More than 300 homologs were found in PanDaTox collection
for query gene Gbem_0378 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_0378  response regulator receiver protein  100 
 
 
204 aa  416  9.999999999999999e-116  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0360  response regulator receiver protein  96.57 
 
 
204 aa  405  1.0000000000000001e-112  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000726536 
 
 
-
 
NC_008609  Ppro_2062  response regulator receiver protein  58.76 
 
 
217 aa  254  5e-67  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2347  response regulator receiver protein  50 
 
 
202 aa  189  2.9999999999999997e-47  Roseiflexus sp. RS-1  Bacteria  normal  0.56815  normal 
 
 
-
 
NC_011146  Gbem_0799  response regulator receiver protein  45.5 
 
 
225 aa  184  1.0000000000000001e-45  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3134  response regulator receiver protein  46.63 
 
 
200 aa  182  2.0000000000000003e-45  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0846  response regulator receiver protein  45.5 
 
 
225 aa  181  5.0000000000000004e-45  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2303  response regulator receiver protein  43.69 
 
 
227 aa  164  5.9999999999999996e-40  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  42 
 
 
353 aa  142  2e-33  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  46.1 
 
 
349 aa  141  6e-33  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0481  response regulator receiver modulated metal dependent phosphohydrolase  47.4 
 
 
348 aa  140  9.999999999999999e-33  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3549  response regulator receiver modulated metal dependent phosphohydrolase  47.4 
 
 
348 aa  140  9.999999999999999e-33  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2248  response regulator receiver modulated metal dependent phosphohydrolase  50.69 
 
 
331 aa  140  1.9999999999999998e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  50.71 
 
 
331 aa  139  1.9999999999999998e-32  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4060  response regulator receiver modulated metal dependent phosphohydrolase  40.85 
 
 
365 aa  139  3.9999999999999997e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0748941 
 
 
-
 
NC_008577  Shewana3_0479  response regulator receiver modulated metal dependent phosphohydrolase  48.05 
 
 
350 aa  137  7e-32  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3544  response regulator receiver modulated diguanylate cyclase  51.97 
 
 
322 aa  136  2e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0106122 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  51.05 
 
 
338 aa  136  2e-31  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  51.05 
 
 
338 aa  136  2e-31  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  51.05 
 
 
338 aa  135  3.0000000000000003e-31  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2589  response regulator receiver modulated metal dependent phosphohydrolase  50.7 
 
 
375 aa  135  3.0000000000000003e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0322399 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  51.05 
 
 
338 aa  135  3.0000000000000003e-31  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3111  response regulator receiver protein  48.97 
 
 
328 aa  134  8e-31  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0637882 
 
 
-
 
NC_004347  SO_4003  response regulator  46.07 
 
 
357 aa  134  9.999999999999999e-31  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  46.9 
 
 
383 aa  134  9.999999999999999e-31  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  46.9 
 
 
383 aa  134  9.999999999999999e-31  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_3005  response regulator receiver  40.74 
 
 
361 aa  133  1.9999999999999998e-30  Dechloromonas aromatica RCB  Bacteria  normal  0.931132  normal 
 
 
-
 
NC_008609  Ppro_1341  response regulator receiver modulated diguanylate cyclase  50.4 
 
 
319 aa  132  1.9999999999999998e-30  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1942  metal dependent phosphohydrolase  36.79 
 
 
363 aa  133  1.9999999999999998e-30  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.284574  n/a   
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  39.11 
 
 
391 aa  132  3e-30  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_009831  Ssed_2864  two-component response regulator  38.46 
 
 
383 aa  132  3e-30  Shewanella sediminis HAW-EB3  Bacteria  normal  0.384945  hitchhiker  0.000000030251 
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  51.05 
 
 
338 aa  132  3.9999999999999996e-30  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  51.05 
 
 
338 aa  132  3.9999999999999996e-30  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  51.05 
 
 
338 aa  132  3.9999999999999996e-30  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_01756  Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)  49.63 
 
 
337 aa  132  3.9999999999999996e-30  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.844049  n/a   
 
 
-
 
NC_013223  Dret_2370  response regulator receiver modulated metal dependent phosphohydrolase  42.11 
 
 
370 aa  131  6e-30  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  49.31 
 
 
338 aa  131  6e-30  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1577  response regulator receiver modulated diguanylate cyclase  44 
 
 
314 aa  131  6.999999999999999e-30  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 
339 aa  131  7.999999999999999e-30  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5503  response regulator receiver  41.26 
 
 
393 aa  130  9e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2978  response regulator receiver modulated metal dependent phosphohydrolase  45.16 
 
 
369 aa  130  9e-30  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.806511 
 
 
-
 
NC_004347  SO_0860  response regulator  50.35 
 
 
339 aa  130  1.0000000000000001e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3334  response regulator receiver modulated metal dependent phosphohydrolase  48.25 
 
 
331 aa  130  1.0000000000000001e-29  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0007  response regulator receiver modulated metal dependent phosphohydrolase  49.25 
 
 
379 aa  129  2.0000000000000002e-29  Dechloromonas aromatica RCB  Bacteria  normal  0.829613  normal  0.0284762 
 
 
-
 
NC_008576  Mmc1_3071  response regulator receiver protein  50.82 
 
 
390 aa  129  3e-29  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000442652 
 
 
-
 
NC_008709  Ping_0978  response regulator receiver modulated diguanylate cyclase  48.85 
 
 
322 aa  129  4.0000000000000003e-29  Psychromonas ingrahamii 37  Bacteria  normal  0.97362  decreased coverage  0.00116316 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  49.32 
 
 
339 aa  129  4.0000000000000003e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2955  response regulator receiver modulated diguanylate cyclase  44.9 
 
 
308 aa  129  4.0000000000000003e-29  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2455  response regulator receiver modulated metal dependent phosphohydrolase  41.5 
 
 
376 aa  129  4.0000000000000003e-29  Magnetococcus sp. MC-1  Bacteria  normal  0.46136  normal  0.292815 
 
 
-
 
NC_008752  Aave_2064  response regulator receiver modulated metal dependent phosphohydrolase  40.86 
 
 
395 aa  128  5.0000000000000004e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  0.18463  normal  0.544249 
 
 
-
 
NC_008321  Shewmr4_0792  response regulator receiver modulated metal dependent phosphohydrolase  47.55 
 
 
331 aa  128  6e-29  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3231  response regulator receiver modulated metal dependent phosphohydrolase  47.55 
 
 
331 aa  128  6e-29  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2951  response regulator receiver protein  49.31 
 
 
340 aa  128  7.000000000000001e-29  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.129077 
 
 
-
 
NC_008740  Maqu_3676  response regulator receiver modulated metal dependent phosphohydrolase  56.3 
 
 
328 aa  127  1.0000000000000001e-28  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_4015  response regulator receiver modulated diguanylate cyclase  48.44 
 
 
315 aa  127  1.0000000000000001e-28  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_3313  response regulator receiver modulated metal dependent phosphohydrolase  50 
 
 
343 aa  127  1.0000000000000001e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00000482447 
 
 
-
 
NC_012560  Avin_50640  response regulator with metal dependent phosphohydrolase activity (two-component)  46.21 
 
 
347 aa  127  1.0000000000000001e-28  Azotobacter vinelandii DJ  Bacteria  normal  0.121542  n/a   
 
 
-
 
NC_011992  Dtpsy_0962  response regulator receiver modulated metal dependent phosphohydrolase  40.32 
 
 
377 aa  126  2.0000000000000002e-28  Acidovorax ebreus TPSY  Bacteria  normal  0.115091  n/a   
 
 
-
 
NC_009439  Pmen_0836  response regulator receiver protein  40.86 
 
 
395 aa  126  2.0000000000000002e-28  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_63210  putative two-component response regulator  42.13 
 
 
393 aa  127  2.0000000000000002e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3723  response regulator receiver  44.44 
 
 
338 aa  125  3e-28  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3165  response regulator receiver modulated metal dependent phosphohydrolase  42.53 
 
 
367 aa  125  3e-28  Magnetococcus sp. MC-1  Bacteria  normal  0.0569095  normal  0.0154692 
 
 
-
 
NC_007348  Reut_B4068  response regulator receiver  43.92 
 
 
377 aa  125  4.0000000000000003e-28  Ralstonia eutropha JMP134  Bacteria  normal  0.706307  n/a   
 
 
-
 
NC_007519  Dde_1941  response regulator receiver sensor signal transduction histidine kinase  47.89 
 
 
395 aa  125  4.0000000000000003e-28  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0596409  n/a   
 
 
-
 
NC_013512  Sdel_0912  metal-dependent phosphohydrolase HD sub domain protein  37.37 
 
 
371 aa  125  5e-28  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2855  response regulator receiver sensor signal transduction histidine kinase  46.71 
 
 
348 aa  125  6e-28  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1044  response regulator receiver modulated metal dependent phosphohydrolase  40.32 
 
 
377 aa  125  6e-28  Acidovorax sp. JS42  Bacteria  normal  normal  0.0516082 
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  50.35 
 
 
346 aa  125  6e-28  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3458  response regulator receiver  41.94 
 
 
365 aa  124  8.000000000000001e-28  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  46.15 
 
 
566 aa  123  1e-27  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_008009  Acid345_2946  response regulator receiver modulated serine phosphatase  42.45 
 
 
384 aa  123  1e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3702  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  49.6 
 
 
863 aa  123  2e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.170309 
 
 
-
 
NC_009654  Mmwyl1_2382  response regulator receiver modulated metal dependent phosphohydrolase  43.97 
 
 
359 aa  123  2e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2262  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  53.28 
 
 
853 aa  123  2e-27  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_4204  response regulator receiver modulated diguanylate cyclase  46.46 
 
 
310 aa  122  3e-27  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2833  response regulator receiver modulated metal dependent phosphohydrolase  40.86 
 
 
360 aa  122  3e-27  Thauera sp. MZ1T  Bacteria  normal  0.809465  n/a   
 
 
-
 
NC_011663  Sbal223_4132  response regulator receiver modulated diguanylate cyclase  46.46 
 
 
310 aa  122  3e-27  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_2179  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  49.26 
 
 
348 aa  122  5e-27  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.378064  n/a   
 
 
-
 
NC_009997  Sbal195_4336  response regulator receiver modulated diguanylate cyclase  45.67 
 
 
310 aa  122  5e-27  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1720  two component LuxR family transcriptional regulator  43.66 
 
 
301 aa  121  6e-27  Opitutus terrae PB90-1  Bacteria  normal  0.162572  normal  0.616267 
 
 
-
 
NC_007948  Bpro_4465  adenylate/guanylate cyclase  45.39 
 
 
561 aa  121  6e-27  Polaromonas sp. JS666  Bacteria  normal  normal  0.419976 
 
 
-
 
NC_008228  Patl_2089  diguanylate cyclase  42.75 
 
 
306 aa  121  6e-27  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1006  response regulator receiver modulated diguanylate cyclase  44.76 
 
 
312 aa  121  7e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_0065  response regulator receiver protein  48 
 
 
305 aa  121  8e-27  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0629  response regulator receiver sensor signal transduction histidine kinase  49.64 
 
 
382 aa  120  9.999999999999999e-27  Acidovorax ebreus TPSY  Bacteria  normal  0.67365  n/a   
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  48.23 
 
 
358 aa  120  9.999999999999999e-27  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  48.92 
 
 
360 aa  120  9.999999999999999e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_6015  response regulator receiver modulated metal dependent phosphohydrolase  47.55 
 
 
333 aa  120  9.999999999999999e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011883  Ddes_1054  response regulator receiver modulated metal dependent phosphohydrolase  42.47 
 
 
359 aa  120  1.9999999999999998e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3790  response regulator receiver modulated diguanylate cyclase  45.16 
 
 
300 aa  119  3e-26  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_25160  response regulator  46.67 
 
 
356 aa  119  3e-26  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1463  response regulator receiver modulated metal dependent phosphohydrolase  42.96 
 
 
364 aa  119  3e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.404054 
 
 
-
 
NC_008782  Ajs_0650  response regulator receiver sensor signal transduction histidine kinase  48.92 
 
 
382 aa  119  3e-26  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  47.54 
 
 
312 aa  119  3e-26  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2507  two component, sigma54 specific, transcriptional regulator, Fis family  43.84 
 
 
488 aa  119  3e-26  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.182398 
 
 
-
 
NC_009654  Mmwyl1_0135  response regulator receiver modulated diguanylate cyclase  48.41 
 
 
306 aa  119  3e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.248217 
 
 
-
 
NC_010625  Bphy_6559  multi-sensor signal transduction histidine kinase  42.05 
 
 
541 aa  118  6e-26  Burkholderia phymatum STM815  Bacteria  normal  normal  0.59439 
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  36.68 
 
 
384 aa  118  6e-26  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_008700  Sama_0748  response regulator receiver protein  43.31 
 
 
312 aa  118  6e-26  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5008  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  47.83 
 
 
708 aa  118  7.999999999999999e-26  Pseudomonas putida GB-1  Bacteria  normal  0.100946  normal 
 
 
-
 
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