More than 300 homologs were found in PanDaTox collection
for query gene GSU1273 on replicon NC_002939
Organism: Geobacter sulfurreducens PCA



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  100 
 
 
374 aa  780    Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_010814  Glov_2083  carbamoyl phosphate synthase small subunit  82.31 
 
 
373 aa  649    Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  94.92 
 
 
374 aa  751    Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  88.2 
 
 
373 aa  702    Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  84.49 
 
 
374 aa  676    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  84.22 
 
 
374 aa  674    Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  83.11 
 
 
373 aa  663    Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  66.49 
 
 
376 aa  516  1.0000000000000001e-145  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_008576  Mmc1_3019  carbamoyl-phosphate synthase small subunit  57.03 
 
 
377 aa  446  1.0000000000000001e-124  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  58.98 
 
 
374 aa  443  1e-123  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  57.29 
 
 
383 aa  436  1e-121  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  56.92 
 
 
380 aa  437  1e-121  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  56.99 
 
 
386 aa  434  1e-120  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  56.15 
 
 
373 aa  432  1e-120  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  56.3 
 
 
386 aa  430  1e-119  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  56.18 
 
 
373 aa  426  1e-118  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  55.5 
 
 
372 aa  426  1e-118  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  56.18 
 
 
373 aa  427  1e-118  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  56.18 
 
 
373 aa  427  1e-118  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  55.44 
 
 
369 aa  423  1e-117  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  55.7 
 
 
381 aa  423  1e-117  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  56.84 
 
 
393 aa  419  1e-116  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  55.8 
 
 
391 aa  416  9.999999999999999e-116  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  55.8 
 
 
379 aa  415  9.999999999999999e-116  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  54.55 
 
 
382 aa  412  1e-114  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  55.09 
 
 
397 aa  414  1e-114  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  54.57 
 
 
380 aa  414  1e-114  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_007651  BTH_I2783  carbamoyl phosphate synthase small subunit  54.96 
 
 
381 aa  412  1e-114  Burkholderia thailandensis E264  Bacteria  normal  0.259596  n/a   
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  53.58 
 
 
369 aa  412  1e-114  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  54.81 
 
 
381 aa  410  1e-113  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  54.81 
 
 
381 aa  410  1e-113  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0564  carbamoyl phosphate synthase small subunit  54.81 
 
 
381 aa  410  1e-113  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  54.55 
 
 
381 aa  408  1e-113  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  54.01 
 
 
378 aa  410  1e-113  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  54.81 
 
 
381 aa  410  1e-113  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  54.81 
 
 
381 aa  410  1e-113  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  53.85 
 
 
371 aa  408  1e-113  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  54.69 
 
 
440 aa  409  1e-113  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  56.65 
 
 
380 aa  410  1e-113  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  54.3 
 
 
380 aa  408  1e-113  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  53.74 
 
 
378 aa  408  1e-113  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  54.55 
 
 
381 aa  409  1e-113  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  55.76 
 
 
390 aa  405  1.0000000000000001e-112  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  55.41 
 
 
385 aa  407  1.0000000000000001e-112  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  54.03 
 
 
380 aa  406  1.0000000000000001e-112  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  53.97 
 
 
381 aa  405  1.0000000000000001e-112  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  54.28 
 
 
378 aa  406  1.0000000000000001e-112  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  55.73 
 
 
366 aa  406  1.0000000000000001e-112  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  54.03 
 
 
380 aa  406  1.0000000000000001e-112  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  54.69 
 
 
381 aa  407  1.0000000000000001e-112  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  52.94 
 
 
381 aa  408  1.0000000000000001e-112  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  53.6 
 
 
383 aa  403  1e-111  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1071  carbamoyl-phosphate synthase, small subunit  55.35 
 
 
369 aa  402  1e-111  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0749952  normal  0.228018 
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  53.95 
 
 
384 aa  403  1e-111  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  55.32 
 
 
389 aa  400  9.999999999999999e-111  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  54.28 
 
 
382 aa  399  9.999999999999999e-111  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_008825  Mpe_A1261  carbamoyl-phosphate synthase small subunit  56.06 
 
 
383 aa  400  9.999999999999999e-111  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.00672288 
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  53.23 
 
 
378 aa  400  9.999999999999999e-111  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  54.45 
 
 
386 aa  398  9.999999999999999e-111  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  54.32 
 
 
381 aa  399  9.999999999999999e-111  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_010717  PXO_00088  carbamoyl phosphate synthase small subunit  55.16 
 
 
390 aa  398  9.999999999999999e-111  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.562291  n/a   
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  54.28 
 
 
391 aa  398  9.999999999999999e-111  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  52.25 
 
 
369 aa  401  9.999999999999999e-111  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  54.67 
 
 
391 aa  398  9.999999999999999e-111  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  53.08 
 
 
387 aa  399  9.999999999999999e-111  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_007951  Bxe_A1256  carbamoyl phosphate synthase small subunit  53.89 
 
 
391 aa  399  9.999999999999999e-111  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  53.76 
 
 
378 aa  400  9.999999999999999e-111  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_008390  Bamb_1167  carbamoyl phosphate synthase small subunit  54.57 
 
 
380 aa  400  9.999999999999999e-111  Burkholderia ambifaria AMMD  Bacteria  normal  0.278191  n/a   
 
 
-
 
NC_010622  Bphy_0873  carbamoyl phosphate synthase small subunit  54.42 
 
 
384 aa  400  9.999999999999999e-111  Burkholderia phymatum STM815  Bacteria  normal  0.644445  normal  0.264285 
 
 
-
 
NC_010551  BamMC406_1179  carbamoyl phosphate synthase small subunit  54.57 
 
 
381 aa  400  9.999999999999999e-111  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.381236 
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  53.21 
 
 
378 aa  395  1e-109  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  53.17 
 
 
383 aa  397  1e-109  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  53.49 
 
 
378 aa  397  1e-109  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_010730  SYO3AOP1_1361  carbamoyl phosphate synthase small subunit  51.88 
 
 
376 aa  397  1e-109  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  53.48 
 
 
386 aa  396  1e-109  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_010084  Bmul_2030  carbamoyl phosphate synthase small subunit  54.3 
 
 
380 aa  397  1e-109  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.115427  normal 
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  54.13 
 
 
379 aa  397  1e-109  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_010681  Bphyt_2868  carbamoyl phosphate synthase small subunit  54.16 
 
 
384 aa  396  1e-109  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00228162  normal 
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  54.28 
 
 
382 aa  397  1e-109  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3646  carbamoyl phosphate synthase small subunit  53.05 
 
 
375 aa  397  1e-109  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  54.79 
 
 
379 aa  395  1e-109  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_013173  Dbac_0133  carbamoyl-phosphate synthase, small subunit  53.74 
 
 
378 aa  395  1e-109  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  53.49 
 
 
376 aa  396  1e-109  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_007973  Rmet_2195  carbamoyl phosphate synthase small subunit  53.08 
 
 
382 aa  395  1e-109  Cupriavidus metallidurans CH34  Bacteria  normal  0.0764461  normal  0.137113 
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  53.48 
 
 
382 aa  395  1e-109  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4932  carbamoyl-phosphate synthase, small subunit  53.81 
 
 
388 aa  397  1e-109  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.259128 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  53.87 
 
 
384 aa  395  1e-109  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_008751  Dvul_0268  carbamoyl phosphate synthase small subunit  55.08 
 
 
375 aa  397  1e-109  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.583908 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  54.01 
 
 
382 aa  395  1e-109  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  53.21 
 
 
382 aa  392  1e-108  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  53.89 
 
 
378 aa  391  1e-108  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  53.42 
 
 
416 aa  391  1e-108  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  53.48 
 
 
378 aa  394  1e-108  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  53.81 
 
 
394 aa  393  1e-108  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  53.21 
 
 
382 aa  392  1e-108  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  53.83 
 
 
398 aa  394  1e-108  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  53.21 
 
 
378 aa  394  1e-108  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  54.42 
 
 
381 aa  394  1e-108  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  52.94 
 
 
367 aa  393  1e-108  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  53.35 
 
 
378 aa  394  1e-108  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
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