More than 300 homologs were found in PanDaTox collection
for query gene DvMF_0063 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_0063  response regulator receiver protein  100 
 
 
130 aa  263  8e-70  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_1780  response regulator receiver protein  73.85 
 
 
130 aa  196  1e-49  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.233106 
 
 
-
 
NC_007519  Dde_1521  response regulator receiver domain-containing protein  72 
 
 
126 aa  186  1e-46  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2829  response regulator receiver protein  45.16 
 
 
134 aa  96.3  1e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008741  Dvul_3023  response regulator receiver protein  43.27 
 
 
130 aa  86.3  1e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0715  response regulator receiver protein  40.19 
 
 
124 aa  85.5  2e-16  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  35.43 
 
 
393 aa  84  6e-16  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_002947  PP_2165  response regulator  35.43 
 
 
393 aa  84  6e-16  Pseudomonas putida KT2440  Bacteria  normal  0.0249002  normal  0.813701 
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  35.43 
 
 
412 aa  83.6  9e-16  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  34.65 
 
 
393 aa  81.6  3e-15  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  33.87 
 
 
412 aa  75.1  3e-13  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  33.87 
 
 
394 aa  73.2  1e-12  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2359  putative two-component response regulator  33.06 
 
 
394 aa  72.8  2e-12  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2457  metal dependent phosphohydrolase  31.67 
 
 
358 aa  72.8  2e-12  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2828  response regulator receiver sensor signal transduction histidine kinase  30.7 
 
 
410 aa  71.6  4e-12  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_32720  Response regulator  34.51 
 
 
394 aa  70.9  5e-12  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2550  multi-sensor signal transduction histidine kinase  37.07 
 
 
685 aa  70.9  6e-12  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_004578  PSPTO_2117  response regulator  31.5 
 
 
394 aa  70.9  6e-12  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0129975  n/a   
 
 
-
 
NC_007517  Gmet_0555  two component, sigma54 specific, Fis family transcriptional regulator  39.58 
 
 
457 aa  70.5  8e-12  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  31.45 
 
 
394 aa  70.1  9e-12  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_007492  Pfl01_2004  two component, sigma-54 specific, Fis family transcriptional regulator  43.21 
 
 
478 aa  69.7  1e-11  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.753041 
 
 
-
 
NC_009439  Pmen_1929  response regulator receiver protein  31.5 
 
 
394 aa  69.3  2e-11  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.310245 
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  37.5 
 
 
457 aa  68.2  4e-11  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1886  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
461 aa  67.4  6e-11  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1745  response regulator receiver sensor signal transduction histidine kinase  38.68 
 
 
417 aa  67.4  6e-11  Geobacter lovleyi SZ  Bacteria  normal  0.0330192  n/a   
 
 
-
 
NC_007760  Adeh_1992  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
460 aa  67.4  6e-11  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  37.86 
 
 
455 aa  67.4  7e-11  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  35.45 
 
 
464 aa  67  8e-11  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  38.46 
 
 
491 aa  66.6  1e-10  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
NC_007519  Dde_3465  putative PAS/PAC sensor protein  31.86 
 
 
489 aa  66.2  1e-10  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0628  two component, sigma54 specific, transcriptional regulator, Fis family  34.96 
 
 
446 aa  65.9  2e-10  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1919  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  34.95 
 
 
350 aa  65.9  2e-10  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.179225 
 
 
-
 
NC_012918  GM21_0268  two component, sigma54 specific, transcriptional regulator, Fis family  34.96 
 
 
456 aa  65.5  2e-10  Geobacter sp. M21  Bacteria  n/a    normal  0.0540037 
 
 
-
 
NC_013173  Dbac_0976  anti-sigma-factor antagonist  32.17 
 
 
237 aa  65.9  2e-10  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2645  response regulator receiver modulated metal dependent phosphohydrolase  32.74 
 
 
364 aa  65.5  2e-10  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3715  multi-sensor signal transduction histidine kinase  34.23 
 
 
653 aa  65.9  2e-10  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0283  two component, sigma54 specific, transcriptional regulator, Fis family  45.59 
 
 
456 aa  65.5  2e-10  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0458  response regulator receiver protein  34.19 
 
 
120 aa  65.9  2e-10  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.000275929  n/a   
 
 
-
 
NC_010814  Glov_1377  two component, sigma54 specific, transcriptional regulator, Fis family  38.3 
 
 
462 aa  65.1  3e-10  Geobacter lovleyi SZ  Bacteria  normal  0.244526  n/a   
 
 
-
 
NC_009783  VIBHAR_03091  hypothetical protein  30.33 
 
 
368 aa  65.1  3e-10  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012918  GM21_1440  response regulator receiver protein  33.64 
 
 
219 aa  65.1  3e-10  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  34.55 
 
 
464 aa  65.1  3e-10  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  35.45 
 
 
463 aa  64.7  4e-10  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  50.88 
 
 
456 aa  65.1  4e-10  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  45.45 
 
 
231 aa  64.7  4e-10  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  4.30064e-07  n/a   
 
 
-
 
NC_013456  VEA_002881  response regulator  31.58 
 
 
368 aa  64.3  5e-10  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2094  response regulator  38.76 
 
 
329 aa  64.3  5e-10  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1875  response regulator receiver modulated metal dependent phosphohydrolase  32.79 
 
 
361 aa  64.3  6e-10  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1105  two component, sigma54 specific, Fis family transcriptional regulator  36.36 
 
 
475 aa  63.9  7e-10  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.926771  normal  0.835973 
 
 
-
 
NC_007519  Dde_0532  response regulator receiver /GGDEF/PAS/PAC domain-containing protein  33.96 
 
 
715 aa  63.9  7e-10  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  34.11 
 
 
213 aa  63.9  7e-10  Methylobacillus flagellatus KT  Bacteria  hitchhiker  1.80305e-06  normal 
 
 
-
 
NC_008751  Dvul_2096  signal transduction histidine kinase  33.33 
 
 
526 aa  63.9  8e-10  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.0713574 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  33.61 
 
 
451 aa  63.5  8e-10  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  43.94 
 
 
231 aa  63.5  9e-10  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_013173  Dbac_0913  response regulator receiver sensor hybrid histidine kinase  29.06 
 
 
544 aa  63.5  1e-09  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1847  two component, sigma54 specific, Fis family transcriptional regulator  32.5 
 
 
459 aa  63.2  1e-09  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.122843  normal  0.436579 
 
 
-
 
NC_011206  Lferr_0029  two component, sigma54 specific, transcriptional regulator, Fis family  35.29 
 
 
455 aa  63.2  1e-09  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.59486  normal  0.125276 
 
 
-
 
NC_011761  AFE_0027  sigma-54 dependent transcriptional regulator/response regulator  35.29 
 
 
455 aa  63.2  1e-09  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2015  two component hybrid sensor response regulator  32.71 
 
 
391 aa  62.8  2e-09  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1544  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  32.48 
 
 
739 aa  62.8  2e-09  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.498595 
 
 
-
 
NC_012918  GM21_1811  response regulator receiver modulated metal dependent phosphohydrolase  32.71 
 
 
347 aa  62.8  2e-09  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00843757 
 
 
-
 
NC_011728  BbuZS7_0791  acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor)  49.18 
 
 
451 aa  62  2e-09  Borrelia burgdorferi ZS7  Bacteria  normal  0.261898  n/a   
 
 
-
 
NC_009675  Anae109_2365  multi-sensor signal transduction histidine kinase  39.29 
 
 
734 aa  62.4  2e-09  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.656612  hitchhiker  8.90263e-05 
 
 
-
 
NC_011146  Gbem_3286  two component, sigma54 specific, transcriptional regulator, Fis family  34.95 
 
 
458 aa  62.4  2e-09  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2407  response regulator receiver modulated metal dependent phosphohydrolase  32.71 
 
 
347 aa  62.8  2e-09  Geobacter bemidjiensis Bem  Bacteria  normal  0.21688  n/a   
 
 
-
 
NC_012918  GM21_0962  two component, sigma54 specific, transcriptional regulator, Fis family  34.95 
 
 
458 aa  61.6  3e-09  Geobacter sp. M21  Bacteria  n/a    normal  0.277353 
 
 
-
 
NC_012917  PC1_1979  response regulator of RpoS  33.33 
 
 
338 aa  61.6  3e-09  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.46167  n/a   
 
 
-
 
NC_011831  Cagg_2019  GAF sensor hybrid histidine kinase  36.52 
 
 
1016 aa  62  3e-09  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.25506  normal 
 
 
-
 
NC_011831  Cagg_2217  two component transcriptional regulator, winged helix family  40.3 
 
 
276 aa  62  3e-09  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00294817  normal 
 
 
-
 
NC_008751  Dvul_2526  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  29.03 
 
 
715 aa  62  3e-09  Desulfovibrio vulgaris DP4  Bacteria  normal  0.263284  normal  0.0502692 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  38.05 
 
 
456 aa  61.6  3e-09  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  33.98 
 
 
473 aa  61.6  3e-09  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_002947  PP_3419  two component, sigma54 specific, transcriptional regulator, Fis family  38.27 
 
 
475 aa  61.6  3e-09  Pseudomonas putida KT2440  Bacteria  normal  0.0592604  normal  0.514799 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  40 
 
 
235 aa  61.6  3e-09  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0828  multi-sensor signal transduction histidine kinase  28.57 
 
 
567 aa  62  3e-09  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2788  two component, sigma54 specific, Fis family transcriptional regulator  38.27 
 
 
474 aa  62  3e-09  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5999  response regulator receiver protein  35.65 
 
 
280 aa  61.6  3e-09  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.19 
 
 
994 aa  61.6  4e-09  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_010718  Nther_0916  two component transcriptional regulator, winged helix family  30.3 
 
 
234 aa  61.6  4e-09  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0276045  hitchhiker  9.72711e-18 
 
 
-
 
NC_013173  Dbac_2325  response regulator receiver modulated metal dependent phosphohydrolase  33.04 
 
 
362 aa  61.6  4e-09  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.663275  n/a   
 
 
-
 
NC_009943  Dole_1347  response regulator receiver protein  31.03 
 
 
688 aa  60.8  5e-09  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2343  two component transcriptional regulator, Fis family  38.46 
 
 
185 aa  60.8  5e-09  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.888574  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  41.98 
 
 
215 aa  61.2  5e-09  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1607  two component Fis family transcriptional regulator  38.46 
 
 
185 aa  60.8  5e-09  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.016434  n/a   
 
 
-
 
NC_009512  Pput_2343  two component, sigma54 specific, Fis family transcriptional regulator  38.27 
 
 
475 aa  61.2  5e-09  Pseudomonas putida F1  Bacteria  normal  0.835742  normal 
 
 
-
 
NC_011146  Gbem_2160  two component, sigma54 specific, transcriptional regulator, Fis family  38.05 
 
 
449 aa  61.2  5e-09  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2255  two component transcriptional regulator, Fis family  38.46 
 
 
185 aa  60.8  5e-09  Anaeromyxobacter sp. K  Bacteria  normal  0.0449716  n/a   
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  37.74 
 
 
476 aa  60.8  6e-09  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  33.98 
 
 
466 aa  60.8  6e-09  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_012560  Avin_29000  sigma54-dependent response regulator, two-component  37.04 
 
 
472 aa  60.5  7e-09  Azotobacter vinelandii DJ  Bacteria  normal  0.99042  n/a   
 
 
-
 
NC_010524  Lcho_0108  two component, sigma54 specific, Fis family transcriptional regulator  37.25 
 
 
465 aa  60.5  7e-09  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000558041 
 
 
-
 
NC_009428  Rsph17025_1924  two component transcriptional regulator  45 
 
 
230 aa  60.5  7e-09  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.781724  normal  0.399122 
 
 
-
 
NC_009523  RoseRS_0805  two component transcriptional regulator  43.94 
 
 
229 aa  60.5  7e-09  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2723  putative PAS/PAC sensor protein  35.59 
 
 
285 aa  60.5  7e-09  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1114  two component, sigma54 specific, transcriptional regulator, Fis family  33.64 
 
 
501 aa  60.5  7e-09  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0476  CheA signal transduction histidine kinase  38.89 
 
 
1629 aa  60.5  8e-09  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_0895  two component transcriptional regulator, winged helix family  31.25 
 
 
232 aa  60.5  8e-09  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0710  two component, sigma54 specific, Fis family transcriptional regulator  35.58 
 
 
456 aa  60.5  8e-09  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1055  two component, sigma54 specific, Fis family transcriptional regulator  33.64 
 
 
481 aa  60.5  8e-09  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.874499  n/a   
 
 
-
 
NC_011891  A2cp1_1183  two component, sigma54 specific, transcriptional regulator, Fis family  33.64 
 
 
481 aa  60.5  8e-09  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
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