More than 300 homologs were found in PanDaTox collection
for query gene Gbem_2803 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_2803  response regulator receiver modulated PilZ sensor protein  100 
 
 
237 aa  482  1e-135  Geobacter bemidjiensis Bem  Bacteria  normal  0.0586673  n/a   
 
 
-
 
NC_012918  GM21_1407  response regulator receiver modulated PilZ sensor protein  94.94 
 
 
237 aa  462  1e-129  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000138709 
 
 
-
 
NC_009483  Gura_0926  response regulator receiver modulated PilZ sensor protein  56.33 
 
 
233 aa  258  5.0000000000000005e-68  Geobacter uraniireducens Rf4  Bacteria  normal  0.76006  n/a   
 
 
-
 
NC_002939  GSU0877  response regulator  48.5 
 
 
248 aa  226  3e-58  Geobacter sulfurreducens PCA  Bacteria  normal  0.200847  n/a   
 
 
-
 
NC_009483  Gura_3986  response regulator receiver modulated PilZ sensor protein  48.47 
 
 
236 aa  225  5.0000000000000005e-58  Geobacter uraniireducens Rf4  Bacteria  normal  0.694656  n/a   
 
 
-
 
NC_007517  Gmet_3220  response regulator receiver domain-containing protein  42.86 
 
 
233 aa  191  7e-48  Geobacter metallireducens GS-15  Bacteria  normal  0.975965  hitchhiker  0.00188513 
 
 
-
 
NC_011146  Gbem_0710  response regulator receiver modulated PilZ sensor protein  40.85 
 
 
240 aa  179  4e-44  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0722  response regulator receiver modulated PilZ sensor protein  40.43 
 
 
240 aa  174  8e-43  Geobacter sp. M21  Bacteria  n/a    hitchhiker  4.84817e-16 
 
 
-
 
NC_011146  Gbem_0075  response regulator receiver modulated PilZ sensor protein  36.09 
 
 
227 aa  169  2e-41  Geobacter bemidjiensis Bem  Bacteria  normal  0.124346  n/a   
 
 
-
 
NC_002939  GSU3263  response regulator  38.16 
 
 
231 aa  168  7e-41  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0058  response regulator receiver modulated PilZ sensor protein  35.47 
 
 
226 aa  164  1.0000000000000001e-39  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000000220235 
 
 
-
 
NC_007498  Pcar_1964  response regulator CheY  28.07 
 
 
244 aa  103  2e-21  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0118313  n/a   
 
 
-
 
NC_007498  Pcar_0040  response regulator  29.65 
 
 
239 aa  100  2e-20  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000155004  n/a   
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  29.44 
 
 
454 aa  86.7  3e-16  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
NC_002978  WD0221  response regulator PleD  39.82 
 
 
460 aa  85.5  7e-16  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0640  response regulator receiver protein  38.46 
 
 
123 aa  85.5  7e-16  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0631  response regulator receiver protein  38.46 
 
 
123 aa  85.1  8e-16  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4431  response regulator receiver domain-containing protein  34.96 
 
 
125 aa  84.7  0.000000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2818  periplasmic sensor hybrid histidine kinase  29.82 
 
 
720 aa  84.7  0.000000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.215558  n/a   
 
 
-
 
NC_013526  Tter_2709  response regulator receiver protein  41.18 
 
 
129 aa  84.7  0.000000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000000626377  n/a   
 
 
-
 
NC_008261  CPF_2180  DNA-binding response regulator  34.84 
 
 
223 aa  84  0.000000000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0299585  n/a   
 
 
-
 
NC_007760  Adeh_0606  response regulator receiver domain-containing protein  37.61 
 
 
123 aa  83.2  0.000000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6547  multi-sensor hybrid histidine kinase  41.35 
 
 
865 aa  82.8  0.000000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.325935 
 
 
-
 
NC_009523  RoseRS_3737  two component transcriptional regulator  35.83 
 
 
231 aa  82.4  0.000000000000005  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00273603 
 
 
-
 
NC_008262  CPR_1891  DNA-binding response regulator  34.19 
 
 
223 aa  82.8  0.000000000000005  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3274  two component transcriptional regulator  37.74 
 
 
238 aa  82  0.000000000000008  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
310 aa  81.6  0.000000000000009  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_009719  Plav_2814  response regulator receiver protein  34.17 
 
 
124 aa  81.6  0.00000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212392  normal  0.180632 
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  32.5 
 
 
236 aa  80.5  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_011884  Cyan7425_1062  response regulator receiver protein  37.29 
 
 
120 aa  80.9  0.00000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.58489  hitchhiker  0.0000344775 
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  36.75 
 
 
403 aa  79.7  0.00000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_009712  Mboo_1464  multi-sensor signal transduction histidine kinase  35.29 
 
 
579 aa  80.1  0.00000000000003  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.164507  normal 
 
 
-
 
NC_010501  PputW619_0473  response regulator receiver protein  34.17 
 
 
121 aa  80.1  0.00000000000003  Pseudomonas putida W619  Bacteria  normal  0.950452  normal 
 
 
-
 
NC_008254  Meso_1347  response regulator receiver protein  31.67 
 
 
123 aa  79.7  0.00000000000003  Chelativorans sp. BNC1  Bacteria  normal  0.57835  n/a   
 
 
-
 
NC_009767  Rcas_1504  two component transcriptional regulator  34.17 
 
 
231 aa  79.7  0.00000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.263867  normal  0.57819 
 
 
-
 
NC_007498  Pcar_2629  two component signal transduction response regulator  36.72 
 
 
238 aa  79.3  0.00000000000005  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4663  two component transcriptional regulator  40.38 
 
 
232 aa  79.3  0.00000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4419  two component transcriptional regulator  36.79 
 
 
239 aa  79  0.00000000000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4720  DNA-binding response regulator PhoP  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4484  DNA-binding response regulator PhoP  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4319  alkaline phosphatase synthesis response regulator  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4330  alkaline phosphatase synthesis response regulator  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4714  DNA-binding response regulator PhoP  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4833  DNA-binding response regulator PhoP  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0982965  n/a   
 
 
-
 
NC_011773  BCAH820_4704  DNA-binding response regulator PhoP  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000673192 
 
 
-
 
NC_011772  BCG9842_B0539  DNA-binding response regulator PhoP  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000130788 
 
 
-
 
NC_011725  BCB4264_A4699  DNA-binding response regulator PhoP  36.79 
 
 
239 aa  78.6  0.00000000000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0342  multi-sensor hybrid histidine kinase  36.43 
 
 
827 aa  78.6  0.00000000000009  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_0650  response regulator receiver protein  36.75 
 
 
123 aa  78.6  0.00000000000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.438565  normal 
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  31.3 
 
 
232 aa  77.8  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1749  two component response regulator  30.83 
 
 
123 aa  77.8  0.0000000000001  Agrobacterium vitis S4  Bacteria  normal  0.417168  n/a   
 
 
-
 
NC_013730  Slin_1031  GAF sensor hybrid histidine kinase  36.13 
 
 
1131 aa  77.8  0.0000000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.768055  normal 
 
 
-
 
NC_007604  Synpcc7942_1221  response regulator receiver domain-containing protein  36.79 
 
 
125 aa  78.2  0.0000000000001  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_0237  response regulator receiver protein  35.9 
 
 
119 aa  77.8  0.0000000000001  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.390769  normal  0.929667 
 
 
-
 
NC_010338  Caul_1496  response regulator receiver protein  32.5 
 
 
127 aa  77.8  0.0000000000001  Caulobacter sp. K31  Bacteria  normal  normal  0.270703 
 
 
-
 
NC_011369  Rleg2_1289  response regulator receiver protein  30.83 
 
 
123 aa  78.2  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0254052  hitchhiker  0.00394342 
 
 
-
 
NC_012850  Rleg_1381  response regulator receiver protein  30.83 
 
 
123 aa  78.2  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.427616 
 
 
-
 
NC_011729  PCC7424_3968  response regulator receiver protein  37.07 
 
 
125 aa  77.8  0.0000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011832  Mpal_1331  multi-sensor signal transduction histidine kinase  37.61 
 
 
576 aa  77.8  0.0000000000001  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_009767  Rcas_0353  two component transcriptional regulator  37.14 
 
 
230 aa  77.8  0.0000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.683455 
 
 
-
 
NC_009636  Smed_0925  response regulator receiver protein  30 
 
 
123 aa  77  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  35.33 
 
 
349 aa  77.4  0.0000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1739  response regulator receiver protein  38.84 
 
 
126 aa  77.4  0.0000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4954  multi-sensor hybrid histidine kinase  41.49 
 
 
1016 aa  77.4  0.0000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0561599 
 
 
-
 
NC_009338  Mflv_0035  two component transcriptional regulator  39.62 
 
 
236 aa  77  0.0000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.475833  normal  0.306601 
 
 
-
 
NC_012793  GWCH70_2675  two component transcriptional regulator, winged helix family  31.21 
 
 
234 aa  77.4  0.0000000000002  Geobacillus sp. WCH70  Bacteria  normal  0.661044  n/a   
 
 
-
 
NC_007413  Ava_0508  response regulator receiver domain-containing protein  34.75 
 
 
121 aa  77.4  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.481314  normal 
 
 
-
 
NC_007413  Ava_2324  two component LuxR family transcriptional regulator  37.7 
 
 
245 aa  77  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.42123  normal 
 
 
-
 
NC_014248  Aazo_0819  LuxR family two component transcriptional regulator  38.02 
 
 
227 aa  77  0.0000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.633548  n/a   
 
 
-
 
NC_009972  Haur_0206  response regulator receiver protein  37.93 
 
 
123 aa  77  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.164513  n/a   
 
 
-
 
NC_007575  Suden_1556  response regulator receiver domain-containing protein  36.44 
 
 
125 aa  77  0.0000000000002  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.848966  n/a   
 
 
-
 
NC_009675  Anae109_0469  CheA signal transduction histidine kinase  40.68 
 
 
830 aa  77.4  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.153889  normal  0.631146 
 
 
-
 
NC_007643  Rru_A3206  response regulator receiver protein  31.97 
 
 
126 aa  77  0.0000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.901142  n/a   
 
 
-
 
NC_011726  PCC8801_1714  response regulator receiver protein  38.84 
 
 
126 aa  77.4  0.0000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010581  Bind_1213  response regulator receiver modulated diguanylate cyclase  35.29 
 
 
457 aa  77.4  0.0000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2795  response regulator receiver protein  36.13 
 
 
121 aa  77.4  0.0000000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008576  Mmc1_0425  multi-sensor hybrid histidine kinase  35.2 
 
 
893 aa  77  0.0000000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0173  response regulator receiver protein  36.97 
 
 
119 aa  76.6  0.0000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_3020  response regulator receiver protein  38.68 
 
 
121 aa  77  0.0000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.447611  normal 
 
 
-
 
NC_008752  Aave_2238  response regulator receiver protein  39.66 
 
 
140 aa  76.6  0.0000000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0218186  hitchhiker  0.00000354209 
 
 
-
 
NC_013162  Coch_1562  histidine kinase  35.34 
 
 
1296 aa  76.6  0.0000000000003  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.655639  n/a   
 
 
-
 
NC_009523  RoseRS_3485  two component transcriptional regulator  30.86 
 
 
236 aa  76.6  0.0000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_0424  response regulator receiver modulated diguanylate cyclase  36.97 
 
 
469 aa  76.3  0.0000000000004  Methylocella silvestris BL2  Bacteria  n/a    normal  0.97349 
 
 
-
 
NC_008782  Ajs_3577  response regulator receiver protein  38.68 
 
 
121 aa  76.3  0.0000000000004  Acidovorax sp. JS42  Bacteria  normal  0.400966  normal  0.141746 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  33.62 
 
 
229 aa  76.3  0.0000000000004  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_011992  Dtpsy_2900  response regulator receiver protein  38.68 
 
 
121 aa  76.3  0.0000000000004  Acidovorax ebreus TPSY  Bacteria  normal  0.197839  n/a   
 
 
-
 
NC_002936  DET1058  DNA-binding response regulator  31.03 
 
 
227 aa  75.9  0.0000000000005  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  0.000187393  n/a   
 
 
-
 
NC_007348  Reut_B4069  PAS/PAC sensor hybrid histidine kinase  35.59 
 
 
1284 aa  75.9  0.0000000000005  Ralstonia eutropha JMP134  Bacteria  normal  0.92301  n/a   
 
 
-
 
NC_009767  Rcas_0960  two component transcriptional regulator  30.29 
 
 
236 aa  75.9  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0214647 
 
 
-
 
NC_009972  Haur_2358  two component transcriptional regulator  31.93 
 
 
231 aa  75.9  0.0000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0136772  n/a   
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  33.02 
 
 
230 aa  75.9  0.0000000000005  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_014248  Aazo_4952  response regulator receiver protein  34.75 
 
 
121 aa  75.9  0.0000000000005  'Nostoc azollae' 0708  Bacteria  normal  0.699568  n/a   
 
 
-
 
NC_008576  Mmc1_0647  PAS/PAC sensor hybrid histidine kinase  35 
 
 
1064 aa  75.9  0.0000000000005  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2051  two component transcriptional regulator, winged helix family  32.03 
 
 
247 aa  75.9  0.0000000000006  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.520505  normal 
 
 
-
 
NC_009523  RoseRS_0702  response regulator receiver modulated metal dependent phosphohydrolase  35.19 
 
 
331 aa  75.9  0.0000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.140022  normal 
 
 
-
 
NC_010581  Bind_1212  response regulator receiver protein  32.5 
 
 
123 aa  75.1  0.0000000000008  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  34.17 
 
 
231 aa  75.1  0.0000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  29.11 
 
 
227 aa  75.1  0.0000000000009  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_007355  Mbar_A3109  response regulator receiver  31.41 
 
 
285 aa  75.1  0.0000000000009  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0893452  normal  0.677049 
 
 
-
 
NC_008312  Tery_3248  response regulator receiver protein  34.75 
 
 
121 aa  75.1  0.0000000000009  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.500247 
 
 
-
 
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