More than 300 homologs were found in PanDaTox collection
for query gene Franean1_5506 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_5506  Crp/FNR family transcriptional regulator  100 
 
 
246 aa  484  1e-136  Frankia sp. EAN1pec  Bacteria  normal  0.324567  normal  0.438631 
 
 
-
 
NC_013131  Caci_7216  transcriptional regulator, Crp/Fnr family  46.08 
 
 
246 aa  179  4e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.726682  normal 
 
 
-
 
NC_009953  Sare_0070  cyclic nucleotide-binding protein  43.95 
 
 
227 aa  167  2e-40  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.376283 
 
 
-
 
NC_009921  Franean1_1677  cyclic nucleotide-binding protein  41.7 
 
 
258 aa  155  5.0000000000000005e-37  Frankia sp. EAN1pec  Bacteria  normal  0.506462  normal  0.511537 
 
 
-
 
NC_013093  Amir_6844  transcriptional regulator, Crp/Fnr family  39.74 
 
 
235 aa  144  1e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0901192  n/a   
 
 
-
 
NC_013093  Amir_5850  transcriptional regulator, Crp/Fnr family  41.07 
 
 
223 aa  140  1.9999999999999998e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0120826  n/a   
 
 
-
 
NC_013093  Amir_5511  transcriptional regulator, Crp/Fnr family  39.62 
 
 
227 aa  134  9.999999999999999e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.360617  n/a   
 
 
-
 
NC_013510  Tcur_1167  transcriptional regulator, Crp/Fnr family  40.55 
 
 
231 aa  129  4.0000000000000003e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0781257  n/a   
 
 
-
 
NC_013947  Snas_1232  transcriptional regulator, Crp/Fnr family  35.94 
 
 
235 aa  129  5.0000000000000004e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5851  transcriptional regulator, Crp/Fnr family  35.15 
 
 
242 aa  123  3e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0930905  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  38.83 
 
 
222 aa  122  5e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1118  transcriptional regulator, Crp/Fnr family  35.78 
 
 
240 aa  116  3e-25  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1608  putative transcriptional regulator, Crp/Fnr family  35.4 
 
 
248 aa  113  3e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6885  putative transcriptional regulator, Crp/Fnr family  37.44 
 
 
240 aa  113  4.0000000000000004e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  35.38 
 
 
223 aa  112  5e-24  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4977  transcriptional regulator, Crp/Fnr family  33.33 
 
 
234 aa  111  1.0000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.111601 
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  34.43 
 
 
223 aa  109  4.0000000000000004e-23  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  37.14 
 
 
212 aa  107  1e-22  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  34.1 
 
 
225 aa  105  5e-22  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  28.72 
 
 
225 aa  102  6e-21  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  35.68 
 
 
225 aa  95.5  7e-19  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  28.57 
 
 
234 aa  94  2e-18  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  35.14 
 
 
225 aa  93.6  2e-18  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_013510  Tcur_2257  transcriptional regulator, Crp/Fnr family  33.15 
 
 
234 aa  91.7  9e-18  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000784359  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  34.55 
 
 
225 aa  90.5  2e-17  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  30.14 
 
 
225 aa  87.8  1e-16  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013131  Caci_8335  putative transcriptional regulator, Crp/Fnr family  29.7 
 
 
209 aa  86.3  4e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.339186  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  30 
 
 
224 aa  86.3  4e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  30.57 
 
 
226 aa  84  0.000000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  25.93 
 
 
226 aa  83.6  0.000000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1853  transcriptional regulator, Crp/Fnr family  28.02 
 
 
240 aa  82.8  0.000000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  28.7 
 
 
225 aa  82  0.000000000000007  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  28.44 
 
 
234 aa  82  0.000000000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  27.32 
 
 
223 aa  82  0.000000000000009  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  31.53 
 
 
233 aa  80.9  0.00000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_008009  Acid345_1498  Crp/FNR family transcriptional regulator  26.76 
 
 
239 aa  80.9  0.00000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.163113  normal 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  28.38 
 
 
228 aa  80.5  0.00000000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  26.67 
 
 
224 aa  79.7  0.00000000000003  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.55 
 
 
225 aa  79.7  0.00000000000004  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  29.95 
 
 
251 aa  79.7  0.00000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  29.12 
 
 
222 aa  79.7  0.00000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  26.39 
 
 
224 aa  79.7  0.00000000000004  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_4286  Crp/FNR family transcriptional regulator  33.02 
 
 
241 aa  79.3  0.00000000000005  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  29.84 
 
 
228 aa  79.3  0.00000000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013159  Svir_26880  cAMP-binding protein  34.47 
 
 
225 aa  79  0.00000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.452605 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  27.31 
 
 
220 aa  78.6  0.00000000000009  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.8 
 
 
228 aa  77.8  0.0000000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  29 
 
 
232 aa  77  0.0000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  30.98 
 
 
225 aa  77  0.0000000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  28.8 
 
 
225 aa  77  0.0000000000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3455  Crp/FNR family transcriptional regulator  27.27 
 
 
237 aa  76.6  0.0000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.063385 
 
 
-
 
NC_009511  Swit_3029  CRP/FNR family transcriptional regulator  27.83 
 
 
228 aa  76.6  0.0000000000003  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  29.57 
 
 
231 aa  76.6  0.0000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_009441  Fjoh_2535  CRP/FNR family transcriptional regulator  22.51 
 
 
226 aa  76.3  0.0000000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  27.4 
 
 
226 aa  76.3  0.0000000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  31.61 
 
 
236 aa  76.3  0.0000000000005  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27.46 
 
 
226 aa  75.1  0.0000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  29 
 
 
232 aa  75.1  0.0000000000009  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  27.27 
 
 
247 aa  75.1  0.000000000001  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  28.12 
 
 
214 aa  75.1  0.000000000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.84 
 
 
242 aa  74.7  0.000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_009921  Franean1_0328  Crp/FNR family transcriptional regulator  32.42 
 
 
246 aa  75.1  0.000000000001  Frankia sp. EAN1pec  Bacteria  normal  0.0277272  normal  0.0570772 
 
 
-
 
NC_013739  Cwoe_2918  transcriptional regulator, Crp/Fnr family  31.53 
 
 
226 aa  74.7  0.000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.172063  normal  0.392966 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  26.24 
 
 
225 aa  74.7  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.51 
 
 
228 aa  74.7  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_0890  transcriptional regulator, Crp/Fnr family  27.31 
 
 
235 aa  74.3  0.000000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  27.83 
 
 
235 aa  73.9  0.000000000002  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  24.87 
 
 
352 aa  73.9  0.000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  21.96 
 
 
219 aa  73.9  0.000000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  28.95 
 
 
228 aa  73.9  0.000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_013161  Cyan8802_0916  transcriptional regulator, Crp/Fnr family  27.31 
 
 
235 aa  74.3  0.000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  0.18169  normal 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.46 
 
 
226 aa  73.2  0.000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  25.58 
 
 
231 aa  73.6  0.000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  25.56 
 
 
238 aa  73.6  0.000000000003  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  28.24 
 
 
220 aa  73.2  0.000000000004  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  28.57 
 
 
224 aa  73.2  0.000000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  23.32 
 
 
231 aa  73.2  0.000000000004  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  30.24 
 
 
239 aa  73.2  0.000000000004  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3227  CRP/FNR family transcriptional regulator  23 
 
 
232 aa  72.8  0.000000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1708  transcriptional regulator, Crp/Fnr family  26.44 
 
 
229 aa  72.4  0.000000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  25 
 
 
238 aa  72.4  0.000000000007  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  28.57 
 
 
224 aa  72  0.000000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  27.37 
 
 
226 aa  71.6  0.00000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  28.85 
 
 
224 aa  71.6  0.00000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.06 
 
 
226 aa  70.9  0.00000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  28.38 
 
 
228 aa  70.5  0.00000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  28.28 
 
 
217 aa  70.9  0.00000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0303  transcriptional regulator, Crp/Fnr family  26.6 
 
 
228 aa  70.5  0.00000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_2357  transcriptional regulator, Crp/Fnr family  25.64 
 
 
212 aa  70.5  0.00000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_0755  cAMP-regulatory protein  26.5 
 
 
211 aa  70.1  0.00000000003  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.276204 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  29.63 
 
 
224 aa  70.1  0.00000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  22.13 
 
 
236 aa  70.1  0.00000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  29.08 
 
 
224 aa  70.5  0.00000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  29.63 
 
 
224 aa  70.1  0.00000000003  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24 
 
 
232 aa  70.5  0.00000000003  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  29.63 
 
 
224 aa  70.1  0.00000000003  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  26.36 
 
 
229 aa  70.1  0.00000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  31.61 
 
 
225 aa  69.7  0.00000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_011901  Tgr7_2797  cAMP-regulatory protein  26.74 
 
 
198 aa  69.7  0.00000000004  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.207531  n/a   
 
 
-
 
NC_008347  Mmar10_2635  cyclic nucleotide-binding protein  25.12 
 
 
228 aa  69.3  0.00000000006  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
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