More than 300 homologs were found in PanDaTox collection
for query gene Franean1_6496 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_6496  two component transcriptional regulator  100 
 
 
231 aa  459  9.999999999999999e-129  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00132974  normal  0.338684 
 
 
-
 
NC_007777  Francci3_0321  two component transcriptional regulator  87.01 
 
 
406 aa  392  1e-108  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3036  two component transcriptional regulator, winged helix family  80.8 
 
 
273 aa  362  3e-99  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.106658  normal 
 
 
-
 
NC_008699  Noca_3695  response regulator receiver  77.78 
 
 
236 aa  355  3.9999999999999996e-97  Nocardioides sp. JS614  Bacteria  normal  0.795948  n/a   
 
 
-
 
NC_009380  Strop_2130  response regulator receiver  76.89 
 
 
252 aa  342  2e-93  Salinispora tropica CNB-440  Bacteria  normal  0.539517  hitchhiker  0.00279069 
 
 
-
 
NC_009953  Sare_2277  two component transcriptional regulator  76.34 
 
 
248 aa  337  9.999999999999999e-92  Salinispora arenicola CNS-205  Bacteria  normal  0.113906  normal  0.0109188 
 
 
-
 
NC_013521  Sked_32700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  74.11 
 
 
271 aa  330  1e-89  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.442824  normal  0.485424 
 
 
-
 
NC_013093  Amir_1724  two component transcriptional regulator, winged helix family  73.57 
 
 
243 aa  326  2.0000000000000001e-88  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5255  two component transcriptional regulator, winged helix family  74.45 
 
 
242 aa  323  1e-87  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0134474  normal 
 
 
-
 
NC_013235  Namu_4688  two component transcriptional regulator, winged helix family  75.11 
 
 
252 aa  323  2e-87  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0804  two component transcriptional regulator, winged helix family  66.08 
 
 
246 aa  311  6.999999999999999e-84  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008726  Mvan_4429  two component transcriptional regulator  70.93 
 
 
250 aa  309  2e-83  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.133228  normal 
 
 
-
 
NC_008541  Arth_0655  two component transcriptional regulator  66.08 
 
 
246 aa  308  2.9999999999999997e-83  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13797  two component transcriptional regulatory protein  69 
 
 
286 aa  307  9e-83  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.173423 
 
 
-
 
NC_009338  Mflv_2266  two component transcriptional regulator  70.48 
 
 
249 aa  304  7e-82  Mycobacterium gilvum PYR-GCK  Bacteria  decreased coverage  0.00896474  normal 
 
 
-
 
NC_009077  Mjls_3941  two component transcriptional regulator  70.54 
 
 
254 aa  299  2e-80  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0990172 
 
 
-
 
NC_008146  Mmcs_3926  two component transcriptional regulator  70.54 
 
 
254 aa  299  2e-80  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4000  two component transcriptional regulator  70.54 
 
 
254 aa  299  2e-80  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6147  two component transcriptional regulator, winged helix family  63.25 
 
 
244 aa  286  1e-76  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.200947 
 
 
-
 
NC_008726  Mvan_2296  two component transcriptional regulator  63.44 
 
 
255 aa  279  3e-74  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.398969  normal  0.240289 
 
 
-
 
NC_009565  TBFG_11051  two component system transcriptional regulator trcR  61.5 
 
 
257 aa  276  3e-73  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_22060  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  61.06 
 
 
254 aa  271  5.000000000000001e-72  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0729677  n/a   
 
 
-
 
NC_012803  Mlut_04130  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  59.66 
 
 
236 aa  271  5.000000000000001e-72  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118973  n/a   
 
 
-
 
NC_009664  Krad_3620  two component transcriptional regulator, winged helix family  62.61 
 
 
239 aa  270  1e-71  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0253056  normal  0.477246 
 
 
-
 
NC_013530  Xcel_2937  two component transcriptional regulator, winged helix family  60 
 
 
243 aa  266  2e-70  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0717  two component transcriptional regulator, winged helix family  59.83 
 
 
242 aa  265  5e-70  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000387016 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  59.73 
 
 
237 aa  265  5.999999999999999e-70  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4508  two component transcriptional regulator, winged helix family  58.77 
 
 
231 aa  265  7e-70  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1449  two component transcriptional regulator  57.46 
 
 
246 aa  264  8.999999999999999e-70  Acidothermus cellulolyticus 11B  Bacteria  normal  0.566781  normal 
 
 
-
 
NC_013169  Ksed_21620  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  59.64 
 
 
238 aa  263  1e-69  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.019443  normal  0.0473518 
 
 
-
 
NC_009953  Sare_4064  two component transcriptional regulator  58.67 
 
 
233 aa  263  1e-69  Salinispora arenicola CNS-205  Bacteria  normal  0.98903  normal  0.0666639 
 
 
-
 
NC_014158  Tpau_3631  two component transcriptional regulator, winged helix family  58.93 
 
 
235 aa  263  1e-69  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3686  response regulator receiver  59.11 
 
 
233 aa  262  3e-69  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4973  two component transcriptional regulator  59.19 
 
 
239 aa  261  4e-69  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4590  two component transcriptional regulator  59.19 
 
 
239 aa  261  4e-69  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4678  two component transcriptional regulator  59.19 
 
 
239 aa  261  4e-69  Mycobacterium sp. KMS  Bacteria  normal  0.337028  normal  0.895878 
 
 
-
 
NC_013441  Gbro_0822  response regulator receiver  56.95 
 
 
241 aa  261  8e-69  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0530683  n/a   
 
 
-
 
NC_013093  Amir_0379  two component transcriptional regulator, winged helix family  59.05 
 
 
233 aa  260  1e-68  Actinosynnema mirum DSM 43827  Bacteria  normal  0.605912  n/a   
 
 
-
 
NC_009565  TBFG_10772  two component system response transcriptional positive regulator phoP  59.19 
 
 
247 aa  260  1e-68  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.864575 
 
 
-
 
NC_013757  Gobs_4657  two component transcriptional regulator, winged helix family  58.74 
 
 
240 aa  259  3e-68  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5175  two component transcriptional regulator  57.85 
 
 
236 aa  256  1e-67  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_31480  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  57.45 
 
 
239 aa  256  2e-67  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00376265  normal  0.556858 
 
 
-
 
NC_013510  Tcur_0578  two component transcriptional regulator, winged helix family  58.11 
 
 
244 aa  256  2e-67  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0784  two component transcriptional regulator  58.12 
 
 
239 aa  256  2e-67  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1581  two component transcriptional regulator  57.85 
 
 
238 aa  256  3e-67  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2051  two component transcriptional regulator, winged helix family  57.33 
 
 
236 aa  254  7e-67  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_0219  two component transcriptional regulator  58.26 
 
 
237 aa  252  3e-66  Salinispora arenicola CNS-205  Bacteria  normal  0.127265  hitchhiker  0.00333518 
 
 
-
 
NC_014151  Cfla_0569  two component transcriptional regulator, winged helix family  62.11 
 
 
248 aa  252  4.0000000000000004e-66  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00419725 
 
 
-
 
NC_013595  Sros_8872  response regulator receiver protein  60.81 
 
 
234 aa  250  1e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  0.347509  normal 
 
 
-
 
NC_013172  Bfae_07910  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  57.21 
 
 
239 aa  250  2e-65  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4916  response regulator receiver protein  57.58 
 
 
233 aa  249  3e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0234  two component transcriptional regulator  57.59 
 
 
242 aa  249  3e-65  Frankia sp. CcI3  Bacteria  normal  normal  0.925989 
 
 
-
 
NC_013595  Sros_8879  response regulator receiver protein  57.4 
 
 
235 aa  248  6e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  0.103439  normal 
 
 
-
 
NC_009921  Franean1_6588  two component transcriptional regulator  56.7 
 
 
229 aa  246  3e-64  Frankia sp. EAN1pec  Bacteria  normal  0.13217  normal 
 
 
-
 
NC_011886  Achl_0899  two component transcriptional regulator, winged helix family  58.12 
 
 
236 aa  244  6e-64  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.383063 
 
 
-
 
NC_007777  Francci3_0308  two component transcriptional regulator  52.84 
 
 
239 aa  242  3.9999999999999997e-63  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_3276  winged helix family two component transcriptional regulator  55.51 
 
 
234 aa  240  2e-62  Thermobispora bispora DSM 43833  Bacteria  normal  0.208422  normal  0.192837 
 
 
-
 
NC_014165  Tbis_3267  winged helix family two component transcriptional regulator  59.11 
 
 
229 aa  239  2e-62  Thermobispora bispora DSM 43833  Bacteria  normal  0.0891778  normal  0.213955 
 
 
-
 
NC_010816  BLD_0005  response regulator  51.68 
 
 
243 aa  239  2.9999999999999997e-62  Bifidobacterium longum DJO10A  Bacteria  normal  0.201532  n/a   
 
 
-
 
NC_013947  Snas_5144  two component transcriptional regulator, winged helix family  56.11 
 
 
236 aa  239  2.9999999999999997e-62  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.204078  normal  0.858106 
 
 
-
 
NC_012669  Bcav_0840  two component transcriptional regulator, winged helix family  56.14 
 
 
241 aa  237  9e-62  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.214337  normal  0.533835 
 
 
-
 
NC_014151  Cfla_3340  two component transcriptional regulator, winged helix family  56.19 
 
 
258 aa  236  2e-61  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.0454745 
 
 
-
 
NC_009921  Franean1_6507  two component transcriptional regulator  51.97 
 
 
270 aa  234  6e-61  Frankia sp. EAN1pec  Bacteria  normal  0.0763131  normal  0.20607 
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  53.71 
 
 
236 aa  231  7.000000000000001e-60  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  51.26 
 
 
246 aa  229  3e-59  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_007333  Tfu_0257  response regulator receiver  51.33 
 
 
241 aa  228  5e-59  Thermobifida fusca YX  Bacteria  normal  0.926332  n/a   
 
 
-
 
NC_009077  Mjls_4681  two component transcriptional regulator  52.91 
 
 
230 aa  228  5e-59  Mycobacterium sp. JLS  Bacteria  normal  normal  0.354926 
 
 
-
 
NC_008146  Mmcs_4301  two component transcriptional regulator  52.91 
 
 
230 aa  228  5e-59  Mycobacterium sp. MCS  Bacteria  normal  0.681825  n/a   
 
 
-
 
NC_008705  Mkms_4387  two component transcriptional regulator  52.91 
 
 
230 aa  228  5e-59  Mycobacterium sp. KMS  Bacteria  normal  0.0316317  normal 
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  53.81 
 
 
228 aa  228  6e-59  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_013721  HMPREF0424_0720  response regulator receiver domain protein  50.43 
 
 
246 aa  228  7e-59  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.351492 
 
 
-
 
NC_009338  Mflv_1887  two component transcriptional regulator  53.3 
 
 
231 aa  227  9e-59  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.882564  normal  0.344123 
 
 
-
 
NC_008726  Mvan_4844  two component transcriptional regulator  53.74 
 
 
231 aa  226  2e-58  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.312171 
 
 
-
 
NC_013235  Namu_4408  two component transcriptional regulator, winged helix family  52 
 
 
230 aa  226  3e-58  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  53.6 
 
 
224 aa  224  1e-57  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  53.6 
 
 
224 aa  224  1e-57  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  52.02 
 
 
240 aa  224  1e-57  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  49.33 
 
 
224 aa  221  7e-57  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_009565  TBFG_10999  two component response transcriptional regulatory protein MprA  51.11 
 
 
230 aa  219  1.9999999999999999e-56  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000188235  normal  0.671639 
 
 
-
 
NC_008578  Acel_1595  two component transcriptional regulator  53.78 
 
 
227 aa  219  3e-56  Acidothermus cellulolyticus 11B  Bacteria  normal  0.526383  normal  0.570373 
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  49.33 
 
 
228 aa  216  2.9999999999999998e-55  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  49.33 
 
 
224 aa  216  2.9999999999999998e-55  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  50.67 
 
 
225 aa  214  8e-55  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_013093  Amir_2632  two component transcriptional regulator, winged helix family  50.22 
 
 
229 aa  214  9.999999999999999e-55  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  48.26 
 
 
233 aa  213  9.999999999999999e-55  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_6397  response regulator receiver protein  51.95 
 
 
237 aa  214  9.999999999999999e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.680662  normal  0.0804167 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  47.98 
 
 
225 aa  213  1.9999999999999998e-54  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1384  two component transcriptional regulator  49.34 
 
 
252 aa  211  7e-54  Salinispora arenicola CNS-205  Bacteria  decreased coverage  0.00801111  normal  0.0620226 
 
 
-
 
NC_009380  Strop_1418  response regulator receiver  49.55 
 
 
251 aa  209  2e-53  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0582944 
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  51.09 
 
 
225 aa  209  2e-53  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1823  two component transcriptional regulator, winged helix family  53.91 
 
 
241 aa  209  3e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.506413  normal 
 
 
-
 
NC_013525  Tter_1098  two component transcriptional regulator, winged helix family  48.02 
 
 
228 aa  208  7e-53  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014248  Aazo_0389  winged helix family two component transcriptional regulator  48.43 
 
 
224 aa  207  9e-53  'Nostoc azollae' 0708  Bacteria  normal  0.667669  n/a   
 
 
-
 
NC_009253  Dred_0759  two component transcriptional regulator  47.3 
 
 
223 aa  207  1e-52  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00128917  n/a   
 
 
-
 
NC_013131  Caci_7401  two component transcriptional regulator, winged helix family  55.8 
 
 
229 aa  207  1e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.263718  normal 
 
 
-
 
NC_013131  Caci_0208  two component transcriptional regulator, winged helix family  49.33 
 
 
238 aa  204  9e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1131  two component transcriptional regulator  51.12 
 
 
226 aa  204  1e-51  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1155  two component transcriptional regulator  51.75 
 
 
235 aa  203  2e-51  Frankia sp. CcI3  Bacteria  normal  0.503115  normal 
 
 
-
 
NC_013159  Svir_32770  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  54.46 
 
 
229 aa  202  3e-51  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.599916  normal 
 
 
-
 
NC_011831  Cagg_3265  two component transcriptional regulator, winged helix family  47.09 
 
 
245 aa  202  4e-51  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.45002  normal 
 
 
-
 
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