More than 300 homologs were found in PanDaTox collection
for query gene Francci3_2258 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_2258  two component LuxR family transcriptional regulator  100 
 
 
224 aa  439  9.999999999999999e-123  Frankia sp. CcI3  Bacteria  normal  0.124896  normal  0.0124728 
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  82.38 
 
 
211 aa  346  2e-94  Frankia sp. EAN1pec  Bacteria  normal  normal  0.265588 
 
 
-
 
NC_009921  Franean1_1971  two component LuxR family transcriptional regulator  81.55 
 
 
216 aa  325  4.0000000000000003e-88  Frankia sp. EAN1pec  Bacteria  normal  0.356635  normal  0.773651 
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  73.08 
 
 
213 aa  308  4e-83  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  71.77 
 
 
216 aa  303  2.0000000000000002e-81  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  72.25 
 
 
244 aa  303  2.0000000000000002e-81  Frankia sp. EAN1pec  Bacteria  normal  normal  0.322421 
 
 
-
 
NC_007777  Francci3_1487  two component LuxR family transcriptional regulator  69.59 
 
 
231 aa  296  2e-79  Frankia sp. CcI3  Bacteria  normal  0.0122618  normal  0.753042 
 
 
-
 
NC_009921  Franean1_4979  two component LuxR family transcriptional regulator  70.53 
 
 
231 aa  294  7e-79  Frankia sp. EAN1pec  Bacteria  normal  0.889239  normal  0.507767 
 
 
-
 
NC_009953  Sare_1528  two component LuxR family transcriptional regulator  68.45 
 
 
212 aa  282  2.0000000000000002e-75  Salinispora arenicola CNS-205  Bacteria  normal  0.212037  hitchhiker  0.000165031 
 
 
-
 
NC_009380  Strop_1577  response regulator receiver  67.48 
 
 
212 aa  280  2e-74  Salinispora tropica CNB-440  Bacteria  normal  normal  0.967001 
 
 
-
 
NC_008699  Noca_0992  regulatory protein, LuxR  64.76 
 
 
218 aa  276  2e-73  Nocardioides sp. JS614  Bacteria  normal  0.850793  n/a   
 
 
-
 
NC_013235  Namu_4738  two component transcriptional regulator, LuxR family  62.27 
 
 
233 aa  274  9e-73  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2950  LuxR response regulator receiver  62.38 
 
 
221 aa  270  1e-71  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0945  response regulator receiver  64.56 
 
 
216 aa  267  1e-70  Nocardioides sp. JS614  Bacteria  normal  0.0407172  n/a   
 
 
-
 
NC_013595  Sros_3524  response regulator receiver protein  65.15 
 
 
214 aa  265  4e-70  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0390864  normal 
 
 
-
 
NC_013510  Tcur_0500  two component transcriptional regulator, LuxR family  64.14 
 
 
226 aa  261  4.999999999999999e-69  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3505  LuxR family two component transcriptional regulator  63.64 
 
 
213 aa  261  4.999999999999999e-69  Thermobispora bispora DSM 43833  Bacteria  normal  0.345096  normal 
 
 
-
 
NC_014210  Ndas_4749  two component transcriptional regulator, LuxR family  62.14 
 
 
223 aa  251  6e-66  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0094  two component transcriptional regulator, LuxR family  60.09 
 
 
233 aa  248  4e-65  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0277195 
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  59.05 
 
 
219 aa  244  6e-64  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_008578  Acel_0518  two component LuxR family transcriptional regulator  63.94 
 
 
225 aa  242  3e-63  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.665179 
 
 
-
 
NC_013093  Amir_6098  two component transcriptional regulator, LuxR family  62.32 
 
 
218 aa  241  6e-63  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_3035  LuxR response regulator receiver  62.87 
 
 
223 aa  239  2e-62  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3097  two component transcriptional regulator, LuxR family  58.94 
 
 
222 aa  236  1e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.472018  normal  0.507317 
 
 
-
 
NC_013159  Svir_22850  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  56.94 
 
 
239 aa  236  2e-61  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.711047 
 
 
-
 
NC_013093  Amir_1910  two component transcriptional regulator, LuxR family  55.98 
 
 
218 aa  235  4e-61  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0097  two component transcriptional regulator, LuxR family  56.31 
 
 
209 aa  231  8.000000000000001e-60  Actinosynnema mirum DSM 43827  Bacteria  normal  0.142871  n/a   
 
 
-
 
NC_013235  Namu_2003  two component transcriptional regulator, LuxR family  55.39 
 
 
219 aa  231  9e-60  Nakamurella multipartita DSM 44233  Bacteria  normal  0.183245  hitchhiker  0.00373502 
 
 
-
 
NC_011886  Achl_2073  two component transcriptional regulator, LuxR family  54.63 
 
 
226 aa  229  2e-59  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000764485 
 
 
-
 
NC_009565  TBFG_13154  two component system transcriptional regulatory protein DevR  53.37 
 
 
217 aa  227  9e-59  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2136  two component LuxR family transcriptional regulator  56.93 
 
 
254 aa  226  3e-58  Arthrobacter sp. FB24  Bacteria  normal  0.0553154  n/a   
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  55.5 
 
 
223 aa  224  1e-57  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1427  two component LuxR family transcriptional regulator  53.37 
 
 
212 aa  221  9e-57  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_01100  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  55.07 
 
 
214 aa  220  9.999999999999999e-57  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4126  two component LuxR family transcriptional regulator  51.43 
 
 
220 aa  220  1.9999999999999999e-56  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4201  two component LuxR family transcriptional regulator  51.92 
 
 
215 aa  219  1.9999999999999999e-56  Mycobacterium sp. KMS  Bacteria  normal  0.180608  normal 
 
 
-
 
NC_009077  Mjls_4357  two component LuxR family transcriptional regulator  51.92 
 
 
215 aa  219  1.9999999999999999e-56  Mycobacterium sp. JLS  Bacteria  normal  normal  0.171113 
 
 
-
 
NC_014158  Tpau_4145  two component transcriptional regulator, LuxR family  57 
 
 
216 aa  216  2e-55  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2140  response regulator receiver  58.17 
 
 
218 aa  215  4e-55  Gordonia bronchialis DSM 43247  Bacteria  normal  0.95288  n/a   
 
 
-
 
NC_009338  Mflv_3847  two component LuxR family transcriptional regulator  51.2 
 
 
216 aa  215  4e-55  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.118356  decreased coverage  0.00872558 
 
 
-
 
NC_008146  Mmcs_1076  two component LuxR family transcriptional regulator  54.33 
 
 
228 aa  212  3.9999999999999995e-54  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1092  two component LuxR family transcriptional regulator  54.33 
 
 
228 aa  212  3.9999999999999995e-54  Mycobacterium sp. KMS  Bacteria  normal  0.123414  normal  0.110897 
 
 
-
 
NC_009077  Mjls_1103  two component LuxR family transcriptional regulator  54.33 
 
 
228 aa  212  3.9999999999999995e-54  Mycobacterium sp. JLS  Bacteria  normal  0.191898  normal 
 
 
-
 
NC_008726  Mvan_2548  two component LuxR family transcriptional regulator  55.02 
 
 
216 aa  204  1e-51  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.971783  normal 
 
 
-
 
NC_013757  Gobs_4820  two component transcriptional regulator, LuxR family  55.29 
 
 
218 aa  199  3e-50  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1611  two component transcriptional regulator, LuxR family  49 
 
 
208 aa  182  4.0000000000000006e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.548364  normal 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  43.72 
 
 
242 aa  176  3e-43  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_008541  Arth_3459  two component LuxR family transcriptional regulator  46.23 
 
 
212 aa  172  5e-42  Arthrobacter sp. FB24  Bacteria  normal  0.775478  n/a   
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  46.6 
 
 
219 aa  170  1e-41  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  44.88 
 
 
222 aa  166  2.9999999999999998e-40  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.764026 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  41.31 
 
 
241 aa  166  2.9999999999999998e-40  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  43.48 
 
 
220 aa  165  5e-40  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_011886  Achl_1701  response regulator receiver protein  42.72 
 
 
224 aa  165  5.9999999999999996e-40  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0169479 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  43.26 
 
 
236 aa  165  5.9999999999999996e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  43.41 
 
 
227 aa  165  6.9999999999999995e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_010571  Oter_0647  two component LuxR family transcriptional regulator  43.87 
 
 
225 aa  164  6.9999999999999995e-40  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  43.2 
 
 
218 aa  164  1.0000000000000001e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  42.13 
 
 
242 aa  162  4.0000000000000004e-39  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  41.86 
 
 
303 aa  161  6e-39  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  40.38 
 
 
221 aa  161  6e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  41.55 
 
 
220 aa  161  7e-39  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  41.35 
 
 
210 aa  161  8.000000000000001e-39  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  40.87 
 
 
210 aa  161  8.000000000000001e-39  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  40.87 
 
 
210 aa  160  1e-38  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  40.87 
 
 
210 aa  160  1e-38  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  40.87 
 
 
210 aa  160  1e-38  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  40.87 
 
 
210 aa  160  1e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  40.87 
 
 
210 aa  160  1e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  40.87 
 
 
210 aa  160  1e-38  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_009972  Haur_4485  two component LuxR family transcriptional regulator  43.41 
 
 
213 aa  160  1e-38  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.310872  n/a   
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  41.2 
 
 
242 aa  160  2e-38  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1160  two component LuxR family transcriptional regulator  40.87 
 
 
210 aa  160  2e-38  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1321  response regulator  40.87 
 
 
210 aa  159  4e-38  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  40.87 
 
 
210 aa  159  4e-38  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  42.38 
 
 
226 aa  159  4e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_010718  Nther_0692  two component transcriptional regulator, LuxR family  39.6 
 
 
213 aa  159  4e-38  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  38.68 
 
 
224 aa  159  4e-38  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  42.65 
 
 
213 aa  158  6e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  38.79 
 
 
224 aa  158  6e-38  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  41.15 
 
 
228 aa  158  7e-38  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  40.76 
 
 
253 aa  157  1e-37  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  40.19 
 
 
226 aa  157  1e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  37.98 
 
 
219 aa  156  2e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  39.32 
 
 
213 aa  156  2e-37  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  36.62 
 
 
224 aa  156  2e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  37.14 
 
 
218 aa  156  2e-37  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  44.13 
 
 
225 aa  156  2e-37  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  43.81 
 
 
220 aa  155  3e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  39.51 
 
 
217 aa  156  3e-37  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_009487  SaurJH9_1938  two component LuxR family transcriptional regulator  39.71 
 
 
209 aa  156  3e-37  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1972  response regulator receiver  39.71 
 
 
209 aa  156  3e-37  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  42.18 
 
 
223 aa  156  3e-37  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  37.5 
 
 
212 aa  155  4e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  39.81 
 
 
217 aa  155  4e-37  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1874  two component transcriptional regulator, LuxR family  43 
 
 
213 aa  155  4e-37  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  37.91 
 
 
215 aa  155  4e-37  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  42.03 
 
 
221 aa  155  5.0000000000000005e-37  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  37.91 
 
 
215 aa  155  6e-37  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  37.91 
 
 
215 aa  155  6e-37  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  37.91 
 
 
215 aa  155  6e-37  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
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