More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_0644 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  100 
 
 
261 aa  535  1e-151  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  65.67 
 
 
248 aa  324  8.000000000000001e-88  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  51.71 
 
 
231 aa  250  1e-65  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.38 
 
 
229 aa  245  6e-64  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  47.76 
 
 
239 aa  242  3.9999999999999997e-63  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  50.78 
 
 
233 aa  238  8e-62  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.41 
 
 
236 aa  238  1e-61  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  44.96 
 
 
225 aa  234  8e-61  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  45.9 
 
 
242 aa  232  5e-60  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  44.66 
 
 
218 aa  225  4e-58  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  44.66 
 
 
221 aa  225  5.0000000000000005e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  46.25 
 
 
225 aa  224  1e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  43.87 
 
 
226 aa  223  2e-57  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  46.83 
 
 
225 aa  223  3e-57  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  45.16 
 
 
221 aa  223  3e-57  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  45.49 
 
 
229 aa  223  3e-57  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  44.66 
 
 
222 aa  222  4e-57  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  45.25 
 
 
234 aa  222  4e-57  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  47.41 
 
 
239 aa  221  9.999999999999999e-57  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.92 
 
 
230 aa  221  9.999999999999999e-57  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  42.69 
 
 
250 aa  218  5e-56  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  46.22 
 
 
224 aa  218  6e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  43.14 
 
 
224 aa  218  1e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  45.45 
 
 
221 aa  217  1e-55  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  43.25 
 
 
244 aa  217  1e-55  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  44.88 
 
 
228 aa  217  2e-55  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  46.51 
 
 
249 aa  216  2e-55  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  44.66 
 
 
226 aa  216  2.9999999999999998e-55  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  43.75 
 
 
261 aa  216  4e-55  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  45.02 
 
 
226 aa  215  5.9999999999999996e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  47.6 
 
 
221 aa  215  5.9999999999999996e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  41.47 
 
 
224 aa  214  8e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  44.44 
 
 
223 aa  214  9e-55  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  45.63 
 
 
219 aa  214  9.999999999999999e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  43.08 
 
 
222 aa  213  1.9999999999999998e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013131  Caci_6094  two component transcriptional regulator, LuxR family  48.02 
 
 
235 aa  213  2.9999999999999995e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.634688  normal  0.121163 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  45.24 
 
 
220 aa  213  2.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  43.58 
 
 
230 aa  212  3.9999999999999995e-54  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  43.65 
 
 
241 aa  212  3.9999999999999995e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  42.86 
 
 
225 aa  212  5.999999999999999e-54  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  43.87 
 
 
230 aa  211  7e-54  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  44.27 
 
 
221 aa  211  7.999999999999999e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  44.49 
 
 
225 aa  211  9e-54  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  42.69 
 
 
221 aa  211  1e-53  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  43.87 
 
 
224 aa  210  1e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  46.09 
 
 
225 aa  210  2e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013595  Sros_1746  response regulator receiver protein  44.76 
 
 
217 aa  210  2e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  0.59096  normal  0.157721 
 
 
-
 
NC_014210  Ndas_4009  two component transcriptional regulator, LuxR family  42.23 
 
 
231 aa  209  3e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0669057  normal  0.324745 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  44.31 
 
 
225 aa  209  3e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  47.04 
 
 
224 aa  209  3e-53  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  43.08 
 
 
222 aa  209  3e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  46 
 
 
219 aa  209  3e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  43.43 
 
 
225 aa  209  5e-53  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  42.8 
 
 
223 aa  208  6e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  43.87 
 
 
215 aa  207  1e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  41.11 
 
 
228 aa  207  2e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  41.18 
 
 
247 aa  207  2e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  45.04 
 
 
234 aa  206  4e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  45.02 
 
 
227 aa  206  4e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.97 
 
 
244 aa  205  5e-52  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  42.91 
 
 
227 aa  205  5e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  40.87 
 
 
221 aa  205  5e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  42.8 
 
 
231 aa  205  6e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  47.18 
 
 
217 aa  205  6e-52  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  42.25 
 
 
230 aa  205  7e-52  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  45.24 
 
 
220 aa  205  7e-52  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  42.29 
 
 
226 aa  203  2e-51  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  41.67 
 
 
220 aa  203  2e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  42.46 
 
 
220 aa  203  3e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  39.44 
 
 
217 aa  202  3e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  44.05 
 
 
218 aa  202  4e-51  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  40.08 
 
 
230 aa  202  4e-51  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  42.29 
 
 
223 aa  202  5e-51  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  43.03 
 
 
221 aa  202  6e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  41.27 
 
 
226 aa  201  8e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  42.74 
 
 
213 aa  201  8e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  44.35 
 
 
216 aa  201  9e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  41.11 
 
 
227 aa  201  9.999999999999999e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  40.87 
 
 
232 aa  201  9.999999999999999e-51  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  42.69 
 
 
215 aa  200  1.9999999999999998e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  42.02 
 
 
239 aa  200  1.9999999999999998e-50  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  42.4 
 
 
214 aa  200  1.9999999999999998e-50  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  40.87 
 
 
226 aa  199  3e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  42.23 
 
 
241 aa  199  3e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  43.37 
 
 
224 aa  199  3e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  43.2 
 
 
234 aa  199  3.9999999999999996e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  41.11 
 
 
228 aa  199  3.9999999999999996e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  44.4 
 
 
220 aa  198  6e-50  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  44.8 
 
 
219 aa  198  6e-50  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.67 
 
 
225 aa  198  6e-50  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  40.64 
 
 
217 aa  198  7e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  38.65 
 
 
215 aa  197  1.0000000000000001e-49  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  40.32 
 
 
218 aa  197  1.0000000000000001e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  39.84 
 
 
218 aa  197  1.0000000000000001e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  43.2 
 
 
224 aa  197  2.0000000000000003e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  43.6 
 
 
219 aa  197  2.0000000000000003e-49  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  41.67 
 
 
218 aa  196  2.0000000000000003e-49  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  40.87 
 
 
220 aa  197  2.0000000000000003e-49  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  39.29 
 
 
228 aa  196  2.0000000000000003e-49  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013521  Sked_16860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.02 
 
 
258 aa  197  2.0000000000000003e-49  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.85724  normal  0.036031 
 
 
-
 
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