More than 300 homologs were found in PanDaTox collection
for query gene Franean1_3846 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_3846  two component LuxR family transcriptional regulator  100 
 
 
249 aa  484  1e-136  Frankia sp. EAN1pec  Bacteria  normal  0.525033  normal  0.770826 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  81.31 
 
 
218 aa  348  5e-95  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  72.9 
 
 
215 aa  300  1e-80  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0404  two component transcriptional regulator, LuxR family  73.83 
 
 
218 aa  299  3e-80  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0987348  normal 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  71.03 
 
 
215 aa  298  7e-80  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_013739  Cwoe_0676  two component transcriptional regulator, LuxR family  73.24 
 
 
215 aa  296  2e-79  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0607  two component transcriptional regulator, LuxR family  62.21 
 
 
216 aa  257  1e-67  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  62.91 
 
 
215 aa  253  2.0000000000000002e-66  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  62.33 
 
 
218 aa  248  5e-65  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  59.07 
 
 
232 aa  247  1e-64  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013595  Sros_7377  response regulator receiver protein  64.19 
 
 
216 aa  245  4.9999999999999997e-64  Streptosporangium roseum DSM 43021  Bacteria  normal  0.92051  normal 
 
 
-
 
NC_013093  Amir_3004  two component transcriptional regulator, LuxR family  59.73 
 
 
223 aa  242  3.9999999999999997e-63  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0522265  n/a   
 
 
-
 
NC_013947  Snas_5550  two component transcriptional regulator, LuxR family  58.77 
 
 
213 aa  237  1e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.159917  normal  0.0692801 
 
 
-
 
NC_009664  Krad_2518  two component transcriptional regulator, LuxR family  60.09 
 
 
225 aa  236  2e-61  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4001  two component transcriptional regulator, LuxR family  57.94 
 
 
217 aa  227  1e-58  Actinosynnema mirum DSM 43827  Bacteria  normal  0.380782  n/a   
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  55.61 
 
 
226 aa  227  2e-58  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013595  Sros_8800  response regulator receiver protein  56.54 
 
 
215 aa  220  1.9999999999999999e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  0.752334  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  53.77 
 
 
225 aa  218  5e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  55.71 
 
 
225 aa  218  7e-56  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  55.35 
 
 
219 aa  218  7.999999999999999e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  54.26 
 
 
247 aa  218  7.999999999999999e-56  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  54.63 
 
 
234 aa  215  5.9999999999999996e-55  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  53.42 
 
 
228 aa  213  1.9999999999999998e-54  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  52.8 
 
 
222 aa  211  1e-53  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6306  response regulator receiver protein  54.72 
 
 
209 aa  207  1e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0259699  normal  0.0492304 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  52.53 
 
 
226 aa  206  3e-52  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  53.74 
 
 
218 aa  206  3e-52  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  52.05 
 
 
225 aa  204  1e-51  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  53.95 
 
 
220 aa  204  1e-51  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  50.7 
 
 
218 aa  204  1e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50 
 
 
244 aa  203  2e-51  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  52.07 
 
 
221 aa  203  2e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  51.36 
 
 
226 aa  202  3e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  51.64 
 
 
219 aa  202  3e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  53.49 
 
 
219 aa  203  3e-51  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  51.38 
 
 
227 aa  202  4e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  53.64 
 
 
226 aa  202  4e-51  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  49.53 
 
 
224 aa  202  4e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  51.35 
 
 
220 aa  202  5e-51  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  52.25 
 
 
229 aa  202  5e-51  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  50 
 
 
217 aa  201  8e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  50.7 
 
 
215 aa  201  8e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  52.97 
 
 
227 aa  200  9.999999999999999e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  52.34 
 
 
219 aa  201  9.999999999999999e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  52.75 
 
 
221 aa  201  9.999999999999999e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  48.43 
 
 
221 aa  200  1.9999999999999998e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  48.48 
 
 
239 aa  199  5e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  51.43 
 
 
211 aa  198  7e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.77 
 
 
222 aa  198  7e-50  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  51.38 
 
 
221 aa  198  9e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  51.85 
 
 
224 aa  197  9e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  50.21 
 
 
241 aa  197  1.0000000000000001e-49  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  50.45 
 
 
228 aa  196  2.0000000000000003e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  48.42 
 
 
224 aa  196  2.0000000000000003e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  52.78 
 
 
220 aa  196  3e-49  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  50 
 
 
230 aa  196  4.0000000000000005e-49  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  49.79 
 
 
244 aa  196  4.0000000000000005e-49  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_013093  Amir_3219  two component transcriptional regulator, LuxR family  54.29 
 
 
208 aa  196  4.0000000000000005e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  52 
 
 
225 aa  195  6e-49  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  47.96 
 
 
223 aa  195  6e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  48.65 
 
 
261 aa  194  9e-49  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  47.95 
 
 
239 aa  194  1e-48  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  48.67 
 
 
231 aa  193  2e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  52.09 
 
 
215 aa  192  3e-48  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  47.71 
 
 
225 aa  192  4e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  48.88 
 
 
234 aa  192  4e-48  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  51.16 
 
 
225 aa  192  5e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_012669  Bcav_2710  two component transcriptional regulator, LuxR family  49.78 
 
 
230 aa  192  5e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.248821  normal  0.606697 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  52.78 
 
 
225 aa  191  9e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  50.45 
 
 
222 aa  191  1e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  48.17 
 
 
230 aa  190  1e-47  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.47 
 
 
222 aa  191  1e-47  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  48.37 
 
 
228 aa  191  1e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  50.68 
 
 
220 aa  191  1e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  49.07 
 
 
221 aa  191  1e-47  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  48.36 
 
 
220 aa  191  1e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  51.16 
 
 
214 aa  190  2e-47  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  49.3 
 
 
220 aa  189  2.9999999999999997e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  48.61 
 
 
224 aa  189  4e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  51.13 
 
 
223 aa  189  4e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  50.48 
 
 
213 aa  189  5e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  39.6 
 
 
261 aa  188  5.999999999999999e-47  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_013131  Caci_6529  two component transcriptional regulator, LuxR family  49.1 
 
 
224 aa  188  7e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.270807  normal  0.114568 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  52.34 
 
 
216 aa  188  8e-47  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  49.77 
 
 
241 aa  187  2e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  47.66 
 
 
218 aa  186  3e-46  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  49.07 
 
 
225 aa  186  3e-46  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  50 
 
 
216 aa  186  3e-46  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  45.21 
 
 
224 aa  186  3e-46  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  46.22 
 
 
234 aa  185  5e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  50.9 
 
 
224 aa  185  6e-46  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  49.54 
 
 
215 aa  185  7e-46  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  48.61 
 
 
225 aa  184  8e-46  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  49.33 
 
 
225 aa  184  8e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  48.65 
 
 
227 aa  184  9e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  48.83 
 
 
217 aa  184  1.0000000000000001e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  47 
 
 
219 aa  184  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  43.72 
 
 
233 aa  184  1.0000000000000001e-45  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013530  Xcel_2717  two component transcriptional regulator, LuxR family  45.05 
 
 
223 aa  183  2.0000000000000003e-45  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.54 
 
 
236 aa  183  2.0000000000000003e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
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