28 homologs were found in PanDaTox collection
for query gene Gbem_3237 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011146  Gbem_3237  pyridoxamine 5'-phosphate oxidase-related FMN-binding  100 
 
 		 144 aa  296  5e-80  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.000891571  n/a   
 
 
-
 
NC_012918  GM21_1028  pyridoxamine 5'-phosphate oxidase-related FMN-binding  97.22 
 
 		 144 aa  290  4e-78  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_009012  Cthe_2635  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  52.74 
 
 		 144 aa  147  5e-35  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_0275  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  48.59 
 
 		 141 aa  140  5e-33  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007355  Mbar_A3327  hypothetical protein  41.43 
 
 		 142 aa  115  1.9999999999999998e-25  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.765972  normal  0.0160803 
 
 
-
 
NC_009051  Memar_0895  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  38.3 
 
 		 142 aa  103  9e-22  Methanoculleus marisnigri JR1  Archaea  normal  0.155844  n/a   
 
 
-
 
NC_011830  Dhaf_2119  pyridoxamine 5'-phosphate oxidase-related FMN-binding  28.93 
 
 		 131 aa  58.9  0.00000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000101081  n/a   
 
 
-
 
NC_011832  Mpal_0228  pyridoxamine 5'-phosphate oxidase-related FMN-binding  24.59 
 
 		 151 aa  55.8  0.0000002  Methanosphaerula palustris E1-9c  Archaea  normal  1  normal  1 
 
 
-
 
NC_009253  Dred_0307  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  26.23 
 
 		 133 aa  55.1  0.0000003  Desulfotomaculum reducens MI-1  Bacteria  decreased coverage  0.0000521553  n/a   
 
 
-
 
NC_009012  Cthe_1495  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  32 
 
 		 130 aa  54.7  0.0000005  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.741816  n/a   
 
 
-
 
NC_013204  Elen_0996  pyridoxamine 5'-phosphate oxidase-related FMN- binding  39.66 
 
 		 137 aa  54.3  0.0000006  Eggerthella lenta DSM 2243  Bacteria  normal  1  normal  0.676275 
 
 
-
 
NC_013517  Sterm_0492  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  28.57 
 
 		 132 aa  53.1  0.000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
NC_013522  Taci_0367  pyridoxamine 5'-phosphate oxidase-related FMN- binding protein  26.87 
 
 		 136 aa  52.4  0.000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.008836  n/a   
 
 
-
 
NC_007517  Gmet_2130  pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein  26.72 
 
 		 132 aa  47  0.00008  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013165  Shel_24170  hypothetical protein  25 
 
 		 136 aa  47  0.00008  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011206  Lferr_0778  pyridoxamine 5'-phosphate oxidase  37.04 
 
 		 218 aa  46.6  0.0001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011761  AFE_0628  pyridoxamine 5'-phosphate oxidase  37.04 
 
 		 218 aa  46.6  0.0001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_0358  pyridoxamine 5'-phosphate oxidase-related FMN-binding  25.2 
 
 		 134 aa  46.2  0.0002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000170822 
 
 
-
 
NC_011145  AnaeK_2407  pyridoxamine 5'-phosphate oxidase  38.46 
 
 		 198 aa  43.9  0.0007  Anaeromyxobacter sp. K  Bacteria  normal  0.576052  n/a   
 
 
-
 
NC_008463  PA14_50800  pyridoxamine 5'-phosphate oxidase  41.79 
 
 		 215 aa  43.9  0.0007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  hitchhiker  0.00587779 
 
 
-
 
NC_007760  Adeh_1455  pyridoxamine 5'-phosphate oxidase  38.46 
 
 		 198 aa  43.9  0.0007  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.789221  n/a   
 
 
-
 
NC_011891  A2cp1_2494  pyridoxamine 5'-phosphate oxidase  38.46 
 
 		 210 aa  43.9  0.0008  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_1150  pyridoxamine 5'-phosphate oxidase  43.28 
 
 		 215 aa  43.5  0.001  Pseudomonas putida W619  Bacteria  normal  0.343525  normal  0.105039 
 
 
-
 
NC_009656  PSPA7_4331  pyridoxamine 5'-phosphate oxidase  40.3 
 
 		 215 aa  43.1  0.001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.262405  n/a   
 
 
-
 
NC_011092  SeSA_B0050  NimC/NimA family protein  34.43 
 
 		 130 aa  41.6  0.003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  hitchhiker  0.00285599  normal  0.32703 
 
 
-
 
NC_008789  Hhal_1782  pyridoxamine-phosphate oxidase  32.93 
 
 		 201 aa  41.6  0.003  Halorhodospira halophila SL1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009436  Ent638_1810  pyridoxamine 5'-phosphate oxidase  36.26 
 
 		 218 aa  40.4  0.008  Enterobacter sp. 638  Bacteria  hitchhiker  0.00431301  hitchhiker  0.00113301 
 
 
-
 
NC_010322  PputGB1_4286  pyridoxamine 5'-phosphate oxidase  38.36 
 
 		 215 aa  40  0.01  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>