More than 300 homologs were found in PanDaTox collection
for query gene Dtpsy_3040 on replicon NC_011992
Organism: Acidovorax ebreus TPSY



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010676  Bphyt_4689  Carbamoyl-phosphate synthase L chain ATP-binding  57.77 
 
 
692 aa  714    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0265  acyl-CoA carboxylase subunit alpha  59.85 
 
 
712 aa  731    Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2125  carbamoyl-phosphate synthase L chain, ATP-binding  53.46 
 
 
662 aa  636    Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1605  putative acetyl-CoA carboxylase, biotin carboxylase  63 
 
 
664 aa  714    Burkholderia mallei NCTC 10247  Bacteria  normal  0.585456  n/a   
 
 
-
 
NC_008752  Aave_4351  3-methylcrotonoyl-CoA carboxylase, alpha subunit  76.79 
 
 
677 aa  976    Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0805  putative acetyl-CoA carboxylase, biotin carboxylase  62.85 
 
 
664 aa  712    Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0311  3-methylcrotonoyl-CoA carboxylase, alpha subunit  60.65 
 
 
706 aa  803    Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0089  3-methylcrotonoyl-CoA carboxylase, alpha subunit  57.33 
 
 
666 aa  679    Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0151  3-methylcrotonoyl-CoA carboxylase, alpha subunit  61.79 
 
 
674 aa  744    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1463  3-methylcrotonoyl-CoA carboxylase, alpha subunit  60.89 
 
 
674 aa  732    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0847  carbamoyl-phosphate synthase L chain, ATP-binding  70.95 
 
 
730 aa  928    Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0468  biotin carboxylase subunit of acetyl-CoA carboxylase  62.81 
 
 
666 aa  712    Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5118  carbamoyl-phosphate synthase L chain ATP-binding  62.72 
 
 
666 aa  739    Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_0196  Carbamoyl-phosphate synthase L chain ATP-binding  56.28 
 
 
660 aa  657    Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.469913  normal 
 
 
-
 
NC_007511  Bcep18194_B0426  3-methylcrotonoyl-CoA carboxylase, alpha subunit  62.91 
 
 
665 aa  728    Burkholderia sp. 383  Bacteria  normal  0.967801  normal 
 
 
-
 
NC_008835  BMA10229_0651  putative acetyl-CoA carboxylase, biotin carboxylase  63 
 
 
664 aa  714    Burkholderia mallei NCTC 10229  Bacteria  normal  0.547961  n/a   
 
 
-
 
NC_008782  Ajs_3759  3-methylcrotonoyl-CoA carboxylase, alpha subunit  99.7 
 
 
672 aa  1366    Acidovorax sp. JS42  Bacteria  normal  normal  0.746239 
 
 
-
 
NC_007517  Gmet_3292  3-methylcrotonoyl-CoA carboxylase, alpha subunit  55.07 
 
 
668 aa  650    Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5035  carbamoyl-phosphate synthase L chain ATP-binding  63.41 
 
 
665 aa  752    Burkholderia cenocepacia MC0-3  Bacteria  normal  0.70526  normal 
 
 
-
 
NC_007650  BTH_II0950  biotin carboxylase  62.04 
 
 
666 aa  702    Burkholderia thailandensis E264  Bacteria  normal  0.790249  n/a   
 
 
-
 
NC_008784  BMASAVP1_0539  putative acetyl-CoA carboxylase, biotin carboxylase  63 
 
 
664 aa  714    Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7691  acetyl-CoA carboxylase biotin carboxylase  55.16 
 
 
662 aa  661    Agrobacterium vitis S4  Bacteria  normal  0.817206  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1956  putative acetyl-CoA carboxylase, biotin carboxylase  63 
 
 
664 aa  716    Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0475  carbamoyl-phosphate synthase L chain, ATP-binding  78.14 
 
 
670 aa  1027    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0116  Carbamoyl-phosphate synthase L chain ATP-binding  60.35 
 
 
674 aa  744    Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03803  biotin carboxylase  56.02 
 
 
675 aa  652    Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3830  carbamoyl-phosphate synthase L chain, ATP-binding  74.38 
 
 
674 aa  946    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0751  Carbamoyl-phosphate synthase L chain ATP-binding  58.53 
 
 
667 aa  673    Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_3040  Carbamoyl-phosphate synthase L chain ATP-binding  100 
 
 
672 aa  1372    Acidovorax ebreus TPSY  Bacteria  normal  0.233889  n/a   
 
 
-
 
NC_010623  Bphy_3559  carbamoyl-phosphate synthase L chain ATP-binding  58.74 
 
 
670 aa  708    Burkholderia phymatum STM815  Bacteria  normal  normal  0.733851 
 
 
-
 
NC_007948  Bpro_4157  3-methylcrotonoyl-CoA carboxylase, alpha subunit  79.4 
 
 
663 aa  1036    Polaromonas sp. JS666  Bacteria  normal  0.825758  normal 
 
 
-
 
NC_010002  Daci_5970  carbamoyl-phosphate synthase L chain ATP-binding  81.1 
 
 
672 aa  1024    Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_2064  carbamoyl-phosphate synthase L chain, ATP-binding  61.48 
 
 
700 aa  826    Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0963  3-methylcrotonoyl-CoA carboxylase, alpha subunit  59.37 
 
 
679 aa  714    Burkholderia xenovorans LB400  Bacteria  normal  normal  0.5845 
 
 
-
 
NC_012791  Vapar_4719  Carbamoyl-phosphate synthase L chain ATP-binding  74.4 
 
 
667 aa  941    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0342  carbamoyl-phosphate synthase L chain, ATP-binding  59.92 
 
 
704 aa  815    Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0608  3-methylcrotonoyl-CoA carboxylase, subunit alpha  63.02 
 
 
679 aa  769    Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00695575  normal  0.371744 
 
 
-
 
NC_008543  Bcen2424_5237  carbamoyl-phosphate synthase L chain, ATP-binding  63.41 
 
 
665 aa  753    Burkholderia cenocepacia HI2424  Bacteria  normal  0.578975  normal  0.758885 
 
 
-
 
NC_010086  Bmul_3469  carbamoyl-phosphate synthase L chain ATP-binding  63.11 
 
 
670 aa  754    Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0123  Carbamoyl-phosphate synthase L chain ATP-binding  60.65 
 
 
674 aa  746    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3130  carbamoyl-phosphate synthase L chain, ATP-binding  63.41 
 
 
665 aa  753    Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3356  3-methylcrotonoyl-CoA carboxylase, alpha subunit  66.57 
 
 
672 aa  827    Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.782884 
 
 
-
 
NC_009075  BURPS668_A2053  putative acetyl-CoA carboxylase, biotin carboxylase  62.67 
 
 
666 aa  709    Burkholderia pseudomallei 668  Bacteria  normal  0.698368  n/a   
 
 
-
 
NC_010524  Lcho_2116  carbamoyl-phosphate synthase L chain ATP-binding  65.62 
 
 
692 aa  820    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.278717 
 
 
-
 
NC_008391  Bamb_4585  carbamoyl-phosphate synthase L chain, ATP-binding  62.72 
 
 
666 aa  738    Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.747689 
 
 
-
 
NC_003910  CPS_1600  methylcrotonyl-CoA carboxylase, alpha subunit  49.13 
 
 
681 aa  616  1e-175  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0015  biotin carboxylase  54.51 
 
 
673 aa  615  1e-175  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0018  biotin carboxylase  54.51 
 
 
673 aa  615  9.999999999999999e-175  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1359  3-methylcrotonyl-CoA carboxylase alpha subunit  51.4 
 
 
673 aa  612  9.999999999999999e-175  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.812437 
 
 
-
 
NC_008044  TM1040_0738  3-methylcrotonoyl-CoA carboxylase, alpha subunit  53.55 
 
 
645 aa  612  9.999999999999999e-175  Ruegeria sp. TM1040  Bacteria  normal  0.623779  normal 
 
 
-
 
NC_009665  Shew185_2849  carbamoyl-phosphate synthase L chain ATP-binding  50.22 
 
 
686 aa  606  9.999999999999999e-173  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2976  carbamoyl-phosphate synthase L chain ATP-binding  50.07 
 
 
680 aa  604  1.0000000000000001e-171  Shewanella baltica OS195  Bacteria  normal  normal  0.870775 
 
 
-
 
NC_007493  RSP_2509  3-methylcrotonoyl-CoA carboxylase, alpha subunit  54.26 
 
 
646 aa  605  1.0000000000000001e-171  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.509464  n/a   
 
 
-
 
NC_009092  Shew_2573  carbamoyl-phosphate synthase L chain, ATP-binding  48.98 
 
 
677 aa  604  1.0000000000000001e-171  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0039  carbamoyl-phosphate synthase L chain ATP-binding  53.54 
 
 
655 aa  603  1.0000000000000001e-171  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.540073  n/a   
 
 
-
 
NC_011138  MADE_02415  methylcrotonyl-CoA carboxylase, alpha subunit  48.97 
 
 
666 aa  603  1.0000000000000001e-171  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1527  Carbamoyl-phosphate synthase L chain ATP-binding  50.07 
 
 
685 aa  603  1.0000000000000001e-171  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_2831  carbamoyl-phosphate synthase L chain ATP-binding  49.93 
 
 
680 aa  602  1.0000000000000001e-171  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2325  3-methylcrotonoyl-CoA carboxylase, alpha subunit  49.56 
 
 
679 aa  604  1.0000000000000001e-171  Shewanella sp. MR-4  Bacteria  normal  normal  0.676879 
 
 
-
 
NC_008322  Shewmr7_2397  3-methylcrotonoyl-CoA carboxylase, alpha subunit  49.41 
 
 
679 aa  603  1.0000000000000001e-171  Shewanella sp. MR-7  Bacteria  normal  0.63603  normal  0.616301 
 
 
-
 
NC_009049  Rsph17029_1171  carbamoyl-phosphate synthase L chain, ATP-binding  53.96 
 
 
646 aa  599  1e-170  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.42621  normal 
 
 
-
 
NC_008577  Shewana3_1669  3-methylcrotonoyl-CoA carboxylase, alpha subunit  49.12 
 
 
674 aa  598  1e-169  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1147  3-methylcrotonoyl-CoA carboxylase, alpha subunit  53.24 
 
 
667 aa  597  1e-169  Jannaschia sp. CCS1  Bacteria  normal  normal  0.221564 
 
 
-
 
NC_010117  COXBURSA331_A0962  biotin carboxylase  47.89 
 
 
661 aa  594  1e-168  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1070  methylcrotonyl-CoA carboxylase biotin-containing subunit  47.89 
 
 
661 aa  595  1e-168  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1716  carbamoyl-phosphate synthase L chain, ATP-binding  48.76 
 
 
689 aa  590  1e-167  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1855  carbamoyl-phosphate synthase L chain ATP-binding  52.14 
 
 
666 aa  590  1e-167  Xanthobacter autotrophicus Py2  Bacteria  normal  0.181486  normal 
 
 
-
 
NC_009428  Rsph17025_2010  carbamoyl-phosphate synthase L chain, ATP-binding  53.41 
 
 
646 aa  592  1e-167  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2736  biotin carboxylase/biotin-containing subunit  49.4 
 
 
649 aa  585  1e-166  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4535  carbamoyl-phosphate synthase L chain ATP-binding  51.34 
 
 
662 aa  587  1e-166  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2730  carbamoyl-phosphate synthase L chain, ATP-binding  49.64 
 
 
676 aa  586  1e-166  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1894  acetyl-CoA carboxylase, biotin carboxylase, putative  48.91 
 
 
694 aa  584  1.0000000000000001e-165  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2467  carbamoyl-phosphate synthase subunit L  49.26 
 
 
649 aa  584  1.0000000000000001e-165  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.30197  normal  0.0144387 
 
 
-
 
NC_009831  Ssed_1455  carbamoyl-phosphate synthase L chain, ATP-binding  46.91 
 
 
691 aa  580  1e-164  Shewanella sediminis HAW-EB3  Bacteria  normal  0.419117  normal 
 
 
-
 
NC_009439  Pmen_2030  3-methylcrotonoyl-CoA carboxylase, alpha subunit  50.15 
 
 
644 aa  581  1e-164  Pseudomonas mendocina ymp  Bacteria  normal  0.0317693  normal  0.435789 
 
 
-
 
NC_007954  Sden_2248  carbamoyl-phosphate synthase L chain, ATP-binding  47.94 
 
 
697 aa  580  1e-164  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2316  carbamoyl-phosphate synthase L chain ATP-binding  51.86 
 
 
662 aa  579  1e-164  Methylobacterium sp. 4-46  Bacteria  normal  0.0459588  normal  0.101585 
 
 
-
 
NC_008228  Patl_2928  carbamoyl-phosphate synthase L chain, ATP-binding  47.28 
 
 
675 aa  580  1e-164  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.321789  n/a   
 
 
-
 
NC_009901  Spea_2800  carbamoyl-phosphate synthase L chain ATP-binding  46.8 
 
 
696 aa  578  1.0000000000000001e-163  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000380  methylcrotonyl-CoA carboxylase biotin-containing subunit  46.84 
 
 
686 aa  575  1.0000000000000001e-163  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3151  carbamoyl-phosphate synthase L chain ATP-binding  51.01 
 
 
657 aa  574  1.0000000000000001e-162  Caulobacter sp. K31  Bacteria  normal  normal  0.111688 
 
 
-
 
NC_008463  PA14_38480  alpha subunit of geranoyl-CoA carboxylase, GnyA  50.89 
 
 
655 aa  575  1.0000000000000001e-162  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1774  carbamoyl-phosphate synthase L chain, ATP-binding  50.22 
 
 
650 aa  569  1e-161  Pseudomonas putida F1  Bacteria  hitchhiker  0.00809985  hitchhiker  0.00202818 
 
 
-
 
NC_009656  PSPA7_3277  alpha subunit of geranoyl-CoA carboxylase, GnyA  50.22 
 
 
655 aa  570  1e-161  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_49520  acetyl-CoA carboxylase, biotin carboxylase  50.51 
 
 
658 aa  565  1e-160  Azotobacter vinelandii DJ  Bacteria  normal  0.296412  n/a   
 
 
-
 
NC_010506  Swoo_3226  carbamoyl-phosphate synthase L chain ATP-binding  46.42 
 
 
709 aa  566  1e-160  Shewanella woodyi ATCC 51908  Bacteria  normal  0.835408  normal  0.018356 
 
 
-
 
NC_011004  Rpal_2809  Carbamoyl-phosphate synthase L chain ATP-binding  48.6 
 
 
670 aa  565  1e-160  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.978814  n/a   
 
 
-
 
NC_010501  PputW619_1809  carbamoyl-phosphate synthase L chain ATP-binding  50.07 
 
 
650 aa  566  1e-160  Pseudomonas putida W619  Bacteria  normal  normal  0.202229 
 
 
-
 
NC_010322  PputGB1_3665  carbamoyl-phosphate synthase L chain ATP-binding  50 
 
 
650 aa  567  1e-160  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.000243321  hitchhiker  0.000000000183935 
 
 
-
 
NC_002947  PP_4067  acetyl-CoA carboxylase, biotin carboxylase, putative  50.22 
 
 
650 aa  563  1.0000000000000001e-159  Pseudomonas putida KT2440  Bacteria  normal  0.544109  unclonable  0.000000957509 
 
 
-
 
NC_007492  Pfl01_3659  3-methylcrotonoyl-CoA carboxylase, alpha subunit  49.63 
 
 
649 aa  563  1.0000000000000001e-159  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.00262153  normal  0.0752572 
 
 
-
 
NC_008687  Pden_3639  carbamoyl-phosphate synthase L chain, ATP-binding  52.34 
 
 
642 aa  563  1.0000000000000001e-159  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1793  hypothetical protein  44.73 
 
 
654 aa  557  1e-157  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008347  Mmar10_1727  carbamoyl-phosphate synthase L chain, ATP-binding  50.87 
 
 
667 aa  558  1e-157  Maricaulis maris MCS10  Bacteria  normal  0.807685  normal  0.290764 
 
 
-
 
NC_006368  lpp1792  hypothetical protein  44.43 
 
 
654 aa  554  1e-156  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007778  RPB_2933  carbamoyl-phosphate synthase L chain, ATP-binding  48.21 
 
 
671 aa  548  1e-155  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4048  putative acyl-CoA carboxylase biotin-carrying subunit  48.35 
 
 
670 aa  551  1e-155  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.139435  normal  0.287749 
 
 
-
 
NC_009719  Plav_2788  carbamoyl-phosphate synthase L chain ATP-binding  49.93 
 
 
673 aa  546  1e-154  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.683073  normal  0.298513 
 
 
-
 
NC_009439  Pmen_2694  carbamoyl-phosphate synthase L chain, ATP-binding  47.42 
 
 
661 aa  548  1e-154  Pseudomonas mendocina ymp  Bacteria  normal  0.250479  normal  0.322946 
 
 
-
 
NC_007964  Nham_2124  carbamoyl-phosphate synthase L chain, ATP-binding  47.83 
 
 
666 aa  545  1e-154  Nitrobacter hamburgensis X14  Bacteria  normal  0.494302  n/a   
 
 
-
 
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