More than 300 homologs were found in PanDaTox collection
for query gene Gbem_1898 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  84.49 
 
 
374 aa  676    Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  85.52 
 
 
373 aa  684    Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  86.1 
 
 
374 aa  690    Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  98.66 
 
 
374 aa  773    Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  100 
 
 
374 aa  779    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  82.57 
 
 
373 aa  657    Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  81.77 
 
 
373 aa  650    Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  67.56 
 
 
376 aa  529  1e-149  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  56.76 
 
 
383 aa  438  9.999999999999999e-123  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  57.48 
 
 
380 aa  436  1e-121  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  54.59 
 
 
377 aa  434  1e-121  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  58.45 
 
 
374 aa  431  1e-120  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  55.38 
 
 
386 aa  418  1e-116  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  55.61 
 
 
373 aa  419  1e-116  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  54.69 
 
 
386 aa  416  9.999999999999999e-116  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  53.85 
 
 
381 aa  416  9.999999999999999e-116  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  53.85 
 
 
369 aa  413  1e-114  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  54.3 
 
 
373 aa  412  1e-114  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  54.57 
 
 
373 aa  414  1e-114  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  56.33 
 
 
391 aa  413  1e-114  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  53.32 
 
 
369 aa  414  1e-114  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  54.57 
 
 
373 aa  414  1e-114  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  54.81 
 
 
382 aa  409  1e-113  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  54.55 
 
 
378 aa  408  1e-113  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  54.31 
 
 
397 aa  410  1e-113  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  54.64 
 
 
371 aa  411  1e-113  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  54.2 
 
 
379 aa  405  1.0000000000000001e-112  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  53.62 
 
 
440 aa  407  1.0000000000000001e-112  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  52.96 
 
 
372 aa  407  1.0000000000000001e-112  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  53.48 
 
 
378 aa  404  1.0000000000000001e-112  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  53.48 
 
 
378 aa  402  1e-111  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  53.48 
 
 
378 aa  402  1e-111  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  53.49 
 
 
380 aa  402  1e-111  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  52.8 
 
 
383 aa  402  1e-111  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  54.16 
 
 
381 aa  403  1e-111  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_009512  Pput_4590  carbamoyl phosphate synthase small subunit  53.48 
 
 
386 aa  401  1e-111  Pseudomonas putida F1  Bacteria  normal  normal  0.740896 
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  54.79 
 
 
380 aa  403  1e-111  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  52.94 
 
 
378 aa  402  1e-111  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  55.08 
 
 
382 aa  404  1e-111  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  54.13 
 
 
381 aa  404  1e-111  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  54.81 
 
 
382 aa  402  1e-111  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  55.08 
 
 
391 aa  404  1e-111  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  53.35 
 
 
381 aa  402  1e-111  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  53.48 
 
 
381 aa  402  1e-111  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_008751  Dvul_0268  carbamoyl phosphate synthase small subunit  53.6 
 
 
375 aa  403  1e-111  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.583908 
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  53.74 
 
 
382 aa  398  9.999999999999999e-111  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  53.74 
 
 
382 aa  398  9.999999999999999e-111  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  53.35 
 
 
381 aa  400  9.999999999999999e-111  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  53.74 
 
 
382 aa  398  9.999999999999999e-111  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  53.35 
 
 
381 aa  400  9.999999999999999e-111  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_013173  Dbac_0133  carbamoyl-phosphate synthase, small subunit  54.19 
 
 
378 aa  400  9.999999999999999e-111  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  53.74 
 
 
382 aa  398  9.999999999999999e-111  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  53.74 
 
 
382 aa  398  9.999999999999999e-111  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  53.35 
 
 
381 aa  400  9.999999999999999e-111  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  55.2 
 
 
379 aa  398  9.999999999999999e-111  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  54.86 
 
 
385 aa  400  9.999999999999999e-111  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  53.08 
 
 
381 aa  399  9.999999999999999e-111  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  53.08 
 
 
381 aa  398  9.999999999999999e-111  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  53.74 
 
 
382 aa  401  9.999999999999999e-111  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  53.35 
 
 
381 aa  400  9.999999999999999e-111  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  53.74 
 
 
382 aa  398  9.999999999999999e-111  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  52.93 
 
 
387 aa  399  9.999999999999999e-111  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_012892  B21_00035  hypothetical protein  53.74 
 
 
382 aa  398  9.999999999999999e-111  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  53.74 
 
 
391 aa  398  9.999999999999999e-111  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  54.01 
 
 
393 aa  398  9.999999999999999e-111  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  54.55 
 
 
382 aa  400  9.999999999999999e-111  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  51.99 
 
 
369 aa  400  9.999999999999999e-111  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  53.35 
 
 
381 aa  400  9.999999999999999e-111  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  52.96 
 
 
378 aa  395  1e-109  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  53.89 
 
 
390 aa  395  1e-109  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  54.28 
 
 
382 aa  397  1e-109  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1071  carbamoyl-phosphate synthase, small subunit  52.41 
 
 
369 aa  397  1e-109  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0749952  normal  0.228018 
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  54.13 
 
 
380 aa  396  1e-109  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  51.2 
 
 
376 aa  398  1e-109  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3646  carbamoyl phosphate synthase small subunit  52.37 
 
 
375 aa  397  1e-109  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  53.74 
 
 
382 aa  397  1e-109  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  53.56 
 
 
388 aa  395  1e-109  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  54.13 
 
 
380 aa  396  1e-109  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  53.23 
 
 
380 aa  397  1e-109  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  52.96 
 
 
380 aa  395  1e-109  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  51.88 
 
 
377 aa  395  1e-109  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  52.96 
 
 
380 aa  395  1e-109  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  54.13 
 
 
366 aa  396  1e-109  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  52.67 
 
 
378 aa  392  1e-108  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_007005  Psyr_4192  carbamoyl phosphate synthase small subunit  52.67 
 
 
378 aa  394  1e-108  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  53.35 
 
 
379 aa  393  1e-108  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  52.96 
 
 
378 aa  392  1e-108  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  52.94 
 
 
386 aa  394  1e-108  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_010501  PputW619_0708  carbamoyl phosphate synthase small subunit  53.21 
 
 
386 aa  394  1e-108  Pseudomonas putida W619  Bacteria  normal  0.44923  normal  0.0111499 
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  53.33 
 
 
379 aa  392  1e-108  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  52.63 
 
 
384 aa  394  1e-108  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  53.35 
 
 
381 aa  392  1e-108  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  53.23 
 
 
378 aa  393  1e-108  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_009972  Haur_4242  carbamoyl-phosphate synthase, small subunit  50.53 
 
 
376 aa  392  1e-108  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  52.12 
 
 
383 aa  391  1e-107  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  53.76 
 
 
380 aa  391  1e-107  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_007520  Tcr_0878  carbamoyl-phosphate synthase, small subunit  54.42 
 
 
378 aa  391  1e-107  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  54.13 
 
 
391 aa  389  1e-107  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  53.87 
 
 
389 aa  388  1e-107  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  52.28 
 
 
378 aa  390  1e-107  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
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