More than 300 homologs were found in PanDaTox collection
for query gene EcDH1_0193 on replicon CP001637
Organism: Escherichia coli DH1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_03368  predicted DNA-binding response regulator in two-component regulatory system  100 
 
 
200 aa  416  1e-115  Escherichia coli BL21(DE3)  Bacteria  decreased coverage  0.000358261  n/a   
 
 
-
 
NC_012892  B21_03321  hypothetical protein  100 
 
 
200 aa  416  1e-115  Escherichia coli BL21  Bacteria  decreased coverage  0.00023179  n/a   
 
 
-
 
NC_010658  SbBS512_E3925  transcriptional regulator, LuxR family  100 
 
 
200 aa  416  1e-115  Shigella boydii CDC 3083-94  Bacteria  normal  0.237516  n/a   
 
 
-
 
NC_011353  ECH74115_4883  transcriptional regulator, LuxR family  99.5 
 
 
200 aa  414  1e-115  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_4008  LuxR family transcriptional regulator  100 
 
 
200 aa  416  1e-115  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3824  LuxR family transcriptional regulator  99.5 
 
 
200 aa  414  1e-115  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.201276 
 
 
-
 
NC_010468  EcolC_0197  two component LuxR family transcriptional regulator  100 
 
 
200 aa  416  1e-115  Escherichia coli ATCC 8739  Bacteria  decreased coverage  0.000437068  normal 
 
 
-
 
NC_009800  EcHS_A3723  LuxR family transcriptional regulator  100 
 
 
200 aa  416  1e-115  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0193  transcriptional regulator, LuxR family  100 
 
 
200 aa  416  1e-115  Escherichia coli DH1  Bacteria  decreased coverage  2.10245e-07  n/a   
 
 
-
 
NC_011205  SeD_A3981  putative transcriptional regulator  73 
 
 
200 aa  310  1e-83  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.347336 
 
 
-
 
NC_011083  SeHA_C3921  putative transcriptional regulator  72 
 
 
200 aa  306  2e-82  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3800  putative transcriptional regulator  72 
 
 
200 aa  306  2e-82  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3813  putative transcriptional regulator  72 
 
 
200 aa  306  2e-82  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3878  putative transcriptional regulator  71.5 
 
 
200 aa  301  4e-81  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0582  two component transcriptional regulator, LuxR family  36.45 
 
 
204 aa  137  9e-32  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2046  two component transcriptional regulator, LuxR family  33.74 
 
 
219 aa  89.7  2e-17  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  28.29 
 
 
220 aa  89  4e-17  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  28.29 
 
 
238 aa  89.4  4e-17  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  28.29 
 
 
220 aa  89  5e-17  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  1.52825e-05 
 
 
-
 
NC_012856  Rpic12D_1738  two component transcriptional regulator, LuxR family  31.07 
 
 
219 aa  88.2  7e-17  Ralstonia pickettii 12D  Bacteria  normal  0.0459515  normal  0.949758 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  28.43 
 
 
220 aa  87.8  8e-17  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  25.5 
 
 
222 aa  87.8  8e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  25.98 
 
 
220 aa  87.8  9e-17  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4255  LuxR family transcriptional regulator  28.71 
 
 
227 aa  85.9  4e-16  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0102406 
 
 
-
 
NC_010552  BamMC406_4781  LuxR family transcriptional regulator  28.71 
 
 
227 aa  85.9  4e-16  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0502492  normal 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  27.45 
 
 
219 aa  85.9  4e-16  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_003910  CPS_0937  LuxR family DNA-binding response regulator  27.72 
 
 
223 aa  85.5  4e-16  Colwellia psychrerythraea 34H  Bacteria  normal  0.715087  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  28.16 
 
 
220 aa  85.5  5e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  26 
 
 
221 aa  84.3  1e-15  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  27.45 
 
 
219 aa  84  1e-15  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  26.73 
 
 
221 aa  82.8  3e-15  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  27.05 
 
 
219 aa  83.2  3e-15  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  27.45 
 
 
220 aa  82.8  3e-15  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  1.66193e-09 
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  27.36 
 
 
218 aa  82  5e-15  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  27.45 
 
 
220 aa  82  5e-15  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  27.45 
 
 
220 aa  82  5e-15  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  27.45 
 
 
219 aa  82  6e-15  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  25.98 
 
 
220 aa  81.6  7e-15  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  29.7 
 
 
216 aa  80.5  2e-14  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  25.96 
 
 
227 aa  79.7  2e-14  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  26.96 
 
 
220 aa  80.5  2e-14  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  27.14 
 
 
209 aa  79.7  3e-14  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  26.34 
 
 
223 aa  79  4e-14  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.211294 
 
 
-
 
NC_011666  Msil_2341  two component transcriptional regulator, LuxR family  35.34 
 
 
209 aa  79  4e-14  Methylocella silvestris BL2  Bacteria  n/a    normal  0.193906 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  27.44 
 
 
227 aa  78.6  5e-14  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  27.23 
 
 
219 aa  78.6  6e-14  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_007410  Ava_B0209  two component LuxR family transcriptional regulator  28.11 
 
 
223 aa  78.2  8e-14  Anabaena variabilis ATCC 29413  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  27.18 
 
 
219 aa  77.8  1e-13  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_010577  XfasM23_0261  two component LuxR family transcriptional regulator  26.37 
 
 
210 aa  76.6  2e-13  Xylella fastidiosa M23  Bacteria  normal  0.574059  n/a   
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  25.84 
 
 
223 aa  76.6  2e-13  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  32.06 
 
 
217 aa  77  2e-13  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  27.78 
 
 
235 aa  77  2e-13  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  29.25 
 
 
217 aa  76.3  3e-13  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  29.25 
 
 
217 aa  76.3  3e-13  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0179  LuxR family DNA-binding response regulator  30.53 
 
 
219 aa  75.9  4e-13  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0290  response regulator receiver protein  26.37 
 
 
210 aa  75.1  6e-13  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_3305  LuxR family DNA-binding response regulator  28.08 
 
 
206 aa  75.1  6e-13  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_3420  LuxR family DNA-binding response regulator  25.74 
 
 
216 aa  75.1  7e-13  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  25.87 
 
 
220 aa  74.7  8e-13  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  24.88 
 
 
223 aa  74.7  9e-13  Shewanella sp. MR-4  Bacteria  normal  normal  0.335218 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  24.88 
 
 
223 aa  74.7  9e-13  Shewanella sp. MR-7  Bacteria  normal  normal  0.358413 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  26.32 
 
 
217 aa  74.3  1e-12  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  24.88 
 
 
223 aa  74.3  1e-12  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  26.34 
 
 
214 aa  74.3  1e-12  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.785726 
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  32.21 
 
 
204 aa  73.9  1e-12  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  30.46 
 
 
214 aa  73.9  1e-12  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  24.64 
 
 
239 aa  73.2  2e-12  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  30.43 
 
 
215 aa  73.6  2e-12  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1159  two component LuxR family transcriptional regulator  30.1 
 
 
209 aa  73.2  2e-12  Sphingomonas wittichii RW1  Bacteria  normal  0.942847  normal  0.660482 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  29.03 
 
 
216 aa  72.4  4e-12  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  26.63 
 
 
216 aa  72.4  4e-12  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  29.03 
 
 
216 aa  72.4  4e-12  Pseudomonas putida KT2440  Bacteria  normal  normal  0.0994806 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  29.68 
 
 
215 aa  72.4  4e-12  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  29.03 
 
 
216 aa  72  5e-12  Pseudomonas putida W619  Bacteria  normal  hitchhiker  1.36895e-06 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  26.63 
 
 
221 aa  72  5e-12  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_010506  Swoo_2245  two component LuxR family transcriptional regulator  30.83 
 
 
218 aa  71.6  6e-12  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00227369  normal  0.0543921 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  24.44 
 
 
224 aa  72  6e-12  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  26.87 
 
 
210 aa  72  6e-12  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2326  two component LuxR family transcriptional regulator  30.62 
 
 
210 aa  71.6  7e-12  Parvibaculum lavamentivorans DS-1  Bacteria  normal  hitchhiker  0.000518478 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  28.95 
 
 
211 aa  71.6  7e-12  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008789  Hhal_1965  two component LuxR family transcriptional regulator  28.1 
 
 
217 aa  71.6  7e-12  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  25.49 
 
 
211 aa  71.6  7e-12  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  27.08 
 
 
201 aa  70.9  1e-11  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  25.63 
 
 
221 aa  70.9  1e-11  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  29.68 
 
 
216 aa  70.9  1e-11  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.192356 
 
 
-
 
NC_013161  Cyan8802_1954  two component transcriptional regulator, LuxR family  25.12 
 
 
221 aa  70.1  2e-11  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.682063 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  26.37 
 
 
213 aa  70.1  2e-11  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  28.39 
 
 
216 aa  70.5  2e-11  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  3.17123e-09 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  26.83 
 
 
232 aa  70.1  2e-11  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_011726  PCC8801_1927  two component transcriptional regulator, LuxR family  25.12 
 
 
221 aa  70.1  2e-11  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  29.14 
 
 
241 aa  69.7  2e-11  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0133592 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  24.14 
 
 
212 aa  69.7  3e-11  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  28.02 
 
 
226 aa  69.7  3e-11  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  27.74 
 
 
215 aa  69.7  3e-11  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3950  LuxR family DNA-binding response regulator  28.79 
 
 
210 aa  69.7  3e-11  Pseudomonas aeruginosa PA7  Bacteria  normal  0.331441  n/a   
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  29.86 
 
 
218 aa  69.3  3e-11  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  28.95 
 
 
209 aa  69.3  3e-11  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  26.89 
 
 
220 aa  69.7  3e-11  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  25.24 
 
 
216 aa  69.3  3e-11  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  26.83 
 
 
232 aa  68.9  4e-11  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
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