More than 300 homologs were found in PanDaTox collection
for query gene Gdia_0087 on replicon NC_011365
Organism: Gluconacetobacter diazotrophicus PAl 5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010725  Mpop_1830  1-deoxy-D-xylulose-5-phosphate synthase  62.48 
 
 
660 aa  787    Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4733  1-deoxy-D-xylulose-5-phosphate synthase  65.01 
 
 
643 aa  808    Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6796  1-deoxy-D-xylulose-5-phosphate synthase  67.71 
 
 
665 aa  834    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.180655  n/a   
 
 
-
 
NC_010505  Mrad2831_3459  1-deoxy-D-xylulose-5-phosphate synthase  63.82 
 
 
656 aa  801    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_010581  Bind_1811  1-deoxy-D-xylulose-5-phosphate synthase  64.24 
 
 
642 aa  816    Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.776218 
 
 
-
 
NC_009484  Acry_1833  1-deoxy-D-xylulose-5-phosphate synthase  70.68 
 
 
647 aa  920    Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7141  1-deoxy-D-xylulose-5-phosphate synthase  67.71 
 
 
654 aa  835    Methylobacterium nodulans ORS 2060  Bacteria  normal  0.994117  n/a   
 
 
-
 
NC_004310  BR0436  1-deoxy-D-xylulose-5-phosphate synthase  64.29 
 
 
643 aa  813    Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1022  1-deoxy-D-xylulose-5-phosphate synthase  63.9 
 
 
641 aa  831    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.221512  n/a   
 
 
-
 
NC_010172  Mext_4309  1-deoxy-D-xylulose-5-phosphate synthase  62.58 
 
 
658 aa  789    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2479  1-deoxy-D-xylulose-5-phosphate synthase  63.47 
 
 
641 aa  825    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2795  1-deoxy-D-xylulose-5-phosphate synthase  60.06 
 
 
637 aa  752    Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0564  1-deoxy-D-xylulose-5-phosphate synthase  60.12 
 
 
638 aa  777    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0633  1-deoxy-D-xylulose-5-phosphate synthase  63.02 
 
 
666 aa  818    Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.300424  normal 
 
 
-
 
NC_009428  Rsph17025_2027  1-deoxy-D-xylulose-5-phosphate synthase  59.56 
 
 
648 aa  741    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0722813  normal  0.799434 
 
 
-
 
NC_011989  Avi_0997  1-deoxy-D-xylulose-5-phosphate synthase  60.99 
 
 
639 aa  792    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0254  1-deoxy-D-xylulose-5-phosphate synthase  59.72 
 
 
648 aa  744    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1134  1-deoxy-D-xylulose-5-phosphate synthase  59.75 
 
 
637 aa  749    Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.310959  n/a   
 
 
-
 
NC_009511  Swit_1461  1-deoxy-D-xylulose-5-phosphate synthase  66.67 
 
 
639 aa  841    Sphingomonas wittichii RW1  Bacteria  normal  0.289953  normal 
 
 
-
 
NC_009952  Dshi_3294  1-deoxy-D-xylulose-5-phosphate synthase  61.3 
 
 
643 aa  760    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1897  1-deoxy-D-xylulose-5-phosphate synthase  59.88 
 
 
648 aa  745    Rhodobacter sphaeroides ATCC 17029  Bacteria  decreased coverage  0.00653181  normal  0.596808 
 
 
-
 
NC_009356  OSTLU_48774  1-deoxy-D-xylulose-5-phosphate synthase plastid precursor  52.51 
 
 
746 aa  696    Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.284634  n/a   
 
 
-
 
NC_012850  Rleg_0607  1-deoxy-D-xylulose-5-phosphate synthase  60.59 
 
 
638 aa  783    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.215846 
 
 
-
 
NC_007643  Rru_A0054  1-deoxy-D-xylulose-5-phosphate synthase  63.88 
 
 
645 aa  820    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2619  1-deoxy-D-xylulose-5-phosphate synthase  63.72 
 
 
645 aa  818    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0887721  n/a   
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  65.16 
 
 
650 aa  828    Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_007778  RPB_4460  1-deoxy-D-xylulose-5-phosphate synthase  62.77 
 
 
638 aa  818    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0161  1-deoxy-D-xylulose-5-phosphate synthase  64.16 
 
 
640 aa  827    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0088  1-deoxy-D-xylulose-5-phosphate synthase  58.02 
 
 
639 aa  730    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_0170  1-deoxy-D-xylulose-5-phosphate synthase  60.47 
 
 
636 aa  753    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1289  1-deoxy-D-xylulose-5-phosphate synthase  99.69 
 
 
704 aa  1323    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1149  1-deoxy-D-xylulose-5-phosphate synthase  63.85 
 
 
641 aa  827    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4305  1-deoxy-D-xylulose-5-phosphate synthase  64 
 
 
638 aa  826    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.302176  normal  0.192366 
 
 
-
 
NC_011757  Mchl_4678  1-deoxy-D-xylulose-5-phosphate synthase  62.58 
 
 
658 aa  790    Methylobacterium chloromethanicum CM4  Bacteria  normal  0.942989  normal  0.352645 
 
 
-
 
NC_007964  Nham_0778  1-deoxy-D-xylulose-5-phosphate synthase  62.83 
 
 
668 aa  824    Nitrobacter hamburgensis X14  Bacteria  normal  0.324929  n/a   
 
 
-
 
NC_010172  Mext_1939  1-deoxy-D-xylulose-5-phosphate synthase  62.95 
 
 
657 aa  787    Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008783  BARBAKC583_0400  1-deoxy-D-xylulose-5-phosphate synthase  60.31 
 
 
638 aa  782    Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2920  1-deoxy-D-xylulose-5-phosphate synthase  61.46 
 
 
645 aa  776    Ruegeria sp. TM1040  Bacteria  normal  normal  0.922761 
 
 
-
 
NC_008048  Sala_2354  1-deoxy-D-xylulose-5-phosphate synthase  64.23 
 
 
642 aa  826    Sphingopyxis alaskensis RB2256  Bacteria  normal  0.533243  normal  0.0503027 
 
 
-
 
NC_010338  Caul_3314  1-deoxy-D-xylulose-5-phosphate synthase  62.4 
 
 
638 aa  801    Caulobacter sp. K31  Bacteria  normal  normal  0.855639 
 
 
-
 
NC_008254  Meso_0735  1-deoxy-D-xylulose-5-phosphate synthase  63.14 
 
 
650 aa  832    Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0443  1-deoxy-D-xylulose-5-phosphate synthase  64.29 
 
 
643 aa  811    Brucella ovis ATCC 25840  Bacteria  normal  0.580074  n/a   
 
 
-
 
NC_010505  Mrad2831_3992  1-deoxy-D-xylulose-5-phosphate synthase  63.82 
 
 
664 aa  801    Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0302614 
 
 
-
 
NC_009428  Rsph17025_2792  1-deoxy-D-xylulose-5-phosphate synthase  60.06 
 
 
637 aa  754    Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.250893  normal 
 
 
-
 
NC_009952  Dshi_3526  1-deoxy-D-xylulose-5-phosphate synthase  61.63 
 
 
658 aa  763    Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4826  1-deoxy-D-xylulose-5-phosphate synthase  61.96 
 
 
658 aa  783    Methylobacterium populi BJ001  Bacteria  normal  0.459633  normal  0.588192 
 
 
-
 
NC_008347  Mmar10_0849  1-deoxy-D-xylulose-5-phosphate synthase  65.89 
 
 
643 aa  841    Maricaulis maris MCS10  Bacteria  normal  normal  0.313067 
 
 
-
 
NC_011757  Mchl_2215  1-deoxy-D-xylulose-5-phosphate synthase  62.79 
 
 
660 aa  786    Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  53.05 
 
 
622 aa  636    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6352  1-deoxy-D-xylulose-5-phosphate synthase  66.56 
 
 
654 aa  825    Methylobacterium sp. 4-46  Bacteria  normal  0.540512  normal  0.249842 
 
 
-
 
NC_009636  Smed_0492  1-deoxy-D-xylulose-5-phosphate synthase  62.19 
 
 
637 aa  798    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0717  1-deoxy-D-xylulose-5-phosphate synthase  63.48 
 
 
642 aa  805    Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008686  Pden_0400  1-deoxy-D-xylulose-5-phosphate synthase  62.23 
 
 
640 aa  780    Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.382014 
 
 
-
 
NC_009667  Oant_0547  1-deoxy-D-xylulose-5-phosphate synthase  64.19 
 
 
638 aa  829    Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6391  1-deoxy-D-xylulose-5-phosphate synthase  66.41 
 
 
663 aa  816    Methylobacterium sp. 4-46  Bacteria  normal  normal  0.144066 
 
 
-
 
NC_011365  Gdia_0087  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 
667 aa  1352    Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0603338  normal  0.251774 
 
 
-
 
NC_010524  Lcho_3373  deoxyxylulose-5-phosphate synthase  53.3 
 
 
639 aa  626  1e-178  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  52.42 
 
 
631 aa  623  1e-177  Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal 
 
 
-
 
NC_009253  Dred_1078  deoxyxylulose-5-phosphate synthase  50.31 
 
 
635 aa  624  1e-177  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0303047  n/a   
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  51.63 
 
 
653 aa  613  9.999999999999999e-175  Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  51.41 
 
 
614 aa  612  9.999999999999999e-175  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal 
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  51.23 
 
 
646 aa  612  1e-173  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1501  1-deoxy-D-xylulose-5-phosphate synthase  52.64 
 
 
636 aa  608  1e-173  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2015  1-deoxy-D-xylulose-5-phosphate synthase  52.02 
 
 
622 aa  609  1e-173  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0928222  hitchhiker  0.00382162 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  51.63 
 
 
635 aa  612  1e-173  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  50.77 
 
 
632 aa  611  1e-173  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2235  1-deoxy-D-xylulose-5-phosphate synthase  50.08 
 
 
622 aa  607  9.999999999999999e-173  Geobacter lovleyi SZ  Bacteria  normal  0.77755  n/a   
 
 
-
 
NC_009439  Pmen_3844  1-deoxy-D-xylulose-5-phosphate synthase  51.66 
 
 
631 aa  607  9.999999999999999e-173  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2211  1-deoxy-D-xylulose-5-phosphate synthase  51.41 
 
 
634 aa  608  9.999999999999999e-173  Burkholderia sp. 383  Bacteria  normal  0.41875  normal 
 
 
-
 
NC_009656  PSPA7_1057  1-deoxy-D-xylulose-5-phosphate synthase  51.96 
 
 
627 aa  607  9.999999999999999e-173  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3776  1-deoxy-D-xylulose-5-phosphate synthase  50.94 
 
 
634 aa  606  9.999999999999999e-173  Burkholderia ambifaria MC40-6  Bacteria  normal  0.495759  normal  0.0534173 
 
 
-
 
NC_010515  Bcenmc03_3648  1-deoxy-D-xylulose-5-phosphate synthase  50.94 
 
 
634 aa  607  9.999999999999999e-173  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2615  1-deoxy-D-xylulose-5-phosphate synthase  52.13 
 
 
637 aa  607  9.999999999999999e-173  Cupriavidus metallidurans CH34  Bacteria  normal  0.0207867  normal  0.922526 
 
 
-
 
NC_008061  Bcen_4486  1-deoxy-D-xylulose-5-phosphate synthase  50.94 
 
 
646 aa  608  9.999999999999999e-173  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3250  1-deoxy-D-xylulose-5-phosphate synthase  50.94 
 
 
646 aa  607  9.999999999999999e-173  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0235548 
 
 
-
 
NC_008543  Bcen2424_3879  1-deoxy-D-xylulose-5-phosphate synthase  50.94 
 
 
646 aa  608  9.999999999999999e-173  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.155835 
 
 
-
 
NC_007005  Psyr_0604  1-deoxy-D-xylulose-5-phosphate synthase  50.39 
 
 
630 aa  603  1.0000000000000001e-171  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.390731 
 
 
-
 
NC_007517  Gmet_2822  1-deoxy-D-xylulose-5-phosphate synthase  50.63 
 
 
635 aa  603  1.0000000000000001e-171  Geobacter metallireducens GS-15  Bacteria  normal  0.553695  normal  0.10664 
 
 
-
 
NC_011662  Tmz1t_1774  1-deoxy-D-xylulose-5-phosphate synthase  52.71 
 
 
622 aa  602  1.0000000000000001e-171  Thauera sp. MZ1T  Bacteria  normal  0.0951101  n/a   
 
 
-
 
NC_007948  Bpro_1747  1-deoxy-D-xylulose-5-phosphate synthase  51.63 
 
 
635 aa  602  1.0000000000000001e-171  Polaromonas sp. JS666  Bacteria  normal  normal  0.123274 
 
 
-
 
NC_002939  GSU0686  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
637 aa  598  1e-170  Geobacter sulfurreducens PCA  Bacteria  normal  0.351489  n/a   
 
 
-
 
NC_012560  Avin_20590  1-deoxy-D-xylulose-5-phosphate synthase  51.17 
 
 
633 aa  599  1e-170  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0882  1-deoxy-D-xylulose-5-phosphate synthase  50.62 
 
 
638 aa  601  1e-170  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1512  1-deoxy-D-xylulose-5-phosphate synthase  50.79 
 
 
651 aa  597  1e-169  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2033  1-deoxy-D-xylulose-5-phosphate synthase  50.31 
 
 
636 aa  597  1e-169  Ralstonia pickettii 12D  Bacteria  normal  0.720268  normal 
 
 
-
 
NC_004578  PSPTO_0698  deoxyxylulose-5-phosphate synthase  50 
 
 
631 aa  595  1e-169  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0330  1-deoxy-D-xylulose-5-phosphate synthase  50.79 
 
 
634 aa  596  1e-169  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  52.14 
 
 
618 aa  597  1e-169  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_007435  BURPS1710b_A0842  1-deoxy-D-xylulose-5-phosphate synthase  50.79 
 
 
634 aa  596  1e-169  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0956  1-deoxy-D-xylulose-5-phosphate synthase  51.31 
 
 
629 aa  598  1e-169  Acidovorax ebreus TPSY  Bacteria  normal  0.922207  n/a   
 
 
-
 
NC_009075  BURPS668_A2534  1-deoxy-D-xylulose-5-phosphate synthase  50.79 
 
 
634 aa  598  1e-169  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0364  1-deoxy-D-xylulose-5-phosphate synthase  50.79 
 
 
651 aa  597  1e-169  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1706  1-deoxy-D-xylulose-5-phosphate synthase  50.79 
 
 
651 aa  597  1e-169  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_07870  1-deoxy-D-xylulose-5-phosphate synthase  50.86 
 
 
633 aa  596  1e-169  Azotobacter vinelandii DJ  Bacteria  normal  0.587  n/a   
 
 
-
 
NC_008340  Mlg_1381  1-deoxy-D-xylulose-5-phosphate synthase  52.78 
 
 
628 aa  598  1e-169  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.604583  normal  0.510709 
 
 
-
 
NC_009078  BURPS1106A_A2392  1-deoxy-D-xylulose-5-phosphate synthase  50.79 
 
 
634 aa  596  1e-169  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1018  1-deoxy-D-xylulose-5-phosphate synthase  49.77 
 
 
637 aa  594  1e-168  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0614  1-deoxy-D-xylulose-5-phosphate synthase  50.63 
 
 
634 aa  593  1e-168  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_11550  1-deoxy-D-xylulose-5-phosphate synthase  51.49 
 
 
627 aa  594  1e-168  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2242  1-deoxy-D-xylulose-5-phosphate synthase  50.78 
 
 
638 aa  594  1e-168  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0315294 
 
 
-
 
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