More than 300 homologs were found in PanDaTox collection
for query gene Gbem_3392 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012918  GM21_0854  methyl-accepting chemotaxis sensory transducer  95.38 
 
 
563 aa  1085    Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3392  methyl-accepting chemotaxis sensory transducer  100 
 
 
563 aa  1137    Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000826486  n/a   
 
 
-
 
NC_009483  Gura_4222  methyl-accepting chemotaxis sensory transducer  57.75 
 
 
567 aa  629  1e-179  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0165  methyl-accepting chemotaxis sensory transducer  30.58 
 
 
568 aa  193  6e-48  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3281  methyl-accepting chemotaxis sensory transducer  34.66 
 
 
736 aa  185  2.0000000000000003e-45  Geobacter uraniireducens Rf4  Bacteria  normal  0.494868  n/a   
 
 
-
 
NC_009012  Cthe_2819  methyl-accepting chemotaxis sensory transducer  32.61 
 
 
1474 aa  180  4.999999999999999e-44  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0063  methyl-accepting chemotaxis sensory transducer  30.28 
 
 
688 aa  180  4.999999999999999e-44  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2283  methyl-accepting chemotaxis sensory transducer  34.27 
 
 
1475 aa  180  5.999999999999999e-44  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0075  methyl-accepting chemotaxis sensory transducer  30.28 
 
 
688 aa  180  7e-44  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0058  methyl-accepting chemotaxis sensory transducer  30 
 
 
688 aa  178  3e-43  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2478  methyl-accepting chemotaxis sensory transducer  31.03 
 
 
733 aa  169  1e-40  Geobacter metallireducens GS-15  Bacteria  normal  0.513858  normal 
 
 
-
 
NC_002939  GSU2372  methyl-accepting chemotaxis protein, putative  30.71 
 
 
727 aa  166  1.0000000000000001e-39  Geobacter sulfurreducens PCA  Bacteria  normal  0.204529  n/a   
 
 
-
 
NC_002939  GSU0766  methyl-accepting chemotaxis protein, putative  28.82 
 
 
745 aa  165  2.0000000000000002e-39  Geobacter sulfurreducens PCA  Bacteria  normal  0.696907  n/a   
 
 
-
 
NC_009483  Gura_0349  methyl-accepting chemotaxis sensory transducer  32.43 
 
 
695 aa  164  5.0000000000000005e-39  Geobacter uraniireducens Rf4  Bacteria  normal  0.0100327  n/a   
 
 
-
 
NC_010814  Glov_1239  methyl-accepting chemotaxis sensory transducer  31.05 
 
 
719 aa  161  2e-38  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2938  methyl-accepting chemotaxis sensory transducer  29.56 
 
 
564 aa  157  5.0000000000000005e-37  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.0000000000740162 
 
 
-
 
NC_007517  Gmet_1641  methyl-accepting chemotaxis sensory transducer with GAF sensor  32.41 
 
 
663 aa  154  5e-36  Geobacter metallireducens GS-15  Bacteria  normal  0.0112406  normal 
 
 
-
 
NC_002939  GSU0583  methyl-accepting chemotaxis protein  32.99 
 
 
538 aa  152  1e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0894  methyl-accepting chemotaxis sensory transducer  30.13 
 
 
734 aa  151  3e-35  Geobacter sp. M21  Bacteria  n/a    hitchhiker  1.23916e-31 
 
 
-
 
NC_011146  Gbem_3351  methyl-accepting chemotaxis sensory transducer  30.13 
 
 
734 aa  151  4e-35  Geobacter bemidjiensis Bem  Bacteria  normal  0.0143974  n/a   
 
 
-
 
NC_009483  Gura_2077  methyl-accepting chemotaxis sensory transducer  31.34 
 
 
663 aa  149  2.0000000000000003e-34  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000251659  n/a   
 
 
-
 
NC_002939  GSU1704  methyl-accepting chemotaxis protein, putative  30.75 
 
 
663 aa  147  5e-34  Geobacter sulfurreducens PCA  Bacteria  normal  0.034056  n/a   
 
 
-
 
NC_012918  GM21_3761  methyl-accepting chemotaxis sensory transducer  29.04 
 
 
822 aa  147  5e-34  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009483  Gura_4018  methyl-accepting chemotaxis sensory transducer  29.56 
 
 
713 aa  144  4e-33  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000208845  n/a   
 
 
-
 
NC_011146  Gbem_3654  methyl-accepting chemotaxis sensory transducer  30.47 
 
 
822 aa  143  7e-33  Geobacter bemidjiensis Bem  Bacteria  normal  0.720146  n/a   
 
 
-
 
NC_011146  Gbem_3013  methyl-accepting chemotaxis sensory transducer with GAF sensor  31.63 
 
 
699 aa  143  9.999999999999999e-33  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2889  methyl-accepting chemotaxis sensory transducer  26.56 
 
 
567 aa  141  3.9999999999999997e-32  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1774  methyl-accepting chemotaxis sensory transducer  32.26 
 
 
671 aa  140  4.999999999999999e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_3537  methyl-accepting chemotaxis sensory transducer with GAF sensor  31.74 
 
 
663 aa  140  7e-32  Pelobacter propionicus DSM 2379  Bacteria  normal  0.644926  n/a   
 
 
-
 
NC_009483  Gura_2692  methyl-accepting chemotaxis sensory transducer  27.57 
 
 
768 aa  139  1e-31  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2936  methyl-accepting chemotaxis sensory transducer  28.4 
 
 
702 aa  138  3.0000000000000003e-31  Opitutus terrae PB90-1  Bacteria  normal  0.734876  normal 
 
 
-
 
NC_012918  GM21_1237  methyl-accepting chemotaxis sensory transducer with GAF sensor  31.31 
 
 
700 aa  137  4e-31  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000000495817 
 
 
-
 
NC_010814  Glov_1121  methyl-accepting chemotaxis sensory transducer  27.64 
 
 
557 aa  134  5e-30  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000918445  n/a   
 
 
-
 
NC_013501  Rmar_2782  methyl-accepting chemotaxis sensory transducer  32.2 
 
 
601 aa  130  7.000000000000001e-29  Rhodothermus marinus DSM 4252  Bacteria  normal  0.163256  n/a   
 
 
-
 
NC_010814  Glov_0951  methyl-accepting chemotaxis sensory transducer with GAF sensor  30.51 
 
 
661 aa  128  3e-28  Geobacter lovleyi SZ  Bacteria  normal  0.104547  n/a   
 
 
-
 
NC_009483  Gura_2483  methyl-accepting chemotaxis sensory transducer  26.6 
 
 
675 aa  125  2e-27  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  28.66 
 
 
637 aa  124  3e-27  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  34.84 
 
 
640 aa  124  6e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_007520  Tcr_1999  methyl-accepting chemotaxis sensory transducer  24.19 
 
 
405 aa  123  7e-27  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
634 aa  123  9.999999999999999e-27  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  34.43 
 
 
629 aa  122  1.9999999999999998e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1221  methyl-accepting chemotaxis sensory transducer  28.83 
 
 
564 aa  122  1.9999999999999998e-26  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000139892  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  33.88 
 
 
541 aa  121  3.9999999999999996e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_013411  GYMC61_2101  methyl-accepting chemotaxis sensory transducer  28.85 
 
 
565 aa  120  7e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013502  Rmar_2870  methyl-accepting chemotaxis sensory transducer  40.48 
 
 
636 aa  120  7e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_44300  aerotaxis receptor Aer  34.91 
 
 
521 aa  120  9e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1624  methyl-accepting chemotaxis sensory transducer  40.48 
 
 
626 aa  119  9.999999999999999e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  0.835429  n/a   
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
647 aa  119  9.999999999999999e-26  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1902  methyl-accepting chemotaxis sensory transducer  34.96 
 
 
521 aa  119  1.9999999999999998e-25  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00326538  normal  0.948878 
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  32.97 
 
 
739 aa  119  1.9999999999999998e-25  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  29.25 
 
 
541 aa  118  3e-25  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3770  aerotaxis receptor Aer  34.48 
 
 
521 aa  117  3.9999999999999997e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  28.97 
 
 
638 aa  117  3.9999999999999997e-25  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_002947  PP_5021  methyl-accepting chemotaxis sensory transducer  32.62 
 
 
647 aa  117  6.9999999999999995e-25  Pseudomonas putida KT2440  Bacteria  normal  0.0828859  normal 
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  31.16 
 
 
605 aa  116  7.999999999999999e-25  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_007413  Ava_0061  chemotaxis sensory transducer  28 
 
 
752 aa  116  8.999999999999998e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  0.691552  normal  0.30416 
 
 
-
 
NC_010814  Glov_0461  methyl-accepting chemotaxis sensory transducer  30.07 
 
 
569 aa  116  8.999999999999998e-25  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1561  methyl-accepting chemotaxis sensory transducer  28.8 
 
 
528 aa  116  1.0000000000000001e-24  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  34.43 
 
 
640 aa  115  1.0000000000000001e-24  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_013501  Rmar_2177  methyl-accepting chemotaxis sensory transducer  28.62 
 
 
628 aa  116  1.0000000000000001e-24  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  32.55 
 
 
638 aa  115  2.0000000000000002e-24  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  30.86 
 
 
650 aa  115  2.0000000000000002e-24  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_008789  Hhal_0974  methyl-accepting chemotaxis sensory transducer  30.82 
 
 
532 aa  115  2.0000000000000002e-24  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_3107  methyl-accepting chemotaxis sensory transducer  30.03 
 
 
542 aa  115  3e-24  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  32.35 
 
 
638 aa  115  3e-24  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0956  methyl-accepting chemotaxis sensory transducer  32.97 
 
 
676 aa  114  3e-24  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0798  methyl-accepting chemotaxis sensory transducer  35.6 
 
 
541 aa  115  3e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1374  methyl-accepting chemotaxis sensory transducer  31.54 
 
 
759 aa  115  3e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.43954  n/a   
 
 
-
 
NC_008577  Shewana3_0582  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  30.07 
 
 
524 aa  114  3e-24  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05150  adenylyl cyclase class-3/4/guanylyl cyclase  33.53 
 
 
650 aa  115  3e-24  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  32.35 
 
 
638 aa  114  4.0000000000000004e-24  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_008609  Ppro_0042  methyl-accepting chemotaxis sensory transducer  30.18 
 
 
565 aa  114  4.0000000000000004e-24  Pelobacter propionicus DSM 2379  Bacteria  normal  0.121118  n/a   
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  30.87 
 
 
638 aa  114  5e-24  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0444  methyl-accepting chemotaxis sensory transducer  34.69 
 
 
647 aa  114  6e-24  Pseudomonas putida W619  Bacteria  normal  0.414929  normal 
 
 
-
 
NC_009656  PSPA7_2672  putative chemotaxis transducer  39.89 
 
 
538 aa  114  6e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  0.119833  n/a   
 
 
-
 
NC_009456  VC0395_0250  methyl-accepting chemotaxis protein  36.76 
 
 
518 aa  114  6e-24  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1221  methyl-accepting chemotaxis sensory transducer  29.71 
 
 
544 aa  114  6e-24  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000143655  n/a   
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  29.31 
 
 
543 aa  113  7.000000000000001e-24  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0672  methyl-accepting chemotaxis sensory transducer  31.5 
 
 
733 aa  114  7.000000000000001e-24  Cupriavidus metallidurans CH34  Bacteria  normal  0.371682  normal  0.522662 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  33.86 
 
 
647 aa  113  8.000000000000001e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0400  methyl-accepting chemotaxis protein  33.08 
 
 
549 aa  113  1.0000000000000001e-23  Geobacter sulfurreducens PCA  Bacteria  normal  0.431065  n/a   
 
 
-
 
NC_002939  GSU0582  methyl-accepting chemotaxis protein  39.89 
 
 
696 aa  113  1.0000000000000001e-23  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  31.94 
 
 
663 aa  113  1.0000000000000001e-23  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0749  methyl-accepting chemotaxis sensory transducer  30.42 
 
 
880 aa  113  1.0000000000000001e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2620  methyl-accepting chemotaxis sensory transducer  31.99 
 
 
733 aa  113  1.0000000000000001e-23  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0506  chemotaxis sensory transducer  27.61 
 
 
982 aa  113  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  0.202983  normal 
 
 
-
 
NC_011726  PCC8801_0720  methyl-accepting chemotaxis sensory transducer  30.42 
 
 
880 aa  113  1.0000000000000001e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_0476  methyl-accepting chemotaxis sensory transducer  33.2 
 
 
830 aa  112  1.0000000000000001e-23  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4401  methyl-accepting chemotaxis sensory transducer  30.49 
 
 
695 aa  113  1.0000000000000001e-23  Geobacter uraniireducens Rf4  Bacteria  normal  0.896591  n/a   
 
 
-
 
NC_011830  Dhaf_1610  methyl-accepting chemotaxis sensory transducer  29.17 
 
 
572 aa  112  1.0000000000000001e-23  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0355909  n/a   
 
 
-
 
NC_013216  Dtox_3366  methyl-accepting chemotaxis sensory transducer  30.33 
 
 
519 aa  113  1.0000000000000001e-23  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.418042  normal 
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  30.39 
 
 
425 aa  112  2.0000000000000002e-23  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_009439  Pmen_1210  methyl-accepting chemotaxis sensory transducer  38.16 
 
 
540 aa  112  2.0000000000000002e-23  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.289047 
 
 
-
 
NC_007005  Psyr_1150  chemotaxis sensory transducer  31.68 
 
 
551 aa  112  2.0000000000000002e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  31.87 
 
 
681 aa  112  2.0000000000000002e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_008322  Shewmr7_3447  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  30.21 
 
 
524 aa  112  2.0000000000000002e-23  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_31400  putative chemotaxis transducer  39.34 
 
 
575 aa  112  2.0000000000000002e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.307711  hitchhiker  0.0000000000413464 
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  28.21 
 
 
549 aa  111  3e-23  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3294  methyl-accepting chemotaxis sensory transducer  34.34 
 
 
524 aa  111  3e-23  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1832  methyl-accepting chemotaxis sensory transducer  35.24 
 
 
373 aa  111  3e-23  Geobacter lovleyi SZ  Bacteria  normal  0.230567  n/a   
 
 
-
 
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