More than 300 homologs were found in PanDaTox collection
for query gene EcSMS35_0032 on replicon NC_010498
Organism: Escherichia coli SMS-3-5



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_2504  carbamoyl phosphate synthase small subunit  79.84 
 
 
381 aa  634  Shewanella amazonensis SB2B  Bacteria  normal  0.323519  normal 
 
 
-
 
NC_010658  SbBS512_E0036  carbamoyl phosphate synthase small subunit  99.48 
 
 
382 aa  789  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0070  carbamoyl phosphate synthase small subunit  94.24 
 
 
382 aa  758  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  79.64 
 
 
416 aa  650  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011083  SeHA_C0070  carbamoyl phosphate synthase small subunit  94.37 
 
 
391 aa  775  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0074  carbamoyl phosphate synthase small subunit  94.76 
 
 
382 aa  761  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B0073  carbamoyl phosphate synthase small subunit  94.5 
 
 
382 aa  759  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0072  carbamoyl phosphate synthase small subunit  93.98 
 
 
382 aa  756  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.399436  normal  0.955538 
 
 
-
 
NC_011312  VSAL_I0585  carbamoyl phosphate synthase small subunit  80.42 
 
 
384 aa  654  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0152244  n/a   
 
 
-
 
NC_010498  EcSMS35_0032  carbamoyl phosphate synthase small subunit  100 
 
 
391 aa  811  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3623  carbamoyl phosphate synthase small subunit  99.21 
 
 
382 aa  787  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.314254 
 
 
-
 
NC_009436  Ent638_0591  carbamoyl phosphate synthase small subunit  91.88 
 
 
382 aa  739  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  82.45 
 
 
379 aa  659  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_009708  YpsIP31758_3454  carbamoyl phosphate synthase small subunit  86.35 
 
 
391 aa  675  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0035  carbamoyl phosphate synthase small subunit  99.48 
 
 
382 aa  789  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0033  carbamoyl phosphate synthase small subunit  99.48 
 
 
382 aa  789  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_0713  carbamoyl phosphate synthase small subunit  88.22 
 
 
382 aa  687  Serratia proteamaculans 568  Bacteria  normal  normal  0.123455 
 
 
-
 
NC_010159  YpAngola_A0784  carbamoyl phosphate synthase small subunit  86.35 
 
 
391 aa  675  Yersinia pestis Angola  Bacteria  normal  0.594963  normal  0.491126 
 
 
-
 
NC_010465  YPK_3583  carbamoyl phosphate synthase small subunit  86.35 
 
 
391 aa  674  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0035  carbamoyl phosphate synthase small subunit  99.48 
 
 
382 aa  789  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0554  carbamoyl-phosphate synthase, small subunit  87.11 
 
 
381 aa  677  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3648  carbamoyl phosphate synthase small subunit  86.13 
 
 
382 aa  692  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.48497  n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  81.87 
 
 
379 aa  654  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3841  carbamoyl phosphate synthase small subunit  85.34 
 
 
382 aa  671  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00035  hypothetical protein  99.48 
 
 
382 aa  789  Escherichia coli BL21  Bacteria  normal  0.457385  n/a   
 
 
-
 
NC_012880  Dd703_0592  carbamoyl-phosphate synthase, small subunit  86.91 
 
 
382 aa  678  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3567  carbamoyl-phosphate synthase, small subunit  99.48 
 
 
382 aa  789  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00036  carbamoyl-phosphate synthase small subunit  99.48 
 
 
382 aa  789  Escherichia coli BL21(DE3)  Bacteria  normal  0.53844  n/a   
 
 
-
 
NC_008709  Ping_0896  carbamoyl-phosphate synthase, small subunit  78.19 
 
 
378 aa  627  1e-178  Psychromonas ingrahamii 37  Bacteria  normal  0.348294  normal  0.560722 
 
 
-
 
NC_010506  Swoo_3578  carbamoyl phosphate synthase small subunit  77.23 
 
 
381 aa  617  1e-176  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0674639  normal  0.11278 
 
 
-
 
NC_009438  Sputcn32_2940  carbamoyl phosphate synthase small subunit  75.65 
 
 
386 aa  615  1e-175  Shewanella putrefaciens CN-32  Bacteria  normal  0.185194  n/a   
 
 
-
 
NC_009997  Sbal195_3526  carbamoyl phosphate synthase small subunit  77.2 
 
 
386 aa  617  1e-175  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3404  carbamoyl phosphate synthase small subunit  76.94 
 
 
385 aa  617  1e-175  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  7.86314e-05 
 
 
-
 
NC_008322  Shewmr7_1003  carbamoyl phosphate synthase small subunit  76.94 
 
 
386 aa  614  1e-175  Shewanella sp. MR-7  Bacteria  normal  0.0354323  normal 
 
 
-
 
NC_004347  SO_1141  carbamoyl phosphate synthase small subunit  75.65 
 
 
386 aa  615  1e-175  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_0967  carbamoyl phosphate synthase small subunit  76.68 
 
 
386 aa  613  1e-174  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00370508  normal 
 
 
-
 
NC_009901  Spea_3075  carbamoyl phosphate synthase small subunit  78.01 
 
 
381 aa  612  1e-174  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0335125  n/a   
 
 
-
 
NC_008345  Sfri_0975  carbamoyl phosphate synthase small subunit  77.75 
 
 
381 aa  613  1e-174  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00141878  n/a   
 
 
-
 
NC_008321  Shewmr4_0965  carbamoyl phosphate synthase small subunit  76.68 
 
 
386 aa  612  1e-174  Shewanella sp. MR-4  Bacteria  normal  0.0738044  normal 
 
 
-
 
NC_009665  Shew185_3401  carbamoyl phosphate synthase small subunit  76.42 
 
 
391 aa  608  1e-173  Shewanella baltica OS185  Bacteria  hitchhiker  0.00720177  n/a   
 
 
-
 
NC_011663  Sbal223_1051  carbamoyl phosphate synthase small subunit  76.96 
 
 
387 aa  608  1e-173  Shewanella baltica OS223  Bacteria  normal  0.098868  hitchhiker  1.7806e-06 
 
 
-
 
NC_009092  Shew_2839  carbamoyl phosphate synthase small subunit  77.66 
 
 
390 aa  610  1e-173  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00340084  normal  0.0286195 
 
 
-
 
NC_009052  Sbal_3305  carbamoyl phosphate synthase small subunit  76.42 
 
 
386 aa  609  1e-173  Shewanella baltica OS155  Bacteria  normal  0.314757  n/a   
 
 
-
 
NC_007954  Sden_0995  carbamoyl phosphate synthase small subunit  76.18 
 
 
381 aa  601  1e-171  Shewanella denitrificans OS217  Bacteria  normal  0.055995  n/a   
 
 
-
 
NC_003910  CPS_3459  carbamoyl phosphate synthase small subunit  75.92 
 
 
383 aa  603  1e-171  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  74.15 
 
 
381 aa  593  1e-168  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_011138  MADE_02244  carbamoyl-phosphate synthase small subunit  71.88 
 
 
440 aa  587  1e-166  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0231375  n/a   
 
 
-
 
NC_007984  BCI_0559  carbamoyl-phosphate synthase, small subunit  70.63 
 
 
381 aa  568  1e-161  Baumannia cicadellinicola str. Hc (Homalodisca coagulata)  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4035  carbamoyl phosphate synthase small subunit  72.37 
 
 
396 aa  566  1e-160  Marinomonas sp. MWYL1  Bacteria  normal  0.311643  normal 
 
 
-
 
NC_008740  Maqu_3359  carbamoyl-phosphate synthase, small subunit  71.2 
 
 
381 aa  564  1e-160  Marinobacter aquaeolei VT8  Bacteria  normal  0.365692  n/a   
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  71.16 
 
 
379 aa  558  1e-158  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_62930  carbamoyl phosphate synthase small subunit  70.9 
 
 
378 aa  559  1e-158  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5478  carbamoyl phosphate synthase small subunit  70.37 
 
 
378 aa  556  1e-157  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2729  carbamoyl-phosphate synthase small subunit  68.72 
 
 
387 aa  557  1e-157  Saccharophagus degradans 2-40  Bacteria  normal  0.422158  normal 
 
 
-
 
NC_012560  Avin_42940  carbamoyl phosphate synthase small subunit  69.66 
 
 
378 aa  553  1e-156  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_3086  carbamoyl-phosphate synthase small subunit  67.8 
 
 
381 aa  553  1e-156  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0580438  n/a   
 
 
-
 
NC_009512  Pput_4590  carbamoyl phosphate synthase small subunit  69.29 
 
 
386 aa  548  1e-155  Pseudomonas putida F1  Bacteria  normal  normal  0.740896 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  71.51 
 
 
385 aa  549  1e-155  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_010501  PputW619_0708  carbamoyl phosphate synthase small subunit  69.82 
 
 
386 aa  548  1e-155  Pseudomonas putida W619  Bacteria  normal  0.44923  normal  0.0111499 
 
 
-
 
NC_007005  Psyr_4192  carbamoyl phosphate synthase small subunit  70.45 
 
 
378 aa  549  1e-155  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0766  carbamoyl phosphate synthase small subunit  69.09 
 
 
386 aa  550  1e-155  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.00373051  normal  0.380766 
 
 
-
 
NC_002947  PP_4724  carbamoyl phosphate synthase small subunit  69.58 
 
 
378 aa  548  1e-155  Pseudomonas putida KT2440  Bacteria  normal  0.103863  hitchhiker  0.00276318 
 
 
-
 
NC_010322  PputGB1_4725  carbamoyl phosphate synthase small subunit  69.31 
 
 
378 aa  546  1e-154  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4502  carbamoyl-phosphate synthase, small subunit  69.39 
 
 
378 aa  546  1e-154  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.723109  n/a   
 
 
-
 
NC_009439  Pmen_3621  carbamoyl phosphate synthase small subunit  69.5 
 
 
382 aa  547  1e-154  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0878  carbamoyl-phosphate synthase, small subunit  69.13 
 
 
378 aa  543  1e-153  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0778  carbamoyl-phosphate synthase small subunit  67.47 
 
 
376 aa  524  1e-148  Methylobacillus flagellatus KT  Bacteria  normal  0.42563  hitchhiker  0.000147727 
 
 
-
 
NC_011662  Tmz1t_1731  carbamoyl phosphate synthase small subunit  69.79 
 
 
380 aa  525  1e-148  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2036  carbamoyl phosphate synthase small subunit  66.4 
 
 
378 aa  522  1e-147  Ralstonia pickettii 12J  Bacteria  normal  0.534876  normal 
 
 
-
 
NC_002977  MCA1853  carbamoyl phosphate synthase small subunit  65.6 
 
 
378 aa  521  1e-147  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0936768  n/a   
 
 
-
 
NC_013422  Hneap_1563  carbamoyl-phosphate synthase, small subunit  68.21 
 
 
377 aa  523  1e-147  Halothiobacillus neapolitanus c2  Bacteria  normal  0.878317  n/a   
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  65.69 
 
 
377 aa  518  1e-146  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
NC_003295  RSc1519  carbamoyl phosphate synthase small subunit  65.96 
 
 
378 aa  518  1e-146  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1728  carbamoyl phosphate synthase small subunit  66.13 
 
 
378 aa  520  1e-146  Ralstonia pickettii 12D  Bacteria  normal  0.590257  normal  0.961099 
 
 
-
 
NC_007347  Reut_A2177  carbamoyl phosphate synthase small subunit  66.22 
 
 
378 aa  513  1e-144  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0830  carbamoyl phosphate synthase small subunit  64.23 
 
 
410 aa  514  1e-144  Psychrobacter cryohalolentis K5  Bacteria  normal  0.915619  normal 
 
 
-
 
NC_011071  Smal_1811  carbamoyl phosphate synthase small subunit  64.74 
 
 
393 aa  512  1e-144  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0542874 
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  64.63 
 
 
386 aa  511  1e-144  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_007510  Bcep18194_A4432  carbamoyl phosphate synthase small subunit  65.52 
 
 
380 aa  512  1e-144  Burkholderia sp. 383  Bacteria  hitchhiker  0.00120805  normal 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  65.26 
 
 
401 aa  511  1e-144  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  65.35 
 
 
393 aa  511  1e-143  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_007973  Rmet_2195  carbamoyl phosphate synthase small subunit  66.14 
 
 
382 aa  509  1e-143  Cupriavidus metallidurans CH34  Bacteria  normal  0.0764461  normal  0.137113 
 
 
-
 
NC_008542  Bcen2424_1290  carbamoyl phosphate synthase small subunit  64.99 
 
 
380 aa  504  1e-142  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0948613  n/a   
 
 
-
 
NC_007404  Tbd_1127  carbamoyl-phosphate synthase small subunit  66.4 
 
 
379 aa  507  1e-142  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.390679  normal 
 
 
-
 
NC_010508  Bcenmc03_1261  carbamoyl phosphate synthase small subunit  65.25 
 
 
380 aa  507  1e-142  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0131767  normal  0.191599 
 
 
-
 
NC_008060  Bcen_0809  carbamoyl phosphate synthase small subunit  64.99 
 
 
380 aa  504  1e-142  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0478  carbamoyl-phosphate synthase, small subunit  65 
 
 
383 aa  504  1e-142  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2823  carbamoyl-phosphate synthase, small subunit  63.9 
 
 
394 aa  501  1e-141  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007434  BURPS1710b_1608  carbamoyl phosphate synthase small subunit  64.15 
 
 
381 aa  501  1e-141  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0815  carbamoyl phosphate synthase small subunit  62.97 
 
 
410 aa  503  1e-141  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.0593166 
 
 
-
 
NC_007484  Noc_2573  carbamoyl-phosphate synthase, small subunit  67.2 
 
 
381 aa  503  1e-141  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.219854  n/a   
 
 
-
 
NC_009524  PsycPRwf_0834  carbamoyl phosphate synthase small subunit  62.34 
 
 
418 aa  501  1e-140  Psychrobacter sp. PRwf-1  Bacteria  normal  0.0896746  normal 
 
 
-
 
NC_008785  BMASAVP1_A1281  carbamoyl phosphate synthase small subunit  64.15 
 
 
381 aa  500  1e-140  Burkholderia mallei SAVP1  Bacteria  normal  0.697849  n/a   
 
 
-
 
NC_006348  BMA0770  carbamoyl phosphate synthase small subunit  64.15 
 
 
381 aa  500  1e-140  Burkholderia mallei ATCC 23344  Bacteria  normal  0.76287  n/a   
 
 
-
 
NC_012791  Vapar_2615  carbamoyl phosphate synthase small subunit  64.47 
 
 
389 aa  499  1e-140  Variovorax paradoxus S110  Bacteria  normal  0.218889  n/a   
 
 
-
 
NC_008825  Mpe_A1261  carbamoyl-phosphate synthase small subunit  65.23 
 
 
383 aa  498  1e-140  Methylibium petroleiphilum PM1  Bacteria  normal  decreased coverage  0.00672288 
 
 
-
 
NC_008836  BMA10229_A0587  carbamoyl phosphate synthase small subunit  64.15 
 
 
381 aa  500  1e-140  Burkholderia mallei NCTC 10229  Bacteria  normal  0.368687  n/a   
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  62.53 
 
 
397 aa  501  1e-140  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1475  carbamoyl phosphate synthase small subunit  63.88 
 
 
381 aa  499  1e-140  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1505  carbamoyl phosphate synthase small subunit  64.15 
 
 
381 aa  501  1e-140  Burkholderia pseudomallei 1106a  Bacteria  normal  0.188244  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>