15 homologs were found in PanDaTox collection
for query gene EcolC_0084 on replicon NC_010468
Organism: Escherichia coli ATCC 8739



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010468  EcolC_0084  lipopolysaccharide core biosynthesis protein  100 
 
 
230 aa  464  9.999999999999999e-131  Escherichia coli ATCC 8739  Bacteria  normal  0.587273  normal  0.0144174 
 
 
-
 
NC_009800  EcHS_A3836  lipopolysaccharide core biosynthesis protein  99.13 
 
 
230 aa  461  1e-129  Escherichia coli HS  Bacteria  hitchhiker  0.00000107389  n/a   
 
 
-
 
NC_009801  EcE24377A_4128  lipopolysaccharide core biosynthesis protein  99.13 
 
 
230 aa  461  1e-129  Escherichia coli E24377A  Bacteria  normal  0.150359  n/a   
 
 
-
 
NC_012892  B21_03433  hypothetical protein  99.13 
 
 
230 aa  462  1e-129  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3962  lipopolysaccharide core biosynthesis protein  98.7 
 
 
230 aa  459  9.999999999999999e-129  Escherichia coli SMS-3-5  Bacteria  normal  0.0815818  normal 
 
 
-
 
NC_010658  SbBS512_E4052  lipopolysaccharide core biosynthesis protein  98.26 
 
 
230 aa  454  1e-127  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03482  WaaY protein, involved in phospohrylation of core oligosaccharide heptose  98.35 
 
 
182 aa  368  1e-101  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0080  lipopolysaccharide core biosynthesis protein  52.17 
 
 
232 aa  258  5.0000000000000005e-68  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4103  lipopolysaccharide core biosynthesis protein  51.97 
 
 
232 aa  253  1.0000000000000001e-66  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.0268948  normal 
 
 
-
 
NC_011083  SeHA_C4041  lipopolysaccharide core biosynthesis protein  51.53 
 
 
232 aa  251  5.000000000000001e-66  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.763682  normal 
 
 
-
 
NC_011094  SeSA_A3915  lipopolysaccharide core biosynthesis protein  51.53 
 
 
232 aa  251  5.000000000000001e-66  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.852659  hitchhiker  0.00982926 
 
 
-
 
NC_011149  SeAg_B3934  lipopolysaccharide core biosynthesis protein  51.53 
 
 
232 aa  251  5.000000000000001e-66  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3996  lipopolysaccharide core biosynthesis protein  51.53 
 
 
232 aa  251  7e-66  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.829287  normal 
 
 
-
 
NC_011353  ECH74115_4998  lipopolysaccharide core biosynthesis protein  57.45 
 
 
168 aa  173  1.9999999999999998e-42  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0418817  normal 
 
 
-
 
NC_011672  PHATRDRAFT_10723  predicted protein  33.33 
 
 
400 aa  44.7  0.001  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
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