More than 300 homologs were found in PanDaTox collection
for query gene DvMF_1733 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007519  Dde_3756  periplasmic (NiFe) hydrogenase, large subunit, isozyme 2  60.69 
 
 
554 aa  721    Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1733  nickel-dependent hydrogenase large subunit  100 
 
 
549 aa  1144    Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_0718  nickel-dependent hydrogenase, large subunit  77.05 
 
 
549 aa  887    Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.338951 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  52.19 
 
 
566 aa  614  9.999999999999999e-175  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  53.1 
 
 
568 aa  605  9.999999999999999e-173  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  52.01 
 
 
566 aa  593  1e-168  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  53.28 
 
 
567 aa  590  1e-167  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  51.26 
 
 
569 aa  583  1.0000000000000001e-165  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  50 
 
 
558 aa  558  1e-157  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  50.28 
 
 
546 aa  551  1e-155  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  42.2 
 
 
566 aa  449  1e-125  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  42.48 
 
 
566 aa  445  1.0000000000000001e-124  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  42 
 
 
569 aa  443  1e-123  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  43.73 
 
 
564 aa  445  1e-123  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  42.93 
 
 
566 aa  443  1e-123  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  43.19 
 
 
578 aa  442  1e-123  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  42.58 
 
 
559 aa  443  1e-123  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  40.53 
 
 
570 aa  439  9.999999999999999e-123  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  42.47 
 
 
560 aa  437  1e-121  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  43.22 
 
 
600 aa  438  1e-121  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  41.92 
 
 
567 aa  436  1e-121  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  43.22 
 
 
600 aa  438  1e-121  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  42.25 
 
 
577 aa  436  1e-121  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  43.05 
 
 
600 aa  437  1e-121  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  43.22 
 
 
600 aa  438  1e-121  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  41.12 
 
 
570 aa  437  1e-121  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  43.22 
 
 
600 aa  438  1e-121  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  41.06 
 
 
568 aa  434  1e-120  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  42.3 
 
 
573 aa  432  1e-120  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_008599  CFF8240_0939  quinone-reactive Ni/Fe-hydrogenase large chain  42.1 
 
 
573 aa  433  1e-120  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.0992433  n/a   
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  41.8 
 
 
567 aa  433  1e-120  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  42.47 
 
 
559 aa  431  1e-119  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  42.44 
 
 
597 aa  431  1e-119  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  42.68 
 
 
559 aa  431  1e-119  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  41.39 
 
 
567 aa  428  1e-118  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  41.38 
 
 
597 aa  425  1e-118  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  41.56 
 
 
567 aa  427  1e-118  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  41.56 
 
 
567 aa  428  1e-118  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  42.13 
 
 
567 aa  427  1e-118  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  41.39 
 
 
567 aa  428  1e-118  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  41.56 
 
 
567 aa  428  1e-118  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  42.93 
 
 
596 aa  426  1e-118  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  42.86 
 
 
597 aa  424  1e-117  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_003912  CJE1402  quinone-reactive Ni/Fe-hydrogenase, large subunit  41.31 
 
 
571 aa  422  1e-117  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  40.61 
 
 
573 aa  422  1e-117  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  40.88 
 
 
560 aa  419  1e-116  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  42.14 
 
 
598 aa  421  1e-116  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  41.58 
 
 
567 aa  420  1e-116  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  42.51 
 
 
597 aa  420  1e-116  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  41.74 
 
 
567 aa  416  9.999999999999999e-116  Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_012039  Cla_0713  Ni/Fe-hydrogenase, large subunit  41.25 
 
 
571 aa  416  9.999999999999999e-116  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1375  Ni-Fe hydrogenase large chain  40.37 
 
 
596 aa  416  9.999999999999999e-116  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0200361  normal 
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  40.34 
 
 
597 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_007493  RSP_0496  hydrogenase protein large subunit  41.92 
 
 
596 aa  417  9.999999999999999e-116  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  41.74 
 
 
567 aa  416  9.999999999999999e-116  Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  41.55 
 
 
596 aa  418  9.999999999999999e-116  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  40.85 
 
 
572 aa  418  9.999999999999999e-116  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2147  nickel-dependent hydrogenase, large subunit  41.92 
 
 
596 aa  417  9.999999999999999e-116  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0605986  normal  0.266797 
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  40.41 
 
 
585 aa  416  9.999999999999999e-116  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_009707  JJD26997_0459  quinone-reactive Ni/Fe-hydrogenase, large subunit  41.13 
 
 
571 aa  417  9.999999999999999e-116  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000643457  n/a   
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  41.74 
 
 
567 aa  416  9.999999999999999e-116  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  40.41 
 
 
585 aa  416  9.999999999999999e-116  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1282  quinone-reactive Ni/Fe-hydrogenase, large subunit  40.96 
 
 
571 aa  416  9.999999999999999e-116  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00216082  n/a   
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  40.94 
 
 
572 aa  414  1e-114  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_009665  Shew185_1914  nickel-dependent hydrogenase large subunit  41.56 
 
 
567 aa  414  1e-114  Shewanella baltica OS185  Bacteria  normal  0.392356  n/a   
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  40.87 
 
 
572 aa  414  1e-114  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  41.92 
 
 
568 aa  410  1e-113  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  40.89 
 
 
583 aa  409  1e-113  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  40.51 
 
 
568 aa  409  1e-113  Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
NC_009429  Rsph17025_3375  hypothetical protein  40.55 
 
 
596 aa  411  1e-113  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.281049  normal 
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  41.38 
 
 
595 aa  409  1e-113  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  41.73 
 
 
567 aa  407  1.0000000000000001e-112  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_009720  Xaut_2174  nickel-dependent hydrogenase large subunit  41.67 
 
 
604 aa  406  1.0000000000000001e-112  Xanthobacter autotrophicus Py2  Bacteria  hitchhiker  0.0021467  normal  0.160198 
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  40.04 
 
 
572 aa  407  1.0000000000000001e-112  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_011094  SeSA_A3329  hydrogenase 2 large subunit  39.65 
 
 
567 aa  406  1.0000000000000001e-112  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3400  hydrogenase 2 large subunit  39.65 
 
 
567 aa  405  1.0000000000000001e-112  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C3394  hydrogenase 2 large subunit  39.65 
 
 
567 aa  405  1.0000000000000001e-112  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.571998 
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  40.21 
 
 
572 aa  408  1.0000000000000001e-112  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  40.53 
 
 
570 aa  407  1.0000000000000001e-112  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3495  hydrogenase 2 large subunit  39.65 
 
 
567 aa  405  1.0000000000000001e-112  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.233634  normal 
 
 
-
 
NC_012892  B21_02819  hypothetical protein  39.05 
 
 
567 aa  403  1e-111  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02870  hydrogenase 2, large subunit  39.05 
 
 
567 aa  403  1e-111  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  39.05 
 
 
567 aa  403  1e-111  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  39.05 
 
 
567 aa  403  1e-111  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3463  hydrogenase 2 large subunit  39.05 
 
 
567 aa  403  1e-111  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3280  hydrogenase 2 large subunit  39.05 
 
 
567 aa  403  1e-111  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_1209  hydrogenase 1 large subunit  40.34 
 
 
597 aa  403  1e-111  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1347  hydrogenase 1 large subunit  40.17 
 
 
597 aa  402  1e-111  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  41.32 
 
 
567 aa  403  1e-111  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3320  hydrogenase 2 large subunit  39.47 
 
 
567 aa  404  1e-111  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.118706  n/a   
 
 
-
 
NC_011083  SeHA_C1985  hydrogenase 1 large subunit  40.35 
 
 
597 aa  402  1e-111  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  39.05 
 
 
567 aa  402  1e-111  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1368  nickel-dependent hydrogenase large subunit  40.74 
 
 
571 aa  402  1e-111  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  40.31 
 
 
570 aa  404  1e-111  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  39.18 
 
 
584 aa  404  1e-111  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  39.05 
 
 
567 aa  403  1e-111  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  39.3 
 
 
572 aa  404  1e-111  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  39.05 
 
 
567 aa  403  1e-111  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
NC_010498  EcSMS35_2144  hydrogenase 1 large subunit  40.17 
 
 
597 aa  401  9.999999999999999e-111  Escherichia coli SMS-3-5  Bacteria  normal  0.375749  normal  0.757738 
 
 
-
 
NC_009715  CCV52592_1902  quinone-reactive Ni/Fe-hydrogenase large chain  40.43 
 
 
572 aa  400  9.999999999999999e-111  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
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