62 homologs were found in PanDaTox collection
for query gene EcDH1_1098 on replicon CP001637
Organism: Escherichia coli DH1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001637  EcDH1_1098  positive regulator of sigma E, RseC/MucC  100 
 
 
159 aa  317  3e-86  Escherichia coli DH1  Bacteria  decreased coverage  0.00219404  n/a   
 
 
-
 
NC_010468  EcolC_1107  SoxR reducing system protein RseC  100 
 
 
159 aa  317  3e-86  Escherichia coli ATCC 8739  Bacteria  normal  0.288168  normal 
 
 
-
 
NC_009800  EcHS_A2725  SoxR reducing system protein RseC  100 
 
 
159 aa  317  3e-86  Escherichia coli HS  Bacteria  normal  0.334856  n/a   
 
 
-
 
CP001509  ECD_02464  RseC protein involved in reduction of the SoxR iron-sulfur cluster  99.37 
 
 
159 aa  317  4e-86  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2935  SoxR reducing system protein RseC  99.37 
 
 
159 aa  317  4e-86  Shigella boydii CDC 3083-94  Bacteria  normal  0.151183  n/a   
 
 
-
 
NC_009801  EcE24377A_2856  SoxR reducing system protein RseC  99.37 
 
 
159 aa  317  4e-86  Escherichia coli E24377A  Bacteria  normal  0.0186933  n/a   
 
 
-
 
NC_011353  ECH74115_3807  SoxR reducing system protein RseC  99.37 
 
 
159 aa  317  4e-86  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.0524065  normal 
 
 
-
 
NC_012892  B21_02428  hypothetical protein  99.37 
 
 
159 aa  317  4e-86  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2723  SoxR reducing system protein RseC  96.86 
 
 
159 aa  310  7e-84  Escherichia coli SMS-3-5  Bacteria  normal  0.149775  normal 
 
 
-
 
NC_011080  SNSL254_A2847  SoxR reducing system protein RseC  81.13 
 
 
159 aa  266  1e-70  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.156123 
 
 
-
 
NC_011083  SeHA_C2851  SoxR reducing system protein RseC  81.76 
 
 
159 aa  266  1e-70  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.74612 
 
 
-
 
NC_011094  SeSA_A2829  SoxR reducing system protein RseC  81.76 
 
 
159 aa  266  1e-70  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2747  SoxR reducing system protein RseC  81.76 
 
 
159 aa  266  1e-70  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0281103  n/a   
 
 
-
 
NC_011205  SeD_A2963  SoxR reducing system protein RseC  81.76 
 
 
159 aa  266  1e-70  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.901953  normal 
 
 
-
 
NC_009436  Ent638_3057  SoxR reducing system protein RseC  72.61 
 
 
158 aa  228  3e-59  Enterobacter sp. 638  Bacteria  normal  0.0908162  hitchhiker  0.000179243 
 
 
-
 
NC_009832  Spro_3673  SoxR reducing system protein RseC  51.3 
 
 
157 aa  179  2e-44  Serratia proteamaculans 568  Bacteria  normal  0.290268  normal  0.795656 
 
 
-
 
NC_010465  YPK_1185  SoxR reducing system protein RseC  52.98 
 
 
151 aa  166  1e-40  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.101352  n/a   
 
 
-
 
NC_010159  YpAngola_A3607  SoxR reducing system protein RseC  52.98 
 
 
151 aa  166  1e-40  Yersinia pestis Angola  Bacteria  hitchhiker  0.00898672  normal 
 
 
-
 
NC_009708  YpsIP31758_1132  SoxR reducing system protein RseC  52.98 
 
 
151 aa  166  1e-40  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0219505  n/a   
 
 
-
 
NC_013421  Pecwa_1201  SoxR reducing system protein RseC  51.68 
 
 
150 aa  153  1e-36  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  1.62902e-05  n/a   
 
 
-
 
NC_012917  PC1_3074  SoxR reducing system protein RseC  48.99 
 
 
150 aa  145  2e-34  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.0025103  n/a   
 
 
-
 
NC_012912  Dd1591_1065  SoxR reducing system protein RseC  47.1 
 
 
156 aa  125  2e-28  Dickeya zeae Ech1591  Bacteria  normal  0.148903  n/a   
 
 
-
 
NC_012880  Dd703_2788  SoxR reducing system protein RseC  44.67 
 
 
155 aa  125  3e-28  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00872544  n/a   
 
 
-
 
NC_008309  HS_1608  positive sigma-E factor regulatory protein  36.73 
 
 
167 aa  87.8  6e-17  Haemophilus somnus 129PT  Bacteria  normal  0.0389331  n/a   
 
 
-
 
NC_011312  VSAL_I2528  sigma-E factor regulatory protein RseC  32.88 
 
 
161 aa  79.3  2e-14  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2932  positive regulator of sigma E, RseC/MucC  29.66 
 
 
168 aa  74.3  6e-13  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.00401591  n/a   
 
 
-
 
NC_008228  Patl_3152  positive regulator of sigma E, RseC/MucC  29.38 
 
 
167 aa  70.1  1e-11  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  4.05546e-07  n/a   
 
 
-
 
NC_009831  Ssed_1145  positive regulator of sigma E, RseC/MucC  31.29 
 
 
151 aa  69.3  2e-11  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  6.88126e-07  normal 
 
 
-
 
NC_003910  CPS_4126  sigma-E factor regulatory protein RseC  34.59 
 
 
159 aa  68.9  3e-11  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1345  sigma-E factor regulatory protein RseC  31.76 
 
 
157 aa  68.2  4e-11  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_1101  positive regulator of sigma E, RseC/MucC  31.47 
 
 
155 aa  67.4  8e-11  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.138854 
 
 
-
 
NC_009901  Spea_1034  positive regulator of sigma E, RseC/MucC  29.93 
 
 
154 aa  67  9e-11  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00221159  n/a   
 
 
-
 
NC_009092  Shew_1051  positive regulator of sigma E, RseC/MucC  28.57 
 
 
158 aa  65.1  3e-10  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000179706  normal 
 
 
-
 
NC_008340  Mlg_1342  positive regulator of sigma E, RseC/MucC  31.25 
 
 
147 aa  65.1  4e-10  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0666262  normal  0.770202 
 
 
-
 
NC_008740  Maqu_2260  positive regulator of sigma E, RseC/MucC  32.43 
 
 
149 aa  64.3  6e-10  Marinobacter aquaeolei VT8  Bacteria  normal  0.32117  n/a   
 
 
-
 
NC_007954  Sden_2769  positive regulator of sigma(E), RseC/MucC  27.21 
 
 
177 aa  62.8  2e-09  Shewanella denitrificans OS217  Bacteria  hitchhiker  5.17336e-06  n/a   
 
 
-
 
NC_011901  Tgr7_1086  positive regulator of sigma E, RseC/MucC  33.1 
 
 
157 aa  62.4  2e-09  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.284991  n/a   
 
 
-
 
NC_011138  MADE_03001  sigma-E factor regulatory protein RseC  27.4 
 
 
148 aa  62.8  2e-09  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0118803  n/a   
 
 
-
 
NC_009052  Sbal_1198  positive regulator of sigma E, RseC/MucC  31.08 
 
 
157 aa  62.4  2e-09  Shewanella baltica OS155  Bacteria  decreased coverage  6.34638e-05  n/a   
 
 
-
 
NC_009656  PSPA7_4754  positive regulator for alginate biosynthesis MucC  32.14 
 
 
151 aa  62  3e-09  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0730  positive regulator of sigma(E), RseC/MucC  35.54 
 
 
167 aa  62.4  3e-09  Thiomicrospira crunogena XCL-2  Bacteria  decreased coverage  9.50135e-14  n/a   
 
 
-
 
NC_011663  Sbal223_3115  positive regulator of sigma E, RseC/MucC  30.41 
 
 
157 aa  60.5  8e-09  Shewanella baltica OS223  Bacteria  normal  0.0121324  normal  0.0261972 
 
 
-
 
NC_009997  Sbal195_1275  positive regulator of sigma E, RseC/MucC  30.41 
 
 
157 aa  60.5  8e-09  Shewanella baltica OS195  Bacteria  normal  0.0820222  normal 
 
 
-
 
NC_009665  Shew185_1242  positive regulator of sigma E, RseC/MucC  30.41 
 
 
157 aa  60.5  8e-09  Shewanella baltica OS185  Bacteria  hitchhiker  0.000737615  n/a   
 
 
-
 
NC_009438  Sputcn32_1156  positive regulator of sigma E, RseC/MucC  33 
 
 
157 aa  58.5  3e-08  Shewanella putrefaciens CN-32  Bacteria  normal  0.0373343  n/a   
 
 
-
 
NC_008463  PA14_54400  positive regulator for alginate biosynthesis MucC  30.71 
 
 
151 aa  56.6  1e-07  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.675062  normal 
 
 
-
 
NC_013889  TK90_1953  positive regulator of sigma E, RseC/MucC  28.08 
 
 
151 aa  53.9  9e-07  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13883  normal 
 
 
-
 
NC_012560  Avin_13720  Positive regulator for alginate biosynthesis MucC  30.34 
 
 
156 aa  53.1  2e-06  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0068  sigma-E factor regulatory protein RseC  28.93 
 
 
149 aa  51.6  4e-06  Psychromonas ingrahamii 37  Bacteria  decreased coverage  1.26596e-06  normal  0.71927 
 
 
-
 
NC_007298  Daro_1491  positive regulator of sigma(E), RseC/MucC  33.73 
 
 
180 aa  50.8  6e-06  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.392689 
 
 
-
 
NC_013422  Hneap_0704  positive regulator of sigma E, RseC/MucC  34.43 
 
 
183 aa  49.3  2e-05  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1470  positive regulator of sigma E, RseC/MucC  32.64 
 
 
151 aa  48.1  5e-05  Pseudomonas mendocina ymp  Bacteria  normal  0.51254  normal 
 
 
-
 
NC_007298  Daro_2023  positive regulator of sigma(E), RseC/MucC  30 
 
 
147 aa  47.8  7e-05  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00574884  normal 
 
 
-
 
NC_002977  MCA1468  sigma factor regulator MucC  30.19 
 
 
146 aa  46.6  0.0001  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2248  positive regulator for alginate biosynthesis MucC  29.92 
 
 
156 aa  45.8  0.0002  Saccharophagus degradans 2-40  Bacteria  hitchhiker  1.24681e-06  normal  0.0231164 
 
 
-
 
NC_013456  VEA_002494  sigma factor RpoE regulatory protein RseC  32.33 
 
 
156 aa  43.9  0.0009  Vibrio sp. Ex25  Bacteria  decreased coverage  2.04046e-07  n/a   
 
 
-
 
NC_008321  Shewmr4_2851  positive regulator of sigma(E), RseC/MucC  32.56 
 
 
157 aa  43.5  0.001  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00520564  normal 
 
 
-
 
NC_008700  Sama_0877  sigma-E factor regulatory protein RseC  31.51 
 
 
159 aa  42.7  0.002  Shewanella amazonensis SB2B  Bacteria  normal  0.475594  normal  0.0507678 
 
 
-
 
NC_007404  Tbd_2092  putative positive regulator of sigma E activity  34.78 
 
 
144 aa  43.1  0.002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_03539  positive regulator of sigma E activity  31.17 
 
 
156 aa  41.6  0.004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_1240  positive regulator of sigma E, RseC/MucC  28.19 
 
 
151 aa  41.6  0.004  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  1.39307e-05  hitchhiker  1.57643e-05 
 
 
-
 
NC_011899  Hore_13330  positive regulator of sigma E, RseC/MucC  23.78 
 
 
143 aa  40.8  0.009  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00188105  n/a   
 
 
-
 
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