More than 300 homologs were found in PanDaTox collection
for query gene Francci3_1549 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007333  Tfu_1647  acyl-CoA dehydrogenase  81.68 
 
 
385 aa  654    Thermobifida fusca YX  Bacteria  normal  0.658516  n/a   
 
 
-
 
NC_007777  Francci3_1549  butyryl-CoA dehydrogenase  100 
 
 
387 aa  789    Frankia sp. CcI3  Bacteria  normal  0.431805  normal 
 
 
-
 
NC_014210  Ndas_4413  acyl-CoA dehydrogenase domain protein  76.44 
 
 
384 aa  622  1e-177  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_08440  acyl-CoA dehydrogenase  73.25 
 
 
389 aa  592  1e-168  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.231358  normal  0.194083 
 
 
-
 
NC_013131  Caci_4530  acyl-CoA dehydrogenase domain protein  74.29 
 
 
389 aa  585  1e-166  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.335652  normal  0.412983 
 
 
-
 
NC_009953  Sare_0876  acyl-CoA dehydrogenase domain-containing protein  70.57 
 
 
387 aa  559  1e-158  Salinispora arenicola CNS-205  Bacteria  normal  0.189497  normal  0.119821 
 
 
-
 
NC_009380  Strop_0934  acyl-CoA dehydrogenase domain-containing protein  70.76 
 
 
387 aa  560  1e-158  Salinispora tropica CNB-440  Bacteria  normal  normal  0.496704 
 
 
-
 
NC_013093  Amir_6366  acyl-CoA dehydrogenase domain protein  69.45 
 
 
387 aa  553  1e-156  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1390  acyl-CoA dehydrogenase domain-containing protein  70.13 
 
 
390 aa  553  1e-156  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1058  acyl-CoA dehydrogenase domain protein  70.42 
 
 
386 aa  549  1e-155  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.405365  n/a   
 
 
-
 
NC_009921  Franean1_2188  acyl-CoA dehydrogenase domain-containing protein  69.01 
 
 
387 aa  550  1e-155  Frankia sp. EAN1pec  Bacteria  normal  normal  0.130468 
 
 
-
 
NC_013510  Tcur_4115  acyl-CoA dehydrogenase domain protein  69.85 
 
 
390 aa  549  1e-155  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1029  acyl-CoA dehydrogenase domain protein  68.5 
 
 
387 aa  548  1e-155  Gordonia bronchialis DSM 43247  Bacteria  normal  0.239684  n/a   
 
 
-
 
NC_008699  Noca_4062  acyl-CoA dehydrogenase domain-containing protein  70.05 
 
 
389 aa  550  1e-155  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2589  acyl-CoA dehydrogenase domain protein  69.85 
 
 
390 aa  549  1e-155  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.0000683478  n/a   
 
 
-
 
NC_013159  Svir_28760  acyl-CoA dehydrogenase  68.6 
 
 
382 aa  538  9.999999999999999e-153  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.12851  normal  0.0971486 
 
 
-
 
NC_013947  Snas_6030  acyl-CoA dehydrogenase domain-containing protein  66.75 
 
 
391 aa  539  9.999999999999999e-153  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4214  acyl-CoA dehydrogenase domain protein  67.71 
 
 
386 aa  540  9.999999999999999e-153  Nakamurella multipartita DSM 44233  Bacteria  normal  0.234142  normal  0.067843 
 
 
-
 
NC_009338  Mflv_4743  butyryl-CoA dehydrogenase  69.29 
 
 
417 aa  538  9.999999999999999e-153  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4353  acyl-CoA dehydrogenase domain protein  70.18 
 
 
385 aa  535  1e-151  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1719  acyl-CoA dehydrogenase domain-containing protein  69.29 
 
 
389 aa  536  1e-151  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0714  acyl-CoA dehydrogenase domain-containing protein  69.85 
 
 
388 aa  530  1e-149  Thermobispora bispora DSM 43833  Bacteria  normal  0.114203  normal  0.0860013 
 
 
-
 
NC_013595  Sros_1345  acyl-CoA dehydrogenase, C-terminal domain protein  69.51 
 
 
387 aa  524  1e-148  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1300  acyl-CoA dehydrogenase-like protein  68.24 
 
 
388 aa  523  1e-147  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1317  acyl-CoA dehydrogenase domain-containing protein  68.24 
 
 
388 aa  523  1e-147  Mycobacterium sp. KMS  Bacteria  normal  normal  0.247959 
 
 
-
 
NC_009077  Mjls_1336  acyl-CoA dehydrogenase domain-containing protein  68.24 
 
 
388 aa  523  1e-147  Mycobacterium sp. JLS  Bacteria  normal  0.11867  normal 
 
 
-
 
NC_009565  TBFG_13303  acyl-CoA dehydrogenase fadE25  67.45 
 
 
389 aa  520  1e-146  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0409  acyl-CoA dehydrogenase domain-containing protein  65.61 
 
 
406 aa  507  9.999999999999999e-143  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1526  acyl-CoA dehydrogenase domain protein  57.11 
 
 
404 aa  412  1e-114  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.84855  n/a   
 
 
-
 
NC_013739  Cwoe_4700  acyl-CoA dehydrogenase domain protein  51.72 
 
 
384 aa  399  9.999999999999999e-111  Conexibacter woesei DSM 14684  Bacteria  normal  0.201387  normal  0.86731 
 
 
-
 
NC_012793  GWCH70_3341  acyl-CoA dehydrogenase domain protein  53.83 
 
 
379 aa  394  1e-108  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3450  acyl-CoA dehydrogenase domain protein  52.77 
 
 
380 aa  385  1e-106  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011725  BCB4264_A5464  acyl-CoA dehydrogenase  51.19 
 
 
379 aa  375  1e-103  Bacillus cereus B4264  Bacteria  unclonable  0.0000608426  n/a   
 
 
-
 
NC_011772  BCG9842_B5488  acyl-CoA dehydrogenase  50.92 
 
 
379 aa  375  1e-102  Bacillus cereus G9842  Bacteria  normal  0.270181  hitchhiker  1.62736e-22 
 
 
-
 
NC_003909  BCE_5472  acyl-CoA dehydrogenase  50.92 
 
 
379 aa  370  1e-101  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5190  acyl-CoA dehydrogenase  50.92 
 
 
379 aa  369  1e-101  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5025  butyryl-CoA dehydrogenase (short-chain acyl-CoA dehydrogenase)  50.92 
 
 
379 aa  369  1e-101  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5041  acyl-CoA dehydrogenase  50.92 
 
 
379 aa  370  1e-101  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5434  acyl-CoA dehydrogenase  50.92 
 
 
379 aa  370  1e-101  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000286159 
 
 
-
 
NC_007530  GBAA_5586  acyl-CoA dehydrogenase  50.92 
 
 
379 aa  369  1e-101  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5519  acyl-CoA dehydrogenase  50.92 
 
 
379 aa  370  1e-101  Bacillus cereus AH187  Bacteria  normal  0.814074  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5139  acyl-CoA dehydrogenase domain-containing protein  50.13 
 
 
379 aa  367  1e-100  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1546  acyl-CoA dehydrogenase domain protein  49.34 
 
 
381 aa  363  2e-99  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_1881  butyryl-CoA dehydrogenase  47.23 
 
 
379 aa  358  9.999999999999999e-98  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.593492  normal  0.222475 
 
 
-
 
NC_009674  Bcer98_3862  acyl-CoA dehydrogenase domain-containing protein  48.28 
 
 
379 aa  350  2e-95  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0585  acyl-CoA dehydrogenase domain-containing protein  47.38 
 
 
379 aa  348  1e-94  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0402  acyl-CoA dehydrogenase domain-containing protein  46.44 
 
 
380 aa  342  5e-93  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1371  butyryl-CoA dehydrogenase  47.21 
 
 
389 aa  342  5e-93  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.183303  normal 
 
 
-
 
NC_012034  Athe_1232  acyl-CoA dehydrogenase domain protein  42.86 
 
 
381 aa  341  1e-92  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1697  acyl-CoA dehydrogenase domain protein  45.69 
 
 
386 aa  340  2.9999999999999998e-92  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.0868604  normal 
 
 
-
 
NC_013171  Apre_1356  acyl-CoA dehydrogenase domain protein  46.32 
 
 
379 aa  337  1.9999999999999998e-91  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.00000000100384  n/a   
 
 
-
 
NC_008261  CPF_2584  butyryl-CoA dehydrogenase  44.59 
 
 
379 aa  336  2.9999999999999997e-91  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2286  butyryl-CoA dehydrogenase  44.59 
 
 
379 aa  336  2.9999999999999997e-91  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2695  acyl-CoA dehydrogenase domain protein  42.52 
 
 
382 aa  332  8e-90  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1076  acyl-CoA dehydrogenase, short-chain specific  44.84 
 
 
379 aa  327  2.0000000000000001e-88  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.228764 
 
 
-
 
NC_011830  Dhaf_2863  acyl-CoA dehydrogenase domain protein  46.32 
 
 
380 aa  326  4.0000000000000003e-88  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1782  butyryl-CoA dehydrogenase  45.93 
 
 
379 aa  323  3e-87  Desulfotomaculum reducens MI-1  Bacteria  normal  0.257154  n/a   
 
 
-
 
NC_011830  Dhaf_2865  acyl-CoA dehydrogenase domain protein  46.03 
 
 
389 aa  322  9.000000000000001e-87  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0136  acyl-CoA dehydrogenase domain protein  45.65 
 
 
379 aa  320  1.9999999999999998e-86  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3306  Acyl-CoA dehydrogenase-like  45.93 
 
 
380 aa  320  3e-86  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B5487  acyl-CoA dehydrogenase  43.19 
 
 
381 aa  315  8e-85  Bacillus cereus G9842  Bacteria  normal  0.0302943  hitchhiker  1.44799e-22 
 
 
-
 
NC_007517  Gmet_3307  Acyl-CoA dehydrogenase-like  44.06 
 
 
380 aa  315  9.999999999999999e-85  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6291  acyl-CoA dehydrogenase domain protein  43.54 
 
 
379 aa  315  9.999999999999999e-85  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5473  acyl-CoA dehydrogenase  42.93 
 
 
376 aa  314  1.9999999999999998e-84  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5191  acyl-CoA dehydrogenase  42.93 
 
 
376 aa  314  1.9999999999999998e-84  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5026  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  42.93 
 
 
376 aa  313  1.9999999999999998e-84  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5587  acyl-CoA dehydrogenase  42.93 
 
 
376 aa  314  1.9999999999999998e-84  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5435  acyl-CoA dehydrogenase  42.93 
 
 
376 aa  313  1.9999999999999998e-84  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000529924 
 
 
-
 
NC_011725  BCB4264_A5465  acyl-CoA dehydrogenase  42.93 
 
 
381 aa  314  1.9999999999999998e-84  Bacillus cereus B4264  Bacteria  hitchhiker  0.000680329  n/a   
 
 
-
 
NC_011658  BCAH187_A5520  acyl-CoA dehydrogenase  42.93 
 
 
381 aa  313  2.9999999999999996e-84  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3863  acyl-CoA dehydrogenase domain-containing protein  42.71 
 
 
376 aa  313  2.9999999999999996e-84  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3576  acyl-CoA dehydrogenase domain protein  44.14 
 
 
380 aa  312  4.999999999999999e-84  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_06620  butyryl-CoA dehydrogenase  45 
 
 
380 aa  312  4.999999999999999e-84  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3575  acyl-CoA dehydrogenase domain protein  44.21 
 
 
380 aa  312  6.999999999999999e-84  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5042  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  42.67 
 
 
376 aa  311  1e-83  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  44.62 
 
 
377 aa  311  2e-83  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_013730  Slin_5641  Butyryl-CoA dehydrogenase  45.24 
 
 
379 aa  311  2e-83  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_1483  butyryl-CoA dehydrogenase  41.95 
 
 
382 aa  309  4e-83  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0455  acyl-CoA dehydrogenase domain-containing protein  43.57 
 
 
380 aa  309  4e-83  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_3053  Acyl-CoA dehydrogenase  41.42 
 
 
381 aa  308  8e-83  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.75901 
 
 
-
 
NC_013739  Cwoe_1659  acyl-CoA dehydrogenase domain protein  44.71 
 
 
390 aa  308  1.0000000000000001e-82  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.487392 
 
 
-
 
NC_010184  BcerKBAB4_5140  acyl-CoA dehydrogenase domain-containing protein  42.41 
 
 
376 aa  307  2.0000000000000002e-82  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_3108  acyl-CoA dehydrogenase domain protein  44.33 
 
 
380 aa  306  3e-82  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_012793  GWCH70_3342  acyl-CoA dehydrogenase domain protein  41.99 
 
 
379 aa  305  7e-82  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0656  acyl-CoA dehydrogenase domain-containing protein  41.62 
 
 
380 aa  304  2.0000000000000002e-81  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0298  acyl-CoA dehydrogenase domain protein  41.69 
 
 
381 aa  303  3.0000000000000004e-81  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2439  acyl-CoA dehydrogenase domain protein  41.91 
 
 
380 aa  303  3.0000000000000004e-81  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_1490  butyryl-CoA dehydrogenase  43.27 
 
 
378 aa  303  4.0000000000000003e-81  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1843  acyl-CoA dehydrogenase domain protein  42.18 
 
 
380 aa  303  4.0000000000000003e-81  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3365  acyl-CoA dehydrogenase domain protein  42.37 
 
 
381 aa  303  5.000000000000001e-81  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.122497 
 
 
-
 
NC_013202  Hmuk_2068  acyl-CoA dehydrogenase domain protein  41.36 
 
 
385 aa  302  7.000000000000001e-81  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_007643  Rru_A1835  butyryl-CoA dehydrogenase  44.44 
 
 
379 aa  302  8.000000000000001e-81  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.571593  n/a   
 
 
-
 
NC_013037  Dfer_3822  acyl-CoA dehydrogenase domain protein  46.03 
 
 
379 aa  301  1e-80  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.962066  normal  0.565208 
 
 
-
 
NC_012029  Hlac_1318  acyl-CoA dehydrogenase domain protein  42.06 
 
 
384 aa  301  2e-80  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal  0.0793911 
 
 
-
 
NC_009523  RoseRS_0319  acyl-CoA dehydrogenase domain-containing protein  42.67 
 
 
383 aa  300  2e-80  Roseiflexus sp. RS-1  Bacteria  normal  0.339666  normal  0.0442463 
 
 
-
 
NC_009767  Rcas_1109  acyl-CoA dehydrogenase domain-containing protein  43.54 
 
 
388 aa  300  3e-80  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.168915  normal 
 
 
-
 
NC_013922  Nmag_3108  acyl-CoA dehydrogenase domain protein  41.01 
 
 
383 aa  300  3e-80  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_012918  GM21_1381  Butyryl-CoA dehydrogenase  41.95 
 
 
379 aa  300  3e-80  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2832  acyl-CoA dehydrogenase domain protein  41.69 
 
 
379 aa  299  5e-80  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0081  acyl-CoA dehydrogenase domain protein  44.18 
 
 
642 aa  299  7e-80  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
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