More than 300 homologs were found in PanDaTox collection
for query gene Gbem_3362 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011772  BCG9842_B0947  1-deoxy-D-xylulose-5-phosphate synthase  50.72 
 
 
630 aa  640    Bacillus cereus G9842  Bacteria  decreased coverage  0.0000059556  decreased coverage  0.0000085811 
 
 
-
 
NC_002936  DET0745  1-deoxy-D-xylulose-5-phosphate synthase  53.25 
 
 
647 aa  642    Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0686  1-deoxy-D-xylulose-5-phosphate synthase  70.02 
 
 
637 aa  903    Geobacter sulfurreducens PCA  Bacteria  normal  0.351489  n/a   
 
 
-
 
NC_002939  GSU1764  1-deoxy-D-xylulose-5-phosphate synthase  58.59 
 
 
626 aa  750    Geobacter sulfurreducens PCA  Bacteria  normal  0.0479282  n/a   
 
 
-
 
NC_003909  BCE_4249  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
630 aa  644    Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000543695  n/a   
 
 
-
 
NC_013525  Tter_1852  deoxyxylulose-5-phosphate synthase  54.88 
 
 
640 aa  674    Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1540  1-deoxy-D-xylulose-5-phosphate synthase  53.26 
 
 
620 aa  662    Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00810208  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4029  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
630 aa  642    Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000105298  n/a   
 
 
-
 
NC_011658  BCAH187_A4307  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
630 aa  644    Bacillus cereus AH187  Bacteria  unclonable  0.0000000950231  n/a   
 
 
-
 
NC_005945  BAS4081  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
630 aa  644    Bacillus anthracis str. Sterne  Bacteria  normal  0.491332  n/a   
 
 
-
 
NC_005957  BT9727_3919  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
630 aa  644    Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000000000317792  n/a   
 
 
-
 
NC_006274  BCZK3930  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
630 aa  644    Bacillus cereus E33L  Bacteria  normal  0.0146607  n/a   
 
 
-
 
NC_009674  Bcer98_2870  1-deoxy-D-xylulose-5-phosphate synthase  51.21 
 
 
630 aa  645    Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.016121  n/a   
 
 
-
 
NC_007404  Tbd_0879  1-deoxy-D-xylulose-5-phosphate synthase  54.9 
 
 
618 aa  635    Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.623076 
 
 
-
 
NC_013223  Dret_1758  deoxyxylulose-5-phosphate synthase  56.18 
 
 
633 aa  717    Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.805776 
 
 
-
 
NC_013411  GYMC61_0251  1-deoxy-D-xylulose-5-phosphate synthase  53.61 
 
 
631 aa  665    Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_2182  1-deoxy-D-xylulose-5-phosphate synthase  59.16 
 
 
625 aa  755    Geobacter lovleyi SZ  Bacteria  normal  0.0455646  n/a   
 
 
-
 
NC_009943  Dole_1662  deoxyxylulose-5-phosphate synthase  55.86 
 
 
626 aa  717    Desulfococcus oleovorans Hxd3  Bacteria  normal  0.184143  n/a   
 
 
-
 
NC_009483  Gura_2175  1-deoxy-D-xylulose-5-phosphate synthase  61.39 
 
 
620 aa  769    Geobacter uraniireducens Rf4  Bacteria  normal  0.0116264  n/a   
 
 
-
 
NC_007498  Pcar_1667  1-deoxy-D-xylulose-5-phosphate synthase  58.86 
 
 
634 aa  749    Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000640226  n/a   
 
 
-
 
NC_013205  Aaci_2448  deoxyxylulose-5-phosphate synthase  53.66 
 
 
631 aa  665    Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1136  deoxyxylulose-5-phosphate synthase  53.18 
 
 
635 aa  645    Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.00423359 
 
 
-
 
NC_007517  Gmet_1934  1-deoxy-D-xylulose-5-phosphate synthase  59.84 
 
 
625 aa  761    Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2822  1-deoxy-D-xylulose-5-phosphate synthase  75.79 
 
 
635 aa  985    Geobacter metallireducens GS-15  Bacteria  normal  0.553695  normal  0.10664 
 
 
-
 
NC_007519  Dde_2200  1-deoxy-D-xylulose-5-phosphate synthase  56.45 
 
 
661 aa  716    Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4400  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
630 aa  644    Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000595966  n/a   
 
 
-
 
NC_011725  BCB4264_A4287  1-deoxy-D-xylulose-5-phosphate synthase  50.89 
 
 
630 aa  642    Bacillus cereus B4264  Bacteria  unclonable  0.000332787  n/a   
 
 
-
 
NC_012918  GM21_0883  1-deoxy-D-xylulose-5-phosphate synthase  97.48 
 
 
635 aa  1263    Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000207097 
 
 
-
 
NC_007614  Nmul_A0236  1-deoxy-D-xylulose-5-phosphate synthase  52.12 
 
 
614 aa  655    Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.947213  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0652  1-deoxy-D-xylulose-5-phosphate synthase  51.85 
 
 
631 aa  638    Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1511  1-deoxy-D-xylulose-5-phosphate synthase  59.13 
 
 
640 aa  705    Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0832  1-deoxy-D-xylulose-5-phosphate synthase  53.04 
 
 
640 aa  641    Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.111285  n/a   
 
 
-
 
NC_010515  Bcenmc03_3648  1-deoxy-D-xylulose-5-phosphate synthase  51.26 
 
 
634 aa  635    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2319  1-deoxy-D-xylulose-5-phosphate synthase  53.45 
 
 
630 aa  660    Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2133  1-deoxy-D-xylulose-5-phosphate synthase  53.38 
 
 
614 aa  665    Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000520629  normal 
 
 
-
 
NC_007952  Bxe_B2827  1-deoxy-D-xylulose-5-phosphate synthase  52.7 
 
 
635 aa  637    Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_4197  1-deoxy-D-xylulose-5-phosphate synthase  51.05 
 
 
630 aa  644    Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.9666000000000002e-33 
 
 
-
 
NC_011146  Gbem_1258  1-deoxy-D-xylulose-5-phosphate synthase  59.81 
 
 
646 aa  753    Geobacter bemidjiensis Bem  Bacteria  normal  0.260207  n/a   
 
 
-
 
NC_009253  Dred_1078  deoxyxylulose-5-phosphate synthase  58.86 
 
 
635 aa  741    Desulfotomaculum reducens MI-1  Bacteria  normal  0.0303047  n/a   
 
 
-
 
NC_010814  Glov_2235  1-deoxy-D-xylulose-5-phosphate synthase  70.65 
 
 
622 aa  909    Geobacter lovleyi SZ  Bacteria  normal  0.77755  n/a   
 
 
-
 
NC_007973  Rmet_2615  1-deoxy-D-xylulose-5-phosphate synthase  53.27 
 
 
637 aa  635    Cupriavidus metallidurans CH34  Bacteria  normal  0.0207867  normal  0.922526 
 
 
-
 
NC_009012  Cthe_0828  1-deoxy-D-xylulose-5-phosphate synthase  51.87 
 
 
627 aa  637    Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3025  1-deoxy-D-xylulose-5-phosphate synthase  62.44 
 
 
646 aa  761    Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010676  Bphyt_6781  1-deoxy-D-xylulose-5-phosphate synthase  52.46 
 
 
653 aa  638    Burkholderia phytofirmans PsJN  Bacteria  normal  0.772471  hitchhiker  0.0000939262 
 
 
-
 
NC_008061  Bcen_4486  1-deoxy-D-xylulose-5-phosphate synthase  51.26 
 
 
646 aa  636    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3948  1-deoxy-D-xylulose-5-phosphate synthase  51.79 
 
 
632 aa  644    Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1027  deoxyxylulose-5-phosphate synthase  58.6 
 
 
634 aa  738    Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0943  deoxyxylulose-5-phosphate synthase  57.42 
 
 
635 aa  734    Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2584  deoxyxylulose-5-phosphate synthase  56.08 
 
 
633 aa  697    Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.931562  normal  0.224926 
 
 
-
 
NC_011830  Dhaf_3488  deoxyxylulose-5-phosphate synthase  55.84 
 
 
631 aa  700    Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0451312  n/a   
 
 
-
 
NC_009483  Gura_1018  1-deoxy-D-xylulose-5-phosphate synthase  76.08 
 
 
637 aa  972    Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1398  deoxyxylulose-5-phosphate synthase  59.84 
 
 
629 aa  717    Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3362  1-deoxy-D-xylulose-5-phosphate synthase  100 
 
 
635 aa  1289    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0582  deoxyxylulose-5-phosphate synthase  53.41 
 
 
638 aa  676    Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0956  1-deoxy-D-xylulose-5-phosphate synthase  53.55 
 
 
644 aa  642    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.246357  n/a   
 
 
-
 
NC_011769  DvMF_0126  1-deoxy-D-xylulose-5-phosphate synthase  55.02 
 
 
646 aa  686    Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.410155 
 
 
-
 
NC_008543  Bcen2424_3879  1-deoxy-D-xylulose-5-phosphate synthase  51.26 
 
 
646 aa  636    Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.155835 
 
 
-
 
NC_008554  Sfum_1418  deoxyxylulose-5-phosphate synthase  59.58 
 
 
646 aa  768    Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.793105  normal  0.333041 
 
 
-
 
NC_008576  Mmc1_1048  1-deoxy-D-xylulose-5-phosphate synthase  54.94 
 
 
622 aa  666    Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1191  1-deoxy-D-xylulose-5-phosphate synthase  70.33 
 
 
624 aa  889    Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2403  1-deoxy-D-xylulose-5-phosphate synthase  60.13 
 
 
626 aa  759    Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0675  1-deoxy-D-xylulose-5-phosphate synthase  53.25 
 
 
633 aa  650    Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1694  1-Deoxy-D-xylulose-5-phosphate synthase  53.59 
 
 
631 aa  681    Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.134316  normal  0.0277937 
 
 
-
 
NC_008751  Dvul_1718  1-deoxy-D-xylulose-5-phosphate synthase  55.36 
 
 
641 aa  695    Desulfovibrio vulgaris DP4  Bacteria  normal  0.0789997  normal  0.8348 
 
 
-
 
NC_011899  Hore_06530  deoxyxylulose-5-phosphate synthase  56.96 
 
 
636 aa  739    Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000553997  n/a   
 
 
-
 
NC_011661  Dtur_1044  deoxyxylulose-5-phosphate synthase  53.04 
 
 
618 aa  651    Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.213907  n/a   
 
 
-
 
NC_007760  Adeh_1097  1-deoxy-D-xylulose-5-phosphate synthase  52.67 
 
 
636 aa  632  1e-180  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.124796  n/a   
 
 
-
 
NC_010552  BamMC406_3776  1-deoxy-D-xylulose-5-phosphate synthase  50.7 
 
 
634 aa  633  1e-180  Burkholderia ambifaria MC40-6  Bacteria  normal  0.495759  normal  0.0534173 
 
 
-
 
NC_008391  Bamb_3250  1-deoxy-D-xylulose-5-phosphate synthase  50.86 
 
 
646 aa  634  1e-180  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0235548 
 
 
-
 
NC_008835  BMA10229_1706  1-deoxy-D-xylulose-5-phosphate synthase  52.05 
 
 
651 aa  629  1e-179  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2631  1-deoxy-D-xylulose-5-phosphate synthase  52.26 
 
 
631 aa  629  1e-179  Methylibium petroleiphilum PM1  Bacteria  normal  0.898306  normal 
 
 
-
 
NC_006349  BMAA0330  1-deoxy-D-xylulose-5-phosphate synthase  52.05 
 
 
634 aa  629  1e-179  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1512  1-deoxy-D-xylulose-5-phosphate synthase  52.05 
 
 
651 aa  629  1e-179  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2426  1-deoxy-D-xylulose-5-phosphate synthase  50.7 
 
 
636 aa  629  1e-179  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0842  1-deoxy-D-xylulose-5-phosphate synthase  52.05 
 
 
634 aa  629  1e-179  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2211  1-deoxy-D-xylulose-5-phosphate synthase  50.87 
 
 
634 aa  631  1e-179  Burkholderia sp. 383  Bacteria  normal  0.41875  normal 
 
 
-
 
NC_009079  BMA10247_A0364  1-deoxy-D-xylulose-5-phosphate synthase  52.05 
 
 
651 aa  629  1e-179  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0614  1-deoxy-D-xylulose-5-phosphate synthase  52.13 
 
 
634 aa  629  1e-179  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_1974  1-deoxy-D-xylulose-5-phosphate synthase  52.4 
 
 
624 aa  628  1e-179  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2392  1-deoxy-D-xylulose-5-phosphate synthase  52.05 
 
 
634 aa  629  1e-179  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2534  1-deoxy-D-xylulose-5-phosphate synthase  51.89 
 
 
634 aa  629  1e-179  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_652  1-deoxy-D-xylulose-5-phosphate synthase  51.46 
 
 
647 aa  630  1e-179  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4820  1-deoxy-D-xylulose-5-phosphate synthase  50.86 
 
 
646 aa  629  1e-179  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011206  Lferr_1642  deoxyxylulose-5-phosphate synthase  52.4 
 
 
624 aa  628  1e-179  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.0000759377 
 
 
-
 
NC_012856  Rpic12D_2033  1-deoxy-D-xylulose-5-phosphate synthase  50.7 
 
 
636 aa  628  1e-178  Ralstonia pickettii 12D  Bacteria  normal  0.720268  normal 
 
 
-
 
NC_007347  Reut_A0882  1-deoxy-D-xylulose-5-phosphate synthase  51.92 
 
 
638 aa  625  1e-178  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2875  1-deoxy-D-xylulose-5-phosphate synthase  51.7 
 
 
632 aa  628  1e-178  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2511  deoxyxylulose-5-phosphate synthase  50.73 
 
 
625 aa  625  1e-178  Clostridium phytofermentans ISDg  Bacteria  normal  0.465086  n/a   
 
 
-
 
NC_011145  AnaeK_1157  deoxyxylulose-5-phosphate synthase  52.62 
 
 
636 aa  626  1e-178  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2438  1-deoxy-D-xylulose-5-phosphate synthase  51.22 
 
 
643 aa  627  1e-178  Marinobacter aquaeolei VT8  Bacteria  normal  0.688474  n/a   
 
 
-
 
NC_007298  Daro_3061  1-deoxy-D-xylulose-5-phosphate synthase  51.3 
 
 
618 aa  623  1e-177  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.004887  hitchhiker  0.00000111191 
 
 
-
 
NC_009719  Plav_0781  1-deoxy-D-xylulose-5-phosphate synthase  52.31 
 
 
650 aa  622  1e-177  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.128474  normal  0.356919 
 
 
-
 
NC_011891  A2cp1_1225  deoxyxylulose-5-phosphate synthase  52.62 
 
 
636 aa  624  1e-177  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1747  1-deoxy-D-xylulose-5-phosphate synthase  51.85 
 
 
635 aa  622  1e-177  Polaromonas sp. JS666  Bacteria  normal  normal  0.123274 
 
 
-
 
NC_011898  Ccel_1900  deoxyxylulose-5-phosphate synthase  50.74 
 
 
623 aa  622  1e-177  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00488607  n/a   
 
 
-
 
NC_012034  Athe_1288  deoxyxylulose-5-phosphate synthase  51.48 
 
 
616 aa  621  1e-176  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0593022  n/a   
 
 
-
 
NC_003295  RSc2221  1-deoxy-D-xylulose-5-phosphate synthase  51 
 
 
636 aa  620  1e-176  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0956  1-deoxy-D-xylulose-5-phosphate synthase  51.3 
 
 
629 aa  619  1e-176  Acidovorax ebreus TPSY  Bacteria  normal  0.922207  n/a   
 
 
-
 
NC_009485  BBta_2479  1-deoxy-D-xylulose-5-phosphate synthase  51.54 
 
 
641 aa  619  1e-176  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_07870  1-deoxy-D-xylulose-5-phosphate synthase  50.88 
 
 
633 aa  619  1e-176  Azotobacter vinelandii DJ  Bacteria  normal  0.587  n/a   
 
 
-
 
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