56 homologs were found in PanDaTox collection
for query gene Gbem_3334 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_3334  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  100 
 
 
221 aa  442  1e-123  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000562871  n/a   
 
 
-
 
NC_012918  GM21_0912  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  96.83 
 
 
221 aa  433  1e-121  Geobacter sp. M21  Bacteria  n/a    hitchhiker  8.63584e-33 
 
 
-
 
NC_002939  GSU1176  fumarate reductase, cytochrome b subunit, putative  59.55 
 
 
220 aa  283  2.0000000000000002e-75  Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.000804206  n/a   
 
 
-
 
NC_007517  Gmet_2397  succinate dehydrogenase subunit C  60 
 
 
220 aa  283  2.0000000000000002e-75  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.000000000000157614  normal 
 
 
-
 
NC_009483  Gura_3257  succinate dehydrogenase/fumarate reductase cytochrome b subunit  56.36 
 
 
219 aa  253  1.0000000000000001e-66  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000103645  n/a   
 
 
-
 
NC_007760  Adeh_2934  succinate dehydrogenase subunit C  51.38 
 
 
221 aa  239  2.9999999999999997e-62  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2483  succinate dehydrogenase/fumarate reductase cytochrome b subunit  51.13 
 
 
221 aa  233  2.0000000000000002e-60  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00000000324383  n/a   
 
 
-
 
NC_011891  A2cp1_3127  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  50 
 
 
221 aa  229  3e-59  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3020  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  50 
 
 
221 aa  229  3e-59  Anaeromyxobacter sp. K  Bacteria  normal  0.197929  n/a   
 
 
-
 
NC_010814  Glov_2214  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  50.23 
 
 
222 aa  228  5e-59  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.00000205713  n/a   
 
 
-
 
NC_007498  Pcar_0446  succinate dehydrogenase/fumarate reductase, cytochrome b subunit  44.75 
 
 
223 aa  186  3e-46  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000043641  n/a   
 
 
-
 
NC_010571  Oter_0671  succinate dehydrogenase/fumarate reductase cytochrome b subunit  37.45 
 
 
253 aa  154  8e-37  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010655  Amuc_0986  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  38.12 
 
 
233 aa  151  8e-36  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.190764  normal  0.959903 
 
 
-
 
NC_013440  Hoch_5881  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  38.74 
 
 
228 aa  142  3e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0369538  normal 
 
 
-
 
NC_009972  Haur_1734  succinate dehydrogenase/fumarate reductase cytochrome b subunit  38.14 
 
 
223 aa  140  1.9999999999999998e-32  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.776584  n/a   
 
 
-
 
NC_007760  Adeh_2636  succinate dehydrogenase subunit C  33.64 
 
 
232 aa  135  3.0000000000000003e-31  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.189962  n/a   
 
 
-
 
NC_011145  AnaeK_2722  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  33.94 
 
 
221 aa  135  4e-31  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2817  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  34.4 
 
 
221 aa  135  5e-31  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.893711  n/a   
 
 
-
 
NC_009675  Anae109_2602  succinate dehydrogenase/fumarate reductase cytochrome b subunit  36.7 
 
 
230 aa  130  1.0000000000000001e-29  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3465  succinate dehydrogenase subunit C  33.19 
 
 
246 aa  125  6e-28  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3551  succinate dehydrogenase subunit C  34.8 
 
 
233 aa  121  8e-27  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1555  succinate dehydrogenase/fumarate reductase cytochrome b subunit  33.49 
 
 
212 aa  119  3.9999999999999996e-26  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1054  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  33.04 
 
 
231 aa  117  9e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3079  succinate dehydrogenase/fumarate reductase cytochrome b subunit  33.48 
 
 
226 aa  117  9.999999999999999e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0384  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  30.63 
 
 
234 aa  113  3e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.556008  normal  0.820054 
 
 
-
 
NC_013510  Tcur_1123  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  28.32 
 
 
232 aa  110  2.0000000000000002e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2400  succinate dehydrogenase/fumarate reductase cytochrome b subunit  33.48 
 
 
226 aa  106  3e-22  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1710  succinate dehydrogenase/fumarate reductase cytochrome b subunit  31.17 
 
 
227 aa  105  5e-22  Salinispora tropica CNB-440  Bacteria  normal  0.0407721  normal  0.47892 
 
 
-
 
NC_009921  Franean1_1278  succinate dehydrogenase/fumarate reductase cytochrome b subunit  32.31 
 
 
234 aa  104  9e-22  Frankia sp. EAN1pec  Bacteria  normal  normal  0.563199 
 
 
-
 
NC_011831  Cagg_1576  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  32.77 
 
 
239 aa  104  1e-21  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.790909  normal 
 
 
-
 
NC_013739  Cwoe_5262  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  28.76 
 
 
256 aa  102  5e-21  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.277764 
 
 
-
 
NC_013169  Ksed_23340  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family  31.63 
 
 
231 aa  100  2e-20  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1707  succinate dehydrogenase/fumarate reductase cytochrome b subunit  30.97 
 
 
230 aa  96.7  2e-19  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00155149 
 
 
-
 
NC_013061  Phep_0210  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  33.49 
 
 
209 aa  97.1  2e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.178557 
 
 
-
 
NC_010803  Clim_2443  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  27.83 
 
 
231 aa  93.2  3e-18  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8458  succinate dehydrogenase, cytochrome b subunit  28.81 
 
 
253 aa  93.2  3e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  0.70376  normal 
 
 
-
 
NC_008255  CHU_2472  succinate dehydrogenase subunit C  30.22 
 
 
234 aa  91.7  8e-18  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.088296 
 
 
-
 
NC_007333  Tfu_2453  succinate dehydrogenase subunit C  33.33 
 
 
238 aa  89.7  3e-17  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5011  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  29.03 
 
 
231 aa  89  5e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2853  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  28.37 
 
 
220 aa  89  6e-17  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3923  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  33.18 
 
 
235 aa  88.2  9e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3969  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  30.77 
 
 
223 aa  87.4  1e-16  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.539858  normal  0.938313 
 
 
-
 
NC_008639  Cpha266_0102  succinate dehydrogenase subunit C  25.23 
 
 
242 aa  85.9  5e-16  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_1918  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  29.49 
 
 
248 aa  84.3  0.000000000000001  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.48387  normal 
 
 
-
 
NC_007512  Plut_2082  succinate dehydrogenase, cytochrome b558 subunit  27.27 
 
 
217 aa  81.6  0.000000000000007  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG1616  hypothetical protein  30.28 
 
 
230 aa  81.3  0.00000000000001  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_014148  Plim_2451  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  31.41 
 
 
263 aa  80.5  0.00000000000002  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.260267  n/a   
 
 
-
 
NC_013162  Coch_0242  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  26.67 
 
 
224 aa  79.7  0.00000000000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.463951  n/a   
 
 
-
 
NC_013132  Cpin_6536  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  29.85 
 
 
229 aa  72  0.000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0147302  normal  0.421545 
 
 
-
 
NC_009441  Fjoh_0677  succinate dehydrogenase/fumarate reductase cytochrome b subunit  29.69 
 
 
221 aa  68.2  0.00000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  0.330554  n/a   
 
 
-
 
NC_013947  Snas_5226  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  25.33 
 
 
232 aa  67.8  0.0000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.659041  normal 
 
 
-
 
NC_014230  CA2559_04700  Succinate dehydrogenase, cytochrome b558 subunit  24.77 
 
 
239 aa  67.8  0.0000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.142799  n/a   
 
 
-
 
NC_007514  Cag_1935  succinate dehydrogenase, cytochrome b558 subunit  24.16 
 
 
221 aa  64.3  0.000000001  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_3265  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  25.35 
 
 
224 aa  60.1  0.00000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0102296  normal  0.074852 
 
 
-
 
NC_007516  Syncc9605_2086  succinate dehydrogenase subunit C  25.13 
 
 
208 aa  54.3  0.000001  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0314  succinate dehydrogenase subunit C  25.82 
 
 
209 aa  53.9  0.000002  Synechococcus elongatus PCC 7942  Bacteria  normal  0.884437  normal 
 
 
-
 
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