More than 300 homologs were found in PanDaTox collection
for query gene Gbro_0172 on replicon NC_013441
Organism: Gordonia bronchialis DSM 43247



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  100 
 
 
307 aa  617  1e-176  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  53.8 
 
 
466 aa  317  2e-85  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  49.67 
 
 
409 aa  286  4e-76  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  51.38 
 
 
336 aa  282  6.000000000000001e-75  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  48.84 
 
 
306 aa  280  2e-74  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  49.83 
 
 
320 aa  277  2e-73  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5418  cell envelope-related transcriptional attenuator  50.34 
 
 
311 aa  274  1.0000000000000001e-72  Mycobacterium sp. JLS  Bacteria  normal  normal  0.710746 
 
 
-
 
NC_008146  Mmcs_5038  cell envelope-related transcriptional attenuator  50.34 
 
 
311 aa  274  2.0000000000000002e-72  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5126  cell envelope-related transcriptional attenuator  50.34 
 
 
311 aa  274  2.0000000000000002e-72  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  47.75 
 
 
404 aa  273  3e-72  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  47.59 
 
 
326 aa  263  3e-69  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_013510  Tcur_1808  cell envelope-related transcriptional attenuator  51.71 
 
 
424 aa  260  2e-68  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0292903  n/a   
 
 
-
 
NC_014210  Ndas_3959  cell envelope-related transcriptional attenuator  43.96 
 
 
463 aa  253  4.0000000000000004e-66  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  53.5 
 
 
307 aa  253  4.0000000000000004e-66  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_013169  Ksed_08470  cell envelope-related function transcriptional attenuator common domain protein  43.09 
 
 
394 aa  226  2e-58  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.282031 
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  41.31 
 
 
296 aa  217  2e-55  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  37.29 
 
 
497 aa  206  4e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3901  cell envelope-related transcriptional attenuator  43.89 
 
 
407 aa  202  5e-51  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0120062 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  39.54 
 
 
509 aa  202  6e-51  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1865  cell envelope-related transcriptional attenuator  41.36 
 
 
434 aa  197  2.0000000000000003e-49  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0368682 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  41.73 
 
 
393 aa  195  8.000000000000001e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2595  cell envelope-related transcriptional attenuator  40 
 
 
313 aa  191  2e-47  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1395  cell envelope-related transcriptional attenuator  40.13 
 
 
404 aa  191  2e-47  Nocardioides sp. JS614  Bacteria  normal  0.330473  n/a   
 
 
-
 
NC_012669  Bcav_1165  cell envelope-related protein transcriptional attenuator  42.97 
 
 
363 aa  189  5.999999999999999e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  37.88 
 
 
434 aa  188  1e-46  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  39.66 
 
 
505 aa  183  3e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_014151  Cfla_2384  cell envelope-related transcriptional attenuator  36.93 
 
 
303 aa  179  5.999999999999999e-44  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.174416  hitchhiker  0.00797054 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  38.46 
 
 
390 aa  174  1.9999999999999998e-42  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  41.49 
 
 
504 aa  174  1.9999999999999998e-42  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  37.55 
 
 
486 aa  172  5e-42  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  39.64 
 
 
491 aa  165  8e-40  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  38.49 
 
 
512 aa  162  7e-39  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  36.88 
 
 
545 aa  160  3e-38  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  35.17 
 
 
560 aa  159  4e-38  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  38.65 
 
 
521 aa  158  1e-37  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  37.45 
 
 
573 aa  156  5.0000000000000005e-37  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  37.26 
 
 
625 aa  155  1e-36  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4737  cell envelope-related transcriptional attenuator  33.68 
 
 
493 aa  151  1e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.440107  normal 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  32.99 
 
 
493 aa  150  2e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  36.51 
 
 
420 aa  149  6e-35  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13296  CPSA-related protein  40.18 
 
 
497 aa  148  1.0000000000000001e-34  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000000747689  normal 
 
 
-
 
NC_010816  BLD_0762  transcriptional regulator  33.46 
 
 
489 aa  148  1.0000000000000001e-34  Bifidobacterium longum DJO10A  Bacteria  normal  0.245721  n/a   
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  35.5 
 
 
414 aa  148  1.0000000000000001e-34  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  37.92 
 
 
567 aa  148  1.0000000000000001e-34  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  33.08 
 
 
516 aa  144  2e-33  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1318  cell envelope-related transcriptional attenuator  38.22 
 
 
490 aa  144  2e-33  Mycobacterium sp. MCS  Bacteria  normal  0.940107  n/a   
 
 
-
 
NC_008705  Mkms_1335  cell envelope-related transcriptional attenuator  38.22 
 
 
490 aa  144  2e-33  Mycobacterium sp. KMS  Bacteria  normal  0.962054  normal  0.634397 
 
 
-
 
NC_009077  Mjls_1354  cell envelope-related transcriptional attenuator  38.22 
 
 
490 aa  144  2e-33  Mycobacterium sp. JLS  Bacteria  normal  0.0429862  normal  0.395159 
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  34.31 
 
 
410 aa  140  1.9999999999999998e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  35.74 
 
 
732 aa  140  3e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  39.17 
 
 
481 aa  140  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  32.46 
 
 
468 aa  139  4.999999999999999e-32  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  35.32 
 
 
530 aa  139  6e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  34.23 
 
 
520 aa  138  1e-31  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  37.39 
 
 
549 aa  138  1e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  37.4 
 
 
522 aa  138  1e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  37.72 
 
 
468 aa  137  2e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  32.97 
 
 
478 aa  137  3.0000000000000003e-31  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  40.81 
 
 
381 aa  137  3.0000000000000003e-31  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  32.12 
 
 
400 aa  135  8e-31  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  32.41 
 
 
465 aa  135  9e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  39.44 
 
 
676 aa  135  9.999999999999999e-31  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3228  cell envelope-related transcriptional attenuator  38.81 
 
 
377 aa  135  9.999999999999999e-31  Arthrobacter sp. FB24  Bacteria  normal  0.0471557  n/a   
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  35.57 
 
 
382 aa  132  6e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  38.16 
 
 
349 aa  132  7.999999999999999e-30  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4511  transcription attenuator LytR  38.98 
 
 
358 aa  130  2.0000000000000002e-29  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  37.23 
 
 
506 aa  131  2.0000000000000002e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  34.94 
 
 
517 aa  130  3e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_013721  HMPREF0424_0588  putative transcriptional regulator  30.22 
 
 
432 aa  129  9.000000000000001e-29  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.952975 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  31.51 
 
 
480 aa  127  2.0000000000000002e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_013204  Elen_3081  cell envelope-related transcriptional attenuator  32.97 
 
 
531 aa  127  2.0000000000000002e-28  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  31.88 
 
 
453 aa  126  5e-28  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  31.52 
 
 
584 aa  125  7e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2366  cell envelope-related transcriptional attenuator  37.62 
 
 
319 aa  125  1e-27  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000181907  unclonable  0.00000001 
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  37.27 
 
 
362 aa  124  2e-27  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  36.27 
 
 
481 aa  124  2e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4212  cell envelope-related transcriptional attenuator  30.19 
 
 
496 aa  124  2e-27  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.134321 
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  31.95 
 
 
618 aa  124  3e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_012803  Mlut_08810  cell envelope-related function transcriptional attenuator common domain protein  32.23 
 
 
374 aa  122  9.999999999999999e-27  Micrococcus luteus NCTC 2665  Bacteria  normal  0.155806  n/a   
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  34.24 
 
 
417 aa  121  9.999999999999999e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  32.03 
 
 
734 aa  120  1.9999999999999998e-26  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_01960  cell envelope-related function transcriptional attenuator common domain protein  37.57 
 
 
490 aa  120  1.9999999999999998e-26  Slackia heliotrinireducens DSM 20476  Bacteria  hitchhiker  0.00481524  normal 
 
 
-
 
NC_013093  Amir_6814  cell envelope-related transcriptional attenuator  34.15 
 
 
1336 aa  119  6e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_03580  cell envelope-related function transcriptional attenuator common domain protein  38.22 
 
 
448 aa  119  9e-26  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.742286  normal  0.880699 
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  38.31 
 
 
419 aa  118  9.999999999999999e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_013385  Adeg_1973  cell envelope-related transcriptional attenuator  41.21 
 
 
418 aa  118  9.999999999999999e-26  Ammonifex degensii KC4  Bacteria  normal  0.554316  n/a   
 
 
-
 
NC_009953  Sare_5021  cell envelope-related transcriptional attenuator  35.96 
 
 
312 aa  118  1.9999999999999998e-25  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00237783 
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  37.09 
 
 
395 aa  116  5e-25  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  36.36 
 
 
619 aa  115  8.999999999999998e-25  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_013235  Namu_4976  cell envelope-related transcriptional attenuator  36.6 
 
 
551 aa  115  8.999999999999998e-25  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0711  cell envelope-related transcriptional attenuator  33.74 
 
 
526 aa  114  1.0000000000000001e-24  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_06070  cell envelope-related function transcriptional attenuator common domain protein  32.88 
 
 
514 aa  114  2.0000000000000002e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.974325  normal  0.0563121 
 
 
-
 
NC_011886  Achl_3034  cell envelope-related transcriptional attenuator  37.04 
 
 
379 aa  113  4.0000000000000004e-24  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.63975 
 
 
-
 
NC_007644  Moth_1399  cell envelope-related transcriptional attenuator  40.61 
 
 
414 aa  113  4.0000000000000004e-24  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1145  cell envelope-related transcriptional attenuator  32.06 
 
 
543 aa  113  4.0000000000000004e-24  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  36.36 
 
 
512 aa  112  6e-24  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_013165  Shel_01950  cell envelope-related function transcriptional attenuator common domain protein  40.8 
 
 
516 aa  112  9e-24  Slackia heliotrinireducens DSM 20476  Bacteria  decreased coverage  0.000132864  normal 
 
 
-
 
NC_013159  Svir_06080  cell envelope-related function transcriptional attenuator common domain protein  32.06 
 
 
538 aa  112  9e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.832186  normal  0.188153 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  33.59 
 
 
379 aa  112  1.0000000000000001e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  33.04 
 
 
380 aa  111  1.0000000000000001e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
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