.71 
 
 
945 aa  258  6e-67  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2372  phosphoribosylformylglycinamidine synthase II  25.58 
 
 
962 aa  254  9.000000000000001e-66  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0361  phosphoribosylformylglycinamidine synthase II  27.66 
 
 
953 aa  254  1e-65  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00613542  n/a   
 
 
-
 
NC_010424  Daud_1170  phosphoribosylformylglycinamidine synthase II  26.99 
 
 
947 aa  252  3e-65  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_1829  phosphoribosylformylglycinamidine synthase II  26.86 
 
 
966 aa  248  4.9999999999999997e-64  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_323  phosphoribosylformylglycinamidine synthase II  27.47 
 
 
953 aa  248  4.9999999999999997e-64  Dehalococcoides sp. VS  Bacteria  normal  0.0779511  n/a   
 
 
-
 
NC_002936  DET0379  phosphoribosylformylglycinamidine synthase II  27.29 
 
 
953 aa  247  9.999999999999999e-64  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2622  phosphoribosylformylglycinamidine synthase II  28.26 
 
 
985 aa  247  9.999999999999999e-64  Roseiflexus sp. RS-1  Bacteria  normal  0.0168341  normal 
 
 
-
 
NC_009767  Rcas_1795  phosphoribosylformylglycinamidine synthase II  28.62 
 
 
981 aa  242  4e-62  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0956476  normal 
 
 
-
 
NC_009972  Haur_3772  phosphoribosylformylglycinamidine synthase II  28.17 
 
 
959 aa  239  3e-61  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.384894  n/a   
 
 
-
 
NC_011831  Cagg_0213  phosphoribosylformylglycinamidine synthase II  28.35 
 
 
973 aa  227  1e-57  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE1279  phosphoribosylformylglycinamidine synthase II  28.39 
 
 
766 aa  213  2e-53  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_1629  phosphoribosylformylglycinamidine synthase  26.56 
 
 
979 aa  211  5e-53  Methanoculleus marisnigri JR1  Archaea  normal  0.521268  n/a   
 
 
-
 
NC_009637  MmarC7_1179  phosphoribosylformylglycinamidine synthase  25.46 
 
 
989 aa  202  3e-50  Methanococcus maripaludis C7  Archaea  normal  0.783256  normal 
 
 
-
 
NC_009712  Mboo_0472  phosphoribosylformylglycinamidine synthase  26.02 
 
 
982 aa  199  2.0000000000000003e-49  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.311423  normal  0.43995 
 
 
-
 
NC_009975  MmarC6_0772  phosphoribosylformylglycinamidine synthase  25.18 
 
 
989 aa  199  3e-49  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_007796  Mhun_1061  phosphoribosylformylglycinamidine synthase II  26.14 
 
 
979 aa  199  4.0000000000000005e-49  Methanospirillum hungatei JF-1  Archaea  normal  0.726589  normal  0.0660038 
 
 
-
 
NC_009135  MmarC5_1496  phosphoribosylformylglycinamidine synthase  25.18 
 
 
989 aa  197  1e-48  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_007498  Pcar_1328  phosphoribosylformylglycinamidine synthase glutamine amidotransferase subunit  25.7 
 
 
1020 aa  194  9e-48  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_3013  Phosphoribosylformylglycinamidine synthase  25.75 
 
 
993 aa  191  8e-47  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0545  phosphoribosylformylglycinamidine synthase  23.98 
 
 
1341 aa  183  2e-44  Psychrobacter sp. PRwf-1  Bacteria  normal  0.226471  unclonable  0.00000000702475 
 
 
-
 
NC_009457  VC0395_A0395  phosphoribosylformylglycinamidine synthase  24.13 
 
 
1297 aa  182  2.9999999999999997e-44  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1317  phosphoribosylformylglycinamidine synthase  24.64 
 
 
1293 aa  182  2.9999999999999997e-44  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_1503  phosphoribosylformylglycinamidine synthase  24.04 
 
 
1297 aa  182  2.9999999999999997e-44  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2350  phosphoribosylformylglycinamidine synthase  24.39 
 
 
1293 aa  182  2.9999999999999997e-44  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1078  phosphoribosylformylglycinamidine synthase  24.83 
 
 
1299 aa  182  2.9999999999999997e-44  Pseudomonas putida F1  Bacteria  normal  0.528102  normal 
 
 
-
 
NC_002947  PP_1037  phosphoribosylformylglycinamidine synthase  24.83 
 
 
1299 aa  182  4e-44  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1147  phosphoribosylformylglycinamidine synthase II  26.13 
 
 
996 aa  181  4.999999999999999e-44  Pelobacter propionicus DSM 2379  Bacteria  normal  0.540487  n/a   
 
 
-
 
NC_009634  Mevan_1183  phosphoribosylformylglycinamidine synthase  25.03 
 
 
993 aa  180  1e-43  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_012918  GM21_1889  Phosphoribosylformylglycinamidine synthase  24.74 
 
 
996 aa  180  2e-43  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011769  DvMF_2484  Phosphoribosylformylglycinamidine synthase  24.86 
 
 
1004 aa  179  3e-43  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_2411  Phosphoribosylformylglycinamidine synthase  24.65 
 
 
995 aa  179  3e-43  Desulfohalobium retbaense DSM 5692  Bacteria  normal  hitchhiker  0.00147677 
 
 
-
 
NC_009439  Pmen_3414  phosphoribosylformylglycinamidine synthase  24.72 
 
 
1298 aa  179  3e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1564  phosphoribosylformylglycinamidine synthase  24.56 
 
 
1293 aa  178  6e-43  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3119  phosphoribosylformylglycinamidine synthase  24.25 
 
 
1293 aa  177  8e-43  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_0912  phosphoribosylformylglycinamidine synthase II  25.73 
 
 
768 aa  177  9.999999999999999e-43  Aciduliprofundum boonei T469  Archaea  normal  0.137299  n/a   
 
 
-
 
NC_013456  VEA_004280  phosphoribosylformylglycinamidine synthase  23.83 
 
 
1297 aa  177  9.999999999999999e-43  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4189  phosphoribosylformylglycinamidine synthase  24.37 
 
 
1299 aa  177  9.999999999999999e-43  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_0534  phosphoribosylformylglycinamidine synthase II  27.42 
 
 
800 aa  177  9.999999999999999e-43  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal  0.6525 
 
 
-
 
NC_008751  Dvul_0206  phosphoribosylformylglycinamidine synthase  24.29 
 
 
993 aa  177  9.999999999999999e-43  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1034  phosphoribosylformylglycinamidine synthase  24.46 
 
 
1299 aa  176  1.9999999999999998e-42  Pseudomonas putida GB-1  Bacteria  normal  0.559579  normal  0.890548 
 
 
-
 
NC_008463  PA14_15740  phosphoribosylformylglycinamidine synthase  23.7 
 
 
1298 aa  177  1.9999999999999998e-42  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.989806  hitchhiker  0.000000174992 
 
 
-
 
NC_010814  Glov_2699  phosphoribosylformylglycinamidine synthase II  23.56 
 
 
996 aa  176  1.9999999999999998e-42  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0296  phosphoribosylformylglycinamidine synthase  24.38 
 
 
1234 aa  176  2.9999999999999996e-42  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.391304 
 
 
-
 
NC_009483  Gura_2066  phosphoribosylformylglycinamidine synthase II  24.8 
 
 
996 aa  176  2.9999999999999996e-42  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01150  phosphoribosylformylglycinamidine synthase  24.14 
 
 
1298 aa  176  2.9999999999999996e-42  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_4001  phosphoribosylformylglycinamidine synthase  24.94 
 
 
1299 aa  176  2.9999999999999996e-42  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00163478  normal 
 
 
-
 
NC_014165  Tbis_3339  phosphoribosylformylglycinamidine synthase II  28.38 
 
 
751 aa  176  2.9999999999999996e-42  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1459  phosphoribosylformylglycinamidine synthase  24.26 
 
 
1298 aa  175  3.9999999999999995e-42  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1223  phosphoribosylformylglycinamidine synthase  24.4 
 
 
1295 aa  174  5.999999999999999e-42  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_39660  phosphoribosylformylglycinamidine synthase  24.18 
 
 
1298 aa  174  7.999999999999999e-42  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1269  phosphoribosylformylglycinamidine synthase  24.18 
 
 
1298 aa  174  1e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0750  phosphoribosylformylglycinamidine synthase  24.4 
 
 
1309 aa  174  1e-41  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0887  phosphoribosylformylglycinamidine synthase  24.51 
 
 
1297 aa  174  1e-41  Methylobacillus flagellatus KT  Bacteria  normal  0.723631  normal  0.152972 
 
 
-
 
NC_007947  Mfla_1031  phosphoribosylformylglycinamidine synthase  24.51 
 
 
1297 aa  174  1e-41  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.691953 
 
 
-
 
NC_010002  Daci_4851  phosphoribosylformylglycinamidine synthase  23.79 
 
 
1342 aa  172  2e-41  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2331  AIR synthase related protein  24.8 
 
 
996 aa  172  2e-41  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1634  phosphoribosylformylglycinamidine synthase II, putative  25.73 
 
 
996 aa  172  3e-41  Geobacter sulfurreducens PCA  Bacteria  normal  0.494383  n/a   
 
 
-
 
NC_007798  NSE_0812  putative phosphoribosylformylglycinamidine synthase II  25.89 
 
 
946 aa  172  3e-41  Neorickettsia sennetsu str. Miyayama  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3052  phosphoribosylformylglycinamidine synthase  24.14 
 
 
1295 aa  171  6e-41  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1354  phosphoribosylformylglycinamidine synthase  23.22 
 
 
1298 aa  171  7e-41  Pseudomonas aeruginosa PA7  Bacteria  normal  0.297913  n/a   
 
 
-
 
NC_008321  Shewmr4_1238  phosphoribosylformylglycinamidine synthase  24.07 
 
 
1293 aa  171  7e-41  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1309  phosphoribosylformylglycinamidine synthase  23.98 
 
 
1293 aa  171  8e-41  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2484  phosphoribosylformylglycinamidine synthase  24.85 
 
 
1301 aa  170  1e-40  Marinobacter aquaeolei VT8  Bacteria  normal  0.234479  n/a   
 
 
-
 
NC_008576  Mmc1_0498  phosphoribosylformylglycinamidine synthase  23.52 
 
 
1295 aa  170  2e-40  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1240  phosphoribosylformylglycinamidine synthase  23.98 
 
 
1293 aa  170  2e-40  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1941  phosphoribosylformylglycinamidine synthase II  24.2 
 
 
996 aa  169  2.9999999999999998e-40  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3191  phosphoribosylformylglycinamidine synthase  24.6 
 
 
993 aa  169  4e-40  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0198403  n/a   
 
 
-
 
NC_007954  Sden_1273  phosphoribosylformylglycinamidine synthase  23.98 
 
 
1293 aa  169  4e-40  Shewanella denitrificans OS217  Bacteria  unclonable  0.000193442  n/a   
 
 
-
 
NC_013595  Sros_8978  Phosphoribosylformylglycinamidine synthase  26.9 
 
 
765 aa  169  4e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3287  phosphoribosylformylglycinamidine synthase  24.13 
 
 
1293 aa  168  5e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_014230  CA2559_06195  phosphoribosylformylglycinamidine synthase  23 
 
 
1214 aa  168  8e-40  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1141  phosphoribosylformylglycinamidine synthase  23.54 
 
 
1293 aa  167  1.0000000000000001e-39  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3138  phosphoribosylformylglycinamidine synthase  23.71 
 
 
1293 aa  166  2.0000000000000002e-39  Shewanella baltica OS195  Bacteria  normal  normal  0.217265 
 
 
-
 
NC_011883  Ddes_1913  Phosphoribosylformylglycinamidine synthase  24.33 
 
 
999 aa  166  4.0000000000000004e-39  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0999  phosphoribosylformylglycinamidine synthase  23.59 
 
 
1298 aa  165  4.0000000000000004e-39  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.346614 
 
 
-
 
NC_009052  Sbal_2980  phosphoribosylformylglycinamidine synthase  23.62 
 
 
1293 aa  164  7e-39  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0643  phosphoribosylformylglycinamidine synthase  22.68 
 
 
1306 aa  164  7e-39  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2642  phosphoribosylformylglycinamidine synthase  23.98 
 
 
1293 aa  164  1e-38  Shewanella putrefaciens CN-32  Bacteria  normal  0.873456  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0746  phosphoribosylformylglycinamidine synthase  22.68 
 
 
1296 aa  164  1e-38  Coxiella burnetii RSA 331  Bacteria  normal  0.0303153  n/a   
 
 
-
 
NC_011663  Sbal223_1383  phosphoribosylformylglycinamidine synthase  23.53 
 
 
1293 aa  162  4e-38  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
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