130 homologs were found in PanDaTox collection
for query gene GSU0517 on replicon NC_002939
Organism: Geobacter sulfurreducens PCA



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU0517  hypothetical protein  100 
 
 
404 aa  811    Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.00645936  n/a   
 
 
-
 
NC_007517  Gmet_3030  hypothetical protein  49.75 
 
 
398 aa  369  1e-101  Geobacter metallireducens GS-15  Bacteria  normal  0.278089  normal 
 
 
-
 
NC_009483  Gura_0974  protein of unknown function DUF294, nucleotidyltransferase putative  35.59 
 
 
413 aa  231  2e-59  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00255742  n/a   
 
 
-
 
NC_011146  Gbem_1513  protein of unknown function DUF294 nucleotidyltransferase putative  30.65 
 
 
424 aa  151  2e-35  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1421  protein of unknown function DUF294, nucleotidyltransferase putative  28.4 
 
 
409 aa  150  5e-35  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00000526664  n/a   
 
 
-
 
NC_012918  GM21_2703  protein of unknown function DUF294 nucleotidyltransferase putative  30.41 
 
 
424 aa  145  9e-34  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000043685 
 
 
-
 
NC_007517  Gmet_0738  protein of unknown function DUF294, nucleotidyltransferase putative  27.84 
 
 
403 aa  136  6.0000000000000005e-31  Geobacter metallireducens GS-15  Bacteria  normal  0.0112629  normal 
 
 
-
 
NC_012918  GM21_2700  protein of unknown function DUF294 nucleotidyltransferase putative  29.04 
 
 
405 aa  136  7.000000000000001e-31  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000230208 
 
 
-
 
NC_011146  Gbem_1516  protein of unknown function DUF294 nucleotidyltransferase putative  30.06 
 
 
405 aa  135  9.999999999999999e-31  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00508956  n/a   
 
 
-
 
NC_010814  Glov_1400  protein of unknown function DUF294 nucleotidyltransferase putative  29.64 
 
 
404 aa  131  2.0000000000000002e-29  Geobacter lovleyi SZ  Bacteria  normal  0.0212524  n/a   
 
 
-
 
NC_002939  GSU1067  hypothetical protein  28.27 
 
 
465 aa  128  2.0000000000000002e-28  Geobacter sulfurreducens PCA  Bacteria  normal  0.327143  n/a   
 
 
-
 
NC_010814  Glov_2907  protein of unknown function DUF294 nucleotidyltransferase putative  29.66 
 
 
403 aa  126  6e-28  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3713  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  27.81 
 
 
613 aa  97.1  6e-19  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000235103  unclonable  0.0000000288509 
 
 
-
 
NC_013501  Rmar_1615  putative CBS domain and cyclic nucleotide- regulated nucleotidyltransferase  26.21 
 
 
636 aa  92.8  1e-17  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2002  cyclic nucleotide-binding protein  27.74 
 
 
641 aa  90.9  3e-17  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2049  protein of unknown function DUF294, nucleotidyltransferase putative  30.51 
 
 
373 aa  89.7  9e-17  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.82123  normal  0.388893 
 
 
-
 
NC_009523  RoseRS_2007  CBS domain-containing protein  28.89 
 
 
623 aa  88.6  2e-16  Roseiflexus sp. RS-1  Bacteria  normal  0.232416  decreased coverage  0.00139706 
 
 
-
 
NC_013501  Rmar_2113  putative CBS domain and cyclic nucleotide- regulated nucleotidyltransferase  26.97 
 
 
644 aa  87.8  3e-16  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_1034  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  24.63 
 
 
660 aa  86.3  9e-16  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.0124015 
 
 
-
 
NC_013411  GYMC61_2249  protein of unknown function DUF294 nucleotidyltransferase putative  25.25 
 
 
350 aa  85.5  0.000000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007512  Plut_1009  cyclic nucleotide-binding domain-containing protein  26.92 
 
 
649 aa  83.2  0.000000000000008  Chlorobium luteolum DSM 273  Bacteria  normal  0.959275  normal  0.0476299 
 
 
-
 
NC_010424  Daud_1568  cyclic nucleotide-binding protein  25.63 
 
 
634 aa  82.8  0.000000000000009  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3932  CBS domain-containing protein  28.46 
 
 
623 aa  82  0.00000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.177243  normal  0.11098 
 
 
-
 
NC_010831  Cphamn1_1304  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  24.92 
 
 
650 aa  81.6  0.00000000000002  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.333083  normal  0.600467 
 
 
-
 
NC_011901  Tgr7_1025  cyclic nucleotide-binding protein  25 
 
 
645 aa  80.9  0.00000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1043  cyclic nucleotide-binding protein  26.23 
 
 
624 aa  80.9  0.00000000000004  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.597575 
 
 
-
 
NC_010814  Glov_1809  putative signal-transduction protein with CBS domains  23.42 
 
 
478 aa  80.5  0.00000000000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4338  CBS domain-containing protein  23.08 
 
 
618 aa  80.1  0.00000000000006  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2478  putative CBS domain and cyclic nucleotide- regulated nucleotidyltransferase  24.5 
 
 
642 aa  79.7  0.00000000000008  Desulfohalobium retbaense DSM 5692  Bacteria  normal  hitchhiker  0.00776763 
 
 
-
 
NC_011662  Tmz1t_2620  putative signal transduction protein with CBS domains  26.02 
 
 
480 aa  79.3  0.0000000000001  Thauera sp. MZ1T  Bacteria  normal  0.0774627  n/a   
 
 
-
 
NC_013385  Adeg_1849  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  24.56 
 
 
633 aa  79  0.0000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2480  CBS domain-containing protein  21.41 
 
 
639 aa  77  0.0000000000006  Flavobacterium johnsoniae UW101  Bacteria  normal  0.218166  n/a   
 
 
-
 
NC_010002  Daci_5960  CBS domain-containing protein  27.93 
 
 
617 aa  77  0.0000000000006  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_1266  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  23.51 
 
 
649 aa  76.6  0.0000000000008  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1453  cyclic nucleotide-binding domain-containing protein  24.52 
 
 
604 aa  75.9  0.000000000001  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0554  putative CBS domain and cyclic nucleotide- regulated nucleotidyltransferase  25.09 
 
 
637 aa  75.5  0.000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2369  cyclic nucleotide-binding protein  25.74 
 
 
615 aa  75.1  0.000000000002  Shewanella loihica PV-4  Bacteria  normal  hitchhiker  0.00413273 
 
 
-
 
NC_009654  Mmwyl1_0699  CBS domain-containing protein  26.51 
 
 
625 aa  74.3  0.000000000003  Marinomonas sp. MWYL1  Bacteria  normal  0.0116377  normal 
 
 
-
 
NC_010506  Swoo_2835  CBS domain-containing protein  26.74 
 
 
615 aa  73.6  0.000000000005  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00609535 
 
 
-
 
NC_008340  Mlg_2056  signal-transduction protein  24.32 
 
 
485 aa  73.2  0.000000000007  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.120352 
 
 
-
 
NC_009831  Ssed_1751  cyclic nucleotide-binding protein  26.91 
 
 
615 aa  72.4  0.00000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0246988 
 
 
-
 
NC_013173  Dbac_1022  cyclic nucleotide-binding protein  28.04 
 
 
613 aa  72  0.00000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1543  putative signal-transduction protein with CBS domains  25.62 
 
 
600 aa  70.9  0.00000000004  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00292919  n/a   
 
 
-
 
NC_010814  Glov_1394  putative signal-transduction protein with CBS domains  23.88 
 
 
485 aa  69.7  0.00000000009  Geobacter lovleyi SZ  Bacteria  normal  0.332611  n/a   
 
 
-
 
NC_008043  TM1040_3667  cyclic nucleotide-binding protein  25.53 
 
 
606 aa  69.7  0.0000000001  Ruegeria sp. TM1040  Bacteria  normal  0.773951  normal 
 
 
-
 
NC_007519  Dde_0629  cyclic nucleotide-binding domain-containing protein  25.17 
 
 
667 aa  68.6  0.0000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2004  cyclic nucleotide-binding protein  24.9 
 
 
622 aa  67.8  0.0000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.429129 
 
 
-
 
NC_003910  CPS_4954  CBS domain-containing protein  24.66 
 
 
624 aa  67.4  0.0000000004  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3158  cyclic nucleotide-binding domain-containing protein  26.64 
 
 
596 aa  67  0.0000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.664732  n/a   
 
 
-
 
NC_013946  Mrub_0769  hypothetical protein  28.31 
 
 
574 aa  67  0.0000000006  Meiothermus ruber DSM 1279  Bacteria  normal  0.463827  normal 
 
 
-
 
NC_013889  TK90_1866  cyclic nucleotide-binding protein  30.74 
 
 
615 aa  66.6  0.0000000007  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.450839  normal  0.446941 
 
 
-
 
NC_011145  AnaeK_3274  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  27.63 
 
 
596 aa  66.6  0.0000000008  Anaeromyxobacter sp. K  Bacteria  normal  0.877425  n/a   
 
 
-
 
NC_009052  Sbal_2637  signal-transduction protein  26.15 
 
 
615 aa  65.9  0.000000001  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0837  cyclic nucleotide-binding protein  21.96 
 
 
629 aa  65.5  0.000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1296  hypothetical protein  27.2 
 
 
601 aa  64.7  0.000000003  Meiothermus ruber DSM 1279  Bacteria  normal  0.922257  normal 
 
 
-
 
NC_011663  Sbal223_1712  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  25.8 
 
 
615 aa  64.3  0.000000004  Shewanella baltica OS223  Bacteria  normal  0.76121  hitchhiker  0.00000133647 
 
 
-
 
NC_008577  Shewana3_1576  cyclic nucleotide-binding protein  25.98 
 
 
620 aa  64.3  0.000000004  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00132625 
 
 
-
 
NC_008709  Ping_0264  signal protein  25.29 
 
 
614 aa  64.3  0.000000004  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2672  signal-transduction protein  25.8 
 
 
615 aa  64.3  0.000000004  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2751  CBS domain-containing protein  25.8 
 
 
615 aa  63.9  0.000000004  Shewanella baltica OS195  Bacteria  normal  normal  0.0342062 
 
 
-
 
NC_013889  TK90_1863  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  25.88 
 
 
625 aa  63.9  0.000000005  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0994673  normal  0.46863 
 
 
-
 
NC_008340  Mlg_0670  cyclic nucleotide-binding protein  25.42 
 
 
625 aa  63.9  0.000000005  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2693  hypothetical protein  24.81 
 
 
607 aa  63.5  0.000000007  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2052  cyclic nucleotide-binding protein  20.85 
 
 
663 aa  63.2  0.000000008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.19282 
 
 
-
 
NC_007963  Csal_0978  cyclic nucleotide-binding domain-containing protein  26.54 
 
 
635 aa  62.4  0.00000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.082367  n/a   
 
 
-
 
NC_008309  HS_0302  signal-transduction protein  23.69 
 
 
648 aa  62.8  0.00000001  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1892  hypothetical protein  25.58 
 
 
599 aa  62  0.00000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2856  CBS domain-containing protein  25.27 
 
 
620 aa  61.6  0.00000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I2831  putative nucleotidyltransferases  24.07 
 
 
610 aa  60.8  0.00000004  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2504  cyclic nucleotide-binding protein  28.1 
 
 
628 aa  60.5  0.00000005  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4543  CBS domain-containing protein  22.34 
 
 
639 aa  60.5  0.00000005  Pseudomonas mendocina ymp  Bacteria  normal  0.661781  normal 
 
 
-
 
NC_008463  PA14_22370  hypothetical protein  25.38 
 
 
599 aa  60.1  0.00000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000000015085 
 
 
-
 
NC_012856  Rpic12D_0450  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  28.03 
 
 
608 aa  59.3  0.0000001  Ralstonia pickettii 12D  Bacteria  normal  0.307047  normal 
 
 
-
 
NC_007298  Daro_1635  cyclic nucleotide-binding/CBS/putative nucleotidyltransferase  25.33 
 
 
646 aa  58.9  0.0000001  Dechloromonas aromatica RCB  Bacteria  normal  0.5663  normal 
 
 
-
 
NC_011901  Tgr7_3131  cyclic nucleotide-binding domain (cNMP-BD) protein  22.15 
 
 
633 aa  59.3  0.0000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4030  CBS domain-containing protein  25.9 
 
 
641 aa  59.3  0.0000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.210383  normal 
 
 
-
 
NC_007643  Rru_A0634  cyclic nucleotide-binding domain-containing protein  28.64 
 
 
604 aa  58.2  0.0000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0507059  n/a   
 
 
-
 
NC_008688  Pden_4553  cyclic nucleotide-binding protein  23.39 
 
 
603 aa  58.5  0.0000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.984926  normal 
 
 
-
 
NC_009783  VIBHAR_00167  cyclic nucleotide binding protein  22.9 
 
 
608 aa  58.9  0.0000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007760  Adeh_0770  cyclic nucleotide-binding domain-containing protein  27.16 
 
 
603 aa  58.2  0.0000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.461269  n/a   
 
 
-
 
NC_010524  Lcho_2504  CBS domain-containing protein  26.35 
 
 
612 aa  58.2  0.0000003  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000127678 
 
 
-
 
NC_013457  VEA_000925  Signal transduction protein  21.28 
 
 
622 aa  57.4  0.0000004  Vibrio sp. Ex25  Bacteria  normal  0.334534  n/a   
 
 
-
 
NC_009338  Mflv_3086  cyclic nucleotide-binding protein  28.28 
 
 
615 aa  57.4  0.0000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.238532 
 
 
-
 
NC_009439  Pmen_4097  CBS domain-containing protein  28.16 
 
 
643 aa  57  0.0000005  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_0267  cyclic nucleotide-binding protein  22.88 
 
 
625 aa  56.6  0.0000007  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1548  cyclic nucleotide-binding protein  28.24 
 
 
615 aa  55.8  0.000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0480  cyclic nucleotide-binding protein  25.66 
 
 
608 aa  56.2  0.000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0822  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  26.12 
 
 
603 aa  55.5  0.000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2028  signal-transduction protein  26.61 
 
 
481 aa  55.5  0.000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.240016 
 
 
-
 
NC_009783  VIBHAR_01888  hypothetical protein  25.86 
 
 
629 aa  55.1  0.000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002201  predicted signal-transduction protein  21.77 
 
 
561 aa  55.1  0.000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1119  signal-transduction protein  20.6 
 
 
615 aa  54.3  0.000003  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0873  cyclic nucleotide-binding domain-containing protein  25.76 
 
 
605 aa  54.7  0.000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.563434  n/a   
 
 
-
 
NC_008340  Mlg_2005  protein of unknown function DUF294, nucleotidyltransferase putative  24.76 
 
 
375 aa  54.7  0.000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.469431 
 
 
-
 
NC_007492  Pfl01_5185  cyclic nucleotide-binding (cNMP-bd) protein  25.52 
 
 
646 aa  53.9  0.000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.255954  normal  0.285696 
 
 
-
 
NC_007948  Bpro_4152  signal-transduction protein  25.63 
 
 
486 aa  53.9  0.000005  Polaromonas sp. JS666  Bacteria  normal  normal  0.729428 
 
 
-
 
NC_009675  Anae109_3142  CBS domain-containing protein  29.06 
 
 
608 aa  53.9  0.000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_3753  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  29.11 
 
 
601 aa  53.5  0.000007  Anaeromyxobacter sp. K  Bacteria  normal  0.53341  n/a   
 
 
-
 
NC_011145  AnaeK_0818  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  25.71 
 
 
603 aa  53.1  0.000008  Anaeromyxobacter sp. K  Bacteria  normal  0.410169  n/a   
 
 
-
 
NC_009512  Pput_0380  CBS domain-containing protein  24.64 
 
 
645 aa  53.1  0.000009  Pseudomonas putida F1  Bacteria  normal  0.488205  normal 
 
 
-
 
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