More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0089 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0089  response regulator receiver protein  100 
 
 
171 aa  338  2e-92  Frankia sp. CcI3  Bacteria  normal  0.68554  normal 
 
 
-
 
NC_009921  Franean1_7218  winged helix family two component response transcriptional regulator  62.5 
 
 
124 aa  120  7e-27  Frankia sp. EAN1pec  Bacteria  normal  0.18436  normal 
 
 
-
 
NC_013159  Svir_37670  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  45.45 
 
 
256 aa  87.8  7e-17  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.0528352 
 
 
-
 
NC_014151  Cfla_3090  putative two component transcriptional regulator, winged helix family  48.91 
 
 
241 aa  87.4  9e-17  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  1.21276e-05 
 
 
-
 
NC_011886  Achl_2724  putative two component transcriptional regulator, winged helix family  45.65 
 
 
232 aa  86.7  1e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00387379 
 
 
-
 
NC_008541  Arth_3012  response regulator receiver protein  45.65 
 
 
232 aa  86.7  1e-16  Arthrobacter sp. FB24  Bacteria  normal  0.721979  n/a   
 
 
-
 
NC_013530  Xcel_3035  putative two component transcriptional regulator, winged helix family  47.83 
 
 
243 aa  86.7  1e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0879  putative two component transcriptional regulator, winged helix family  48.91 
 
 
259 aa  87  1e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.249855  hitchhiker  0.00478466 
 
 
-
 
NC_008699  Noca_4240  transcriptional regulator domain-containing protein  48.91 
 
 
257 aa  87  1e-16  Nocardioides sp. JS614  Bacteria  normal  0.466466  n/a   
 
 
-
 
NC_014165  Tbis_2331  putative winged helix family two component transcriptional regulator  50 
 
 
166 aa  85.9  2e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.836335 
 
 
-
 
NC_013124  Afer_0241  putative two component transcriptional regulator, winged helix family  50 
 
 
217 aa  85.5  3e-16  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0453  putative winged helix family two component transcriptional regulator  42.34 
 
 
251 aa  85.9  3e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.190844  normal  0.275136 
 
 
-
 
NC_009921  Franean1_6176  winged helix family two component response transcriptional regulator  47.78 
 
 
247 aa  85.1  4e-16  Frankia sp. EAN1pec  Bacteria  normal  normal  0.186762 
 
 
-
 
NC_007777  Francci3_0443  response regulator receiver protein  47.78 
 
 
250 aa  85.1  4e-16  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4376  putative two component transcriptional regulator, winged helix family  44.57 
 
 
255 aa  85.1  4e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6372  putative two component transcriptional regulator, winged helix family  42.4 
 
 
236 aa  84.7  5e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_04930  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  45.74 
 
 
249 aa  84.3  7e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.793732  normal 
 
 
-
 
NC_007333  Tfu_2737  transcriptional regulatory protein  45.56 
 
 
253 aa  84.3  7e-16  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3419  putative two component transcriptional regulator, winged helix family  45.74 
 
 
240 aa  83.6  1e-15  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4983  putative two component transcriptional regulator, winged helix family  45.65 
 
 
232 aa  83.6  1e-15  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0895  response regulator receiver protein  37.41 
 
 
237 aa  83.2  2e-15  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1194  putative response regulator  44 
 
 
266 aa  83.2  2e-15  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0337  winged helix family two component response transcriptional regulator  40.91 
 
 
239 aa  82.4  3e-15  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0279779 
 
 
-
 
NC_013169  Ksed_03550  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.31 
 
 
261 aa  82.4  3e-15  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.329191  normal 
 
 
-
 
NC_009380  Strop_0293  winged helix family two component response transcriptional regulator  40.71 
 
 
239 aa  82  4e-15  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0439  putative two component transcriptional regulator, winged helix family  44.68 
 
 
248 aa  81.6  4e-15  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.190602 
 
 
-
 
NC_013757  Gobs_4646  putative two component transcriptional regulator, winged helix family  40.83 
 
 
249 aa  81.6  4e-15  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0595  putative two component transcriptional regulator, winged helix family  44.57 
 
 
237 aa  81.6  5e-15  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6823  putative two component transcriptional regulator, winged helix family  44.9 
 
 
250 aa  81.3  6e-15  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3545  putative two component transcriptional regulator, winged helix family  40.15 
 
 
243 aa  80.9  8e-15  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.61486  n/a   
 
 
-
 
NC_008578  Acel_2025  response regulator receiver protein  44.44 
 
 
261 aa  80.5  1e-14  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_1650  response regulator receiver protein  39.1 
 
 
278 aa  79.7  2e-14  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0110992  normal 
 
 
-
 
NC_009565  TBFG_10833  transcriptional regulatory protein  46.81 
 
 
255 aa  79.7  2e-14  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00597919 
 
 
-
 
NC_013131  Caci_8253  putative two component transcriptional regulator, winged helix family  44.44 
 
 
264 aa  79  3e-14  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4908  response regulator receiver protein  45.74 
 
 
257 aa  78.6  4e-14  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4612  response regulator receiver protein  45.74 
 
 
257 aa  78.6  4e-14  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4525  response regulator receiver protein  45.74 
 
 
257 aa  78.6  4e-14  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  50 
 
 
227 aa  78.2  5e-14  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_008726  Mvan_5097  response regulator receiver protein  37.31 
 
 
267 aa  77.4  8e-14  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET1126  transcriptional regulator  43.96 
 
 
223 aa  77  1e-13  Dehalococcoides ethenogenes 195  Bacteria  decreased coverage  2.89398e-05  n/a   
 
 
-
 
NC_013721  HMPREF0424_0189  transcriptional regulatory protein, C-terminal domain protein  41.05 
 
 
296 aa  76.6  1e-13  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013552  DhcVS_944  transcriptional regulator  43.96 
 
 
223 aa  76.6  2e-13  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12898  transcriptional regulator  46.43 
 
 
252 aa  75.9  2e-13  Mycobacterium tuberculosis F11  Bacteria  normal  0.385025  normal 
 
 
-
 
NC_013204  Elen_2015  putative two component transcriptional regulator, winged helix family  50 
 
 
224 aa  76.6  2e-13  Eggerthella lenta DSM 2243  Bacteria  normal  0.0839248  hitchhiker  1.88648e-14 
 
 
-
 
NC_014210  Ndas_4549  two component transcriptional regulator, winged helix family  46.74 
 
 
221 aa  76.3  2e-13  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.703481  normal 
 
 
-
 
NC_013441  Gbro_3935  transcriptional regulator domain protein  43.82 
 
 
270 aa  75.9  2e-13  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0440  two component transcriptional regulator, winged helix family  44.21 
 
 
230 aa  74.7  5e-13  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0955  two component transcriptional regulator  42.86 
 
 
223 aa  75.1  5e-13  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0432  putative two component transcriptional regulator, winged helix family  41.05 
 
 
224 aa  74.7  5e-13  Atopobium parvulum DSM 20469  Bacteria  hitchhiker  0.000490664  normal 
 
 
-
 
NC_013757  Gobs_4693  two component transcriptional regulator, winged helix family  36.96 
 
 
220 aa  74.3  7e-13  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0439  two component transcriptional regulator, winged helix family  44.21 
 
 
230 aa  73.9  9e-13  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_08240  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  43.01 
 
 
236 aa  73.6  1e-12  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.956318  normal  0.778898 
 
 
-
 
NC_009664  Krad_2802  two component transcriptional regulator, winged helix family  50 
 
 
220 aa  72.8  2e-12  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.232869  normal 
 
 
-
 
NC_013159  Svir_31270  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  45.36 
 
 
221 aa  72.8  2e-12  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.014564  normal  0.249814 
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  43.62 
 
 
230 aa  72.8  2e-12  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  36.49 
 
 
234 aa  72.4  3e-12  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_009921  Franean1_5704  two component transcriptional regulator  47.31 
 
 
220 aa  72.4  3e-12  Frankia sp. EAN1pec  Bacteria  normal  0.0158381  normal 
 
 
-
 
NC_013165  Shel_19870  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  49.35 
 
 
224 aa  72.4  3e-12  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.931606  normal 
 
 
-
 
NC_009632  SaurJH1_1505  response regulator receiver  29.34 
 
 
219 aa  71.6  5e-12  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.404603  n/a   
 
 
-
 
NC_009487  SaurJH9_1476  two component transcriptional regulator  29.34 
 
 
219 aa  71.6  5e-12  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1389  putative two component transcriptional regulator, winged helix family  47.12 
 
 
171 aa  70.9  7e-12  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.287988  hitchhiker  0.00961108 
 
 
-
 
NC_009831  Ssed_3303  two component transcriptional regulator  42.42 
 
 
229 aa  70.9  8e-12  Shewanella sediminis HAW-EB3  Bacteria  unclonable  7.02519e-08  hitchhiker  1.06408e-06 
 
 
-
 
NC_010816  BLD_0042  response regulator  40.82 
 
 
240 aa  70.9  8e-12  Bifidobacterium longum DJO10A  Bacteria  normal  0.382747  n/a   
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  41.18 
 
 
231 aa  70.9  8e-12  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3167  two component transcriptional regulator, winged helix family  42.45 
 
 
218 aa  70.9  9e-12  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.436774  normal  0.0676898 
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  41.94 
 
 
235 aa  70.9  9e-12  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  42.42 
 
 
230 aa  70.1  1e-11  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_010803  Clim_0772  two component transcriptional regulator, winged helix family  40.57 
 
 
233 aa  70.5  1e-11  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6843  putative two component transcriptional regulator, winged helix family  33.99 
 
 
258 aa  70.1  1e-11  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_21520  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  50.62 
 
 
222 aa  69.7  2e-11  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0794896  hitchhiker  6.30157e-05 
 
 
-
 
NC_007963  Csal_3253  two component transcriptional regulator  37.25 
 
 
229 aa  69.3  2e-11  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3452  two component transcriptional regulator  41.41 
 
 
229 aa  69.7  2e-11  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00686704  hitchhiker  0.000158375 
 
 
-
 
NC_014212  Mesil_0841  two component transcriptional regulator, winged helix family  46.88 
 
 
223 aa  69.7  2e-11  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1539  two component transcriptional regulator, winged helix family  47.67 
 
 
222 aa  69.3  2e-11  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  2.87281e-05  normal  0.103291 
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  41.49 
 
 
227 aa  68.9  3e-11  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  45.37 
 
 
231 aa  69.3  3e-11  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_007348  Reut_B4049  response regulator receiver:transcriptional regulatory protein, C-terminal  42.55 
 
 
231 aa  68.9  3e-11  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0632  two component transcriptional regulator  40.59 
 
 
236 aa  68.9  3e-11  Chlorobium luteolum DSM 273  Bacteria  normal  0.883969  normal 
 
 
-
 
NC_011886  Achl_2869  two component transcriptional regulator, winged helix family  42.55 
 
 
232 aa  69.3  3e-11  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009092  Shew_2749  two component transcriptional regulator  41.41 
 
 
241 aa  68.9  3e-11  Shewanella loihica PV-4  Bacteria  decreased coverage  5.93879e-06  unclonable  3.30773e-06 
 
 
-
 
NC_013521  Sked_04480  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  39.66 
 
 
232 aa  68.6  4e-11  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.226813 
 
 
-
 
NC_007333  Tfu_1501  response regulator  39.6 
 
 
206 aa  68.6  4e-11  Thermobifida fusca YX  Bacteria  normal  0.117784  n/a   
 
 
-
 
NC_007492  Pfl01_5606  two component transcriptional regulator  38.38 
 
 
229 aa  68.6  4e-11  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0827  two component transcriptional regulator  45.74 
 
 
256 aa  68.6  4e-11  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00211389  normal  0.244563 
 
 
-
 
NC_002947  PP_5320  winged helix family two component transcriptional regulator  37.37 
 
 
242 aa  68.2  5e-11  Pseudomonas putida KT2440  Bacteria  normal  normal  0.023746 
 
 
-
 
NC_008025  Dgeo_0087  two component transcriptional regulator  45.36 
 
 
222 aa  68.2  5e-11  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1208  phosphate regulon response regulator PhoB  40.43 
 
 
233 aa  68.2  6e-11  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0154  two component transcriptional regulator  37.37 
 
 
229 aa  67.8  7e-11  Pseudomonas putida W619  Bacteria  normal  normal  0.596099 
 
 
-
 
NC_009439  Pmen_4408  two component transcriptional regulator  37.37 
 
 
229 aa  67.4  8e-11  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0897949 
 
 
-
 
NC_013061  Phep_0367  response regulator receiver  37.65 
 
 
233 aa  67.8  8e-11  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5367  two component transcriptional regulator  37.37 
 
 
229 aa  67.8  8e-11  Pseudomonas putida GB-1  Bacteria  normal  normal  0.400776 
 
 
-
 
NC_009512  Pput_5228  two component transcriptional regulator  37.37 
 
 
229 aa  67.8  8e-11  Pseudomonas putida F1  Bacteria  normal  0.661336  normal  0.450139 
 
 
-
 
NC_013411  GYMC61_3538  two component transcriptional regulator, winged helix family  34.78 
 
 
237 aa  67.8  8e-11  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007333  Tfu_1330  response regulator receiver  46.05 
 
 
219 aa  67.8  8e-11  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5032  response regulator receiver:transcriptional regulatory protein, C-terminal  37.37 
 
 
229 aa  67.8  8e-11  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.330128 
 
 
-
 
NC_007514  Cag_0435  two component transcriptional regulator  39.18 
 
 
253 aa  67.4  9e-11  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.583358  n/a   
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  39.62 
 
 
229 aa  66.6  1e-10  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_013947  Snas_4900  two component transcriptional regulator, winged helix family  48.72 
 
 
221 aa  67  1e-10  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.196174  normal 
 
 
-
 
NC_012793  GWCH70_3409  two component transcriptional regulator, winged helix family  43.82 
 
 
236 aa  67  1e-10  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3815  two component transcriptional regulator, winged helix family  50 
 
 
225 aa  67  1e-10  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0278114  normal  0.0118387 
 
 
-
 
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