More than 300 homologs were found in PanDaTox collection
for query gene Gmet_1113 on replicon NC_007517
Organism: Geobacter metallireducens GS-15



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU2718  NAD-reducing hydrogenase, beta subunit  77.8 
 
 
478 aa  766    Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1113  nickel-dependent hydrogenase, large subunit  100 
 
 
476 aa  959    Geobacter metallireducens GS-15  Bacteria  normal  0.301961  normal 
 
 
-
 
NC_013161  Cyan8802_0092  nickel-dependent hydrogenase large subunit  57.47 
 
 
474 aa  582  1.0000000000000001e-165  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.643449 
 
 
-
 
NC_010814  Glov_2791  nickel-dependent hydrogenase large subunit  60 
 
 
482 aa  583  1.0000000000000001e-165  Geobacter lovleyi SZ  Bacteria  normal  0.119602  n/a   
 
 
-
 
NC_011726  PCC8801_0095  nickel-dependent hydrogenase large subunit  57.47 
 
 
474 aa  582  1.0000000000000001e-165  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_4160  nickel-dependent hydrogenase large subunit  58.11 
 
 
474 aa  579  1e-164  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2716  nickel-dependent hydrogenase, large subunit  57.89 
 
 
479 aa  572  1.0000000000000001e-162  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.892044  normal 
 
 
-
 
NC_009523  RoseRS_3539  nickel-dependent hydrogenase, large subunit  60.63 
 
 
474 aa  574  1.0000000000000001e-162  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4661  nickel-dependent hydrogenase, large subunit  57.26 
 
 
487 aa  568  1e-161  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1368  nickel-dependent hydrogenase large subunit  59.7 
 
 
475 aa  557  1e-157  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_4043  nickel-dependent hydrogenase large subunit  56.45 
 
 
473 aa  548  1e-155  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.0198059 
 
 
-
 
NC_011831  Cagg_2476  nickel-dependent hydrogenase large subunit  55.67 
 
 
473 aa  538  9.999999999999999e-153  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.795621  normal  0.410999 
 
 
-
 
NC_007604  Synpcc7942_2555  NAD-reducing hydrogenase HoxS beta subunit  54.03 
 
 
476 aa  515  1.0000000000000001e-145  Synechococcus elongatus PCC 7942  Bacteria  normal  0.148056  normal 
 
 
-
 
NC_011661  Dtur_0078  nickel-dependent hydrogenase large subunit  45.99 
 
 
474 aa  457  1e-127  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_2102  nickel-dependent hydrogenase large subunit  47.35 
 
 
472 aa  442  1e-123  Halorhabdus utahensis DSM 12940  Archaea  normal  0.782605  n/a   
 
 
-
 
NC_002977  MCA0114  NAD-reducing hydrogenase, beta subunit  45.57 
 
 
494 aa  404  1e-111  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0982  nickel-dependent hydrogenase, large subunit  44.42 
 
 
487 aa  404  1e-111  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3855  nickel-dependent hydrogenase, large subunit  44.09 
 
 
507 aa  401  9.999999999999999e-111  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2250  nickel-dependent hydrogenase large subunit  43.43 
 
 
488 aa  397  1e-109  Thauera sp. MZ1T  Bacteria  normal  0.0169608  n/a   
 
 
-
 
NC_011666  Msil_2748  nickel-dependent hydrogenase large subunit  45.03 
 
 
488 aa  394  1e-108  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010524  Lcho_1459  nickel-dependent hydrogenase large subunit  43.04 
 
 
504 aa  394  1e-108  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.720227 
 
 
-
 
NC_007953  Bxe_C0531  putative nickel-dependent hydrogenase, large subunit  41.81 
 
 
504 aa  389  1e-107  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1673  nickel-dependent hydrogenase, large subunit  42.92 
 
 
493 aa  384  1e-105  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.521628  n/a   
 
 
-
 
NC_002936  DET0615  hydrogenase, group 3, VhuA subunit, putative  41.58 
 
 
479 aa  380  1e-104  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0588  F420-non-reducing hydrogenase subunit A  40.96 
 
 
479 aa  380  1e-104  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204108  n/a   
 
 
-
 
NC_007973  Rmet_1525  nickel-dependent hydrogenase, large subunit  41.6 
 
 
488 aa  378  1e-103  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000894187  hitchhiker  0.00486844 
 
 
-
 
NC_013552  DhcVS_553  nickel-dependent hydrogenase, group 3, large subunit  42.54 
 
 
479 aa  377  1e-103  Dehalococcoides sp. VS  Bacteria  normal  0.0139726  n/a   
 
 
-
 
NC_008726  Mvan_4113  nickel-dependent hydrogenase, large subunit  42.16 
 
 
489 aa  365  1e-100  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0509028  normal  0.183384 
 
 
-
 
NC_008554  Sfum_2221  nickel-dependent hydrogenase, large subunit  41.56 
 
 
482 aa  356  5e-97  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.794889  normal  0.78316 
 
 
-
 
NC_009051  Memar_1007  nickel-dependent hydrogenase, large subunit  42.12 
 
 
455 aa  356  5.999999999999999e-97  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_008709  Ping_1215  nickel-dependent hydrogenase, large subunit  39.91 
 
 
499 aa  354  2e-96  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0417903 
 
 
-
 
NC_002939  GSU2419  nickel-dependent hydrogenase, large subunit  41.11 
 
 
473 aa  333  4e-90  Geobacter sulfurreducens PCA  Bacteria  normal  0.954862  n/a   
 
 
-
 
NC_007517  Gmet_3320  nickel-dependent hydrogenase, large subunit  40.6 
 
 
473 aa  327  2.0000000000000001e-88  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3537  nickel-dependent hydrogenase, large subunit  40.62 
 
 
469 aa  327  2.0000000000000001e-88  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3972  nickel-dependent hydrogenase large subunit  41.79 
 
 
473 aa  327  2.0000000000000001e-88  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000529156 
 
 
-
 
NC_009635  Maeo_0097  nickel-dependent hydrogenase large subunit  40.04 
 
 
475 aa  326  7e-88  Methanococcus aeolicus Nankai-3  Archaea  normal  0.325648  n/a   
 
 
-
 
NC_010814  Glov_1553  nickel-dependent hydrogenase large subunit  40.26 
 
 
479 aa  324  2e-87  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1791  hydrogen dehydrogenase  40.39 
 
 
449 aa  315  9e-85  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3884  nickel-dependent hydrogenase large subunit  40.51 
 
 
473 aa  315  1.9999999999999998e-84  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1651  nickel-dependent hydrogenase, large subunit  35.67 
 
 
485 aa  313  2.9999999999999996e-84  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2258  nickel-dependent hydrogenase large subunit  38.1 
 
 
486 aa  313  4.999999999999999e-84  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009135  MmarC5_0652  F420-non-reducing hydrogenase subunit A  38.44 
 
 
471 aa  313  5.999999999999999e-84  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0070  nickel-dependent hydrogenase large subunit  37.33 
 
 
471 aa  311  1e-83  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009634  Mevan_0996  nickel-dependent hydrogenase large subunit  38.86 
 
 
418 aa  311  2e-83  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1712  F420-non-reducing hydrogenase subunit A  37.86 
 
 
418 aa  309  5.9999999999999995e-83  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0977  nickel-dependent hydrogenase large subunit  37.62 
 
 
418 aa  309  6.999999999999999e-83  Methanococcus maripaludis C6  Archaea  normal  0.390644  n/a   
 
 
-
 
NC_009635  Maeo_1215  nickel-dependent hydrogenase large subunit  37.74 
 
 
418 aa  306  5.0000000000000004e-82  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0969  nickel-dependent hydrogenase large subunit  37.74 
 
 
418 aa  306  5.0000000000000004e-82  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_011891  A2cp1_4314  nickel-dependent hydrogenase large subunit  37.25 
 
 
494 aa  306  5.0000000000000004e-82  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4292  nickel-dependent hydrogenase large subunit  37.25 
 
 
494 aa  306  7e-82  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3954  nickel-dependent hydrogenase, large subunit  37.89 
 
 
449 aa  298  1e-79  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.644029 
 
 
-
 
NC_013385  Adeg_2013  nickel-dependent hydrogenase large subunit  35.06 
 
 
487 aa  298  2e-79  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3680  nickel-dependent hydrogenase large subunit  34.78 
 
 
509 aa  291  1e-77  Opitutus terrae PB90-1  Bacteria  normal  0.0782936  normal  0.503756 
 
 
-
 
NC_007760  Adeh_4162  nickel-dependent hydrogenase, large subunit  37.04 
 
 
494 aa  287  2e-76  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0906302  n/a   
 
 
-
 
NC_009675  Anae109_4306  nickel-dependent hydrogenase large subunit  37.27 
 
 
498 aa  279  9e-74  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.891144  normal  0.552071 
 
 
-
 
NC_008639  Cpha266_2169  nickel-dependent hydrogenase, large subunit  30.28 
 
 
424 aa  178  2e-43  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0245  hydrogenase/sulfur reductase, alpha subunit  30.5 
 
 
426 aa  175  1.9999999999999998e-42  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.392685  n/a   
 
 
-
 
NC_011059  Paes_1929  nickel-dependent hydrogenase large subunit  29.57 
 
 
425 aa  171  2e-41  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2660  Coenzyme F420 hydrogenase  30.57 
 
 
433 aa  167  2.9999999999999998e-40  Cyanothece sp. PCC 7425  Bacteria  normal  0.041142  normal 
 
 
-
 
NC_010803  Clim_2097  nickel-dependent hydrogenase large subunit  29.61 
 
 
424 aa  162  9e-39  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2499  nickel-dependent hydrogenase large subunit  28.79 
 
 
424 aa  162  1e-38  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_4496  nickel-dependent hydrogenase, large subunit  32.9 
 
 
430 aa  162  1e-38  Frankia sp. CcI3  Bacteria  normal  0.401222  normal 
 
 
-
 
NC_010831  Cphamn1_2132  nickel-dependent hydrogenase large subunit  29.13 
 
 
425 aa  161  3e-38  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.0448433  normal  0.0283043 
 
 
-
 
NC_013204  Elen_1256  nickel-dependent hydrogenase large subunit  27.37 
 
 
430 aa  153  7e-36  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013158  Huta_2605  nickel-dependent hydrogenase large subunit  29.72 
 
 
439 aa  152  8.999999999999999e-36  Halorhabdus utahensis DSM 12940  Archaea  normal  0.0537031  n/a   
 
 
-
 
NC_013501  Rmar_2590  nickel-dependent hydrogenase large subunit  30.87 
 
 
433 aa  152  1e-35  Rhodothermus marinus DSM 4252  Bacteria  normal  0.282401  n/a   
 
 
-
 
NC_007355  Mbar_A0452  coenzyme F420-reducing hydrogenase, alpha subunit  26.95 
 
 
456 aa  151  3e-35  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_011901  Tgr7_1138  nickel-dependent hydrogenase large subunit  29.81 
 
 
431 aa  151  3e-35  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3427  nickel-dependent hydrogenase, large subunit  29.91 
 
 
430 aa  150  5e-35  Mycobacterium sp. JLS  Bacteria  normal  normal  0.260108 
 
 
-
 
NC_011206  Lferr_1055  nickel-dependent hydrogenase large subunit  30.39 
 
 
432 aa  150  7e-35  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.620596 
 
 
-
 
NC_008578  Acel_1019  nickel-dependent hydrogenase, large subunit  30.87 
 
 
431 aa  149  8e-35  Acidothermus cellulolyticus 11B  Bacteria  normal  hitchhiker  0.00653003 
 
 
-
 
NC_011761  AFE_0937  [NiFe] hydrogenase, alpha subunit, putative  30.79 
 
 
422 aa  149  1.0000000000000001e-34  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.952693  n/a   
 
 
-
 
NC_008146  Mmcs_3416  nickel-dependent hydrogenase, large subunit  29.12 
 
 
430 aa  149  1.0000000000000001e-34  Mycobacterium sp. MCS  Bacteria  normal  0.291194  n/a   
 
 
-
 
NC_008705  Mkms_3479  nickel-dependent hydrogenase, large subunit  29.12 
 
 
430 aa  149  1.0000000000000001e-34  Mycobacterium sp. KMS  Bacteria  normal  0.441341  normal  0.0523033 
 
 
-
 
NC_007404  Tbd_1263  hypothetical protein  29.91 
 
 
433 aa  145  1e-33  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.321319  normal 
 
 
-
 
NC_007355  Mbar_A2287  coenzyme F420 hydrogenase, subunit alpha  27.95 
 
 
456 aa  144  4e-33  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.304616 
 
 
-
 
NC_013926  Aboo_0080  nickel-dependent hydrogenase large subunit  28.51 
 
 
421 aa  139  1e-31  Aciduliprofundum boonei T469  Archaea  normal  0.303597  n/a   
 
 
-
 
NC_009135  MmarC5_0649  coenzyme F420-reducing hydrogenase, alpha subunit  27.59 
 
 
410 aa  136  7.000000000000001e-31  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_011832  Mpal_0084  coenzyme F420 hydrogenase, subunit alpha  27.94 
 
 
455 aa  135  9.999999999999999e-31  Methanosphaerula palustris E1-9c  Archaea  decreased coverage  0.0042117  normal  0.0638209 
 
 
-
 
NC_010581  Bind_0507  nickel-dependent hydrogenase large subunit  30.89 
 
 
429 aa  134  3e-30  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_0884  nickel-dependent hydrogenase, large subunit  26.1 
 
 
432 aa  134  3e-30  Magnetococcus sp. MC-1  Bacteria  normal  0.912975  normal  0.251676 
 
 
-
 
NC_013595  Sros_4826  nickel-dependent hydrogenase large subunit  30.22 
 
 
428 aa  134  5e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.106762  normal 
 
 
-
 
NC_009483  Gura_1122  nickel-dependent hydrogenase, large subunit  29.98 
 
 
425 aa  132  1.0000000000000001e-29  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_0073  nickel-dependent hydrogenase large subunit  27.33 
 
 
410 aa  132  2.0000000000000002e-29  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  28.23 
 
 
514 aa  131  3e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  27.44 
 
 
481 aa  131  3e-29  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_007796  Mhun_2332  nickel-dependent hydrogenase, large subunit  28.66 
 
 
469 aa  130  4.0000000000000003e-29  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_009051  Memar_2174  nickel-dependent hydrogenase, large subunit  27.25 
 
 
455 aa  130  5.0000000000000004e-29  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_013947  Snas_3474  nickel-dependent hydrogenase large subunit  29.65 
 
 
432 aa  130  7.000000000000001e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.455292  normal 
 
 
-
 
NC_008942  Mlab_0015  coenzyme F420-reducing hydrogenase, alpha subunit  26.72 
 
 
455 aa  129  2.0000000000000002e-28  Methanocorpusculum labreanum Z  Archaea  normal  normal 
 
 
-
 
NC_014165  Tbis_1858  nickel-dependent hydrogenase large subunit  29.76 
 
 
428 aa  127  3e-28  Thermobispora bispora DSM 43833  Bacteria  normal  0.940457  normal 
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  28.6 
 
 
458 aa  126  1e-27  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_0692  nickel-dependent hydrogenase large subunit  28.44 
 
 
390 aa  121  3e-26  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009635  Maeo_1045  nickel-dependent hydrogenase large subunit  27.62 
 
 
385 aa  118  1.9999999999999998e-25  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_0627  nickel-dependent hydrogenase large subunit  27.27 
 
 
390 aa  117  5e-25  Methanococcus maripaludis C7  Archaea  normal  normal  0.931032 
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  28.05 
 
 
485 aa  117  6.9999999999999995e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_006368  lpp2532  hypothetical protein  25.38 
 
 
430 aa  116  8.999999999999998e-25  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_1968  nickel-dependent hydrogenase large subunit  27.43 
 
 
423 aa  116  1.0000000000000001e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1291  coenzyme F420 hydrogenase, subunit alpha  26.54 
 
 
390 aa  116  1.0000000000000001e-24  Methanococcus maripaludis C6  Archaea  normal  0.333817  n/a   
 
 
-
 
NC_009135  MmarC5_0196  nickel-dependent hydrogenase, large subunit  26.32 
 
 
390 aa  116  1.0000000000000001e-24  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
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