More than 300 homologs were found in PanDaTox collection
for query gene Dshi_4118 on replicon NC_009958
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009958  Dshi_4118  glucose-1-phosphate thymidylyltransferase  100 
 
 
290 aa  589  1e-167  Dinoroseobacter shibae DFL 12  Bacteria  decreased coverage  0.00952178  normal 
 
 
-
 
NC_008042  TM1040_3859  glucose-1-phosphate thymidylyltransferase  79.93 
 
 
290 aa  479  1e-134  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2119  glucose-1-phosphate thymidylyltransferase  76.74 
 
 
300 aa  464  9.999999999999999e-131  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3841  glucose-1-phosphate thymidylyltransferase  79.43 
 
 
290 aa  461  1e-129  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009040  Rsph17029_4076  glucose-1-phosphate thymidylyltransferase  73.01 
 
 
296 aa  453  1.0000000000000001e-126  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0532179  normal  0.23652 
 
 
-
 
NC_009007  RSP_3848  glucose-1-phosphate thymidylyltransferase  73.01 
 
 
296 aa  453  1.0000000000000001e-126  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0504  glucose-1-phosphate thymidylyltransferase  64.93 
 
 
295 aa  390  1e-107  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0219924  normal  0.028839 
 
 
-
 
CP001509  ECD_01945  glucose-1-phosphate thymidylyltransferase  62.41 
 
 
292 aa  384  1e-106  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_03170  glucose-1-phosphate thymidylyltransferase  64.58 
 
 
295 aa  384  1e-106  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1277  glucose-1-phosphate thymidylyltransferase  62.37 
 
 
296 aa  385  1e-106  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0539  glucose-1-phosphate thymidylyltransferase  62.07 
 
 
294 aa  383  1e-105  Acidovorax sp. JS42  Bacteria  normal  0.911631  normal  0.057049 
 
 
-
 
NC_007298  Daro_1238  glucose-1-phosphate thymidylyltransferase  60.9 
 
 
296 aa  378  1e-104  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.981269 
 
 
-
 
NC_009801  EcE24377A_2330  glucose-1-phosphate thymidylyltransferase  61.72 
 
 
292 aa  379  1e-104  Escherichia coli E24377A  Bacteria  normal  0.0550352  n/a   
 
 
-
 
NC_010468  EcolC_1603  glucose-1-phosphate thymidylyltransferase  61.38 
 
 
292 aa  379  1e-104  Escherichia coli ATCC 8739  Bacteria  normal  0.982513  normal 
 
 
-
 
NC_007794  Saro_3238  glucose-1-phosphate thymidylyltransferase  63.19 
 
 
301 aa  379  1e-104  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0555  glucose-1-phosphate thymidylyltransferase  62.72 
 
 
296 aa  379  1e-104  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1618  glucose-1-phosphate thymidylyltransferase  61.38 
 
 
293 aa  376  1e-103  Escherichia coli DH1  Bacteria  normal  0.0952229  n/a   
 
 
-
 
NC_007516  Syncc9605_2032  glucose-1-phosphate thymidylyltransferase  61.94 
 
 
312 aa  375  1e-103  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_0478  glucose-1-phosphate thymidylyltransferase  61.81 
 
 
293 aa  374  1e-103  Geobacter lovleyi SZ  Bacteria  normal  0.543511  n/a   
 
 
-
 
NC_010658  SbBS512_E1194  glucose-1-phosphate thymidylyltransferase  61.03 
 
 
292 aa  375  1e-103  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1395  glucose-1-phosphate thymidylyltransferase  60.21 
 
 
296 aa  371  1e-102  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_0196  glucose-1-phosphate thymidylyltransferase  62.15 
 
 
295 aa  374  1e-102  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2677  glucose-1-phosphate thymidylyltransferase  61.03 
 
 
292 aa  371  1e-102  Rhodoferax ferrireducens T118  Bacteria  normal  0.475432  n/a   
 
 
-
 
NC_011083  SeHA_C2321  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
294 aa  373  1e-102  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  decreased coverage  0.00736153 
 
 
-
 
NC_011205  SeD_A2435  glucose-1-phosphate thymidylyltransferase  60.34 
 
 
294 aa  371  1e-102  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.0000704371 
 
 
-
 
NC_011149  SeAg_B2220  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
294 aa  373  1e-102  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.281714  n/a   
 
 
-
 
NC_013173  Dbac_2558  glucose-1-phosphate thymidylyltransferase  58.62 
 
 
295 aa  373  1e-102  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0225  glucose-1-phosphate thymidylyltransferase  61.46 
 
 
295 aa  370  1e-101  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4290  glucose-1-phosphate thymidylyltransferase  60 
 
 
294 aa  369  1e-101  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4018  glucose-1-phosphate thymidylyltransferase  59.93 
 
 
305 aa  368  1e-101  Polaromonas sp. JS666  Bacteria  normal  normal  0.520137 
 
 
-
 
NC_012560  Avin_15940  glucose-1-phosphate thymidylyltransferase  60.98 
 
 
293 aa  370  1e-101  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2328  glucose-1-phosphate thymidylyltransferase  60.34 
 
 
294 aa  370  1e-101  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.196545 
 
 
-
 
NC_011080  SNSL254_A2277  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
294 aa  371  1e-101  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.000000187637 
 
 
-
 
NC_008825  Mpe_A0626  glucose-1-phosphate thymidylyltransferase  59.03 
 
 
294 aa  365  1e-100  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.353924 
 
 
-
 
NC_010531  Pnec_0279  glucose-1-phosphate thymidylyltransferase  59.38 
 
 
309 aa  367  1e-100  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.643202  normal 
 
 
-
 
NC_009436  Ent638_2652  glucose-1-phosphate thymidylyltransferase  59.66 
 
 
291 aa  364  1e-100  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_01934  hypothetical protein  63.7 
 
 
270 aa  365  1e-100  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3489  glucose-1-phosphate thymidylyltransferase  61.94 
 
 
295 aa  367  1e-100  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.374251 
 
 
-
 
NC_012791  Vapar_0754  glucose-1-phosphate thymidylyltransferase  60.76 
 
 
299 aa  364  1e-99  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4056  glucose-1-phosphate thymidylyltransferase  59.03 
 
 
296 aa  363  2e-99  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.340468 
 
 
-
 
NC_007514  Cag_0512  glucose-1-phosphate thymidylyltransferase, long form  60.07 
 
 
295 aa  363  2e-99  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0255  glucose-1-phosphate thymidylyltransferase  58.82 
 
 
309 aa  363  2e-99  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.201113  n/a   
 
 
-
 
NC_008340  Mlg_2319  glucose-1-phosphate thymidylyltransferase  59.72 
 
 
293 aa  363  2e-99  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.103885 
 
 
-
 
NC_010084  Bmul_2597  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
297 aa  363  2e-99  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_0637  glucose-1-phosphate thymidylyltransferase, long form  60.42 
 
 
310 aa  362  3e-99  Synechococcus sp. CC9902  Bacteria  normal  0.210198  n/a   
 
 
-
 
NC_010682  Rpic_0639  glucose-1-phosphate thymidylyltransferase  61.19 
 
 
294 aa  362  3e-99  Ralstonia pickettii 12J  Bacteria  normal  normal  0.477683 
 
 
-
 
NC_010551  BamMC406_0762  glucose-1-phosphate thymidylyltransferase  60.84 
 
 
297 aa  362  4e-99  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0752  glucose-1-phosphate thymidylyltransferase  61.54 
 
 
297 aa  362  4e-99  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2181  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
289 aa  362  4e-99  Escherichia coli HS  Bacteria  normal  0.112189  n/a   
 
 
-
 
NC_009831  Ssed_3013  glucose-1-phosphate thymidylyltransferase  61.25 
 
 
296 aa  362  5.0000000000000005e-99  Shewanella sediminis HAW-EB3  Bacteria  normal  0.515318  hitchhiker  0.00164401 
 
 
-
 
NC_010524  Lcho_0621  glucose-1-phosphate thymidylyltransferase  59.72 
 
 
293 aa  362  5.0000000000000005e-99  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.252794 
 
 
-
 
NC_007005  Psyr_0924  glucose-1-phosphate thymidylyltransferase, long form  59.23 
 
 
293 aa  360  1e-98  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.390731 
 
 
-
 
NC_007952  Bxe_B1715  glucose-1-phosphate thymidylyltransferase  60.84 
 
 
297 aa  360  1e-98  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.703429 
 
 
-
 
NC_008576  Mmc1_1406  glucose-1-phosphate thymidylyltransferase  61.21 
 
 
290 aa  361  1e-98  Magnetococcus sp. MC-1  Bacteria  normal  0.0680028  normal 
 
 
-
 
NC_008752  Aave_4164  glucose-1-phosphate thymidylyltransferase  60.55 
 
 
291 aa  360  1e-98  Acidovorax citrulli AAC00-1  Bacteria  normal  0.375509  normal  0.0599581 
 
 
-
 
NC_010816  BLD_1570  dTDP-glucose pyrophosphorylase  62.28 
 
 
298 aa  360  2e-98  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2458  glucose-1-phosphate thymidylyltransferase  61.57 
 
 
291 aa  360  2e-98  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008544  Bcen2424_6649  glucose-1-phosphate thymidylyltransferase  60.28 
 
 
298 aa  360  2e-98  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_3810  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
292 aa  359  3e-98  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4134  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
293 aa  359  4e-98  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.886764  normal 
 
 
-
 
NC_010622  Bphy_2318  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
297 aa  358  4e-98  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_004578  PSPTO_1079  glucose-1-phosphate thymidylyltransferase  58.19 
 
 
296 aa  358  5e-98  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.857116  n/a   
 
 
-
 
NC_008060  Bcen_0390  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
297 aa  358  5e-98  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0879  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
297 aa  358  5e-98  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03667  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
293 aa  358  6e-98  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4187  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
293 aa  358  6e-98  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4300  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
293 aa  358  6e-98  Escherichia coli E24377A  Bacteria  normal  0.671584  n/a   
 
 
-
 
NC_011891  A2cp1_4445  glucose-1-phosphate thymidylyltransferase  60.55 
 
 
294 aa  358  6e-98  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03616  hypothetical protein  60.49 
 
 
293 aa  358  6e-98  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4153  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
293 aa  358  6e-98  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4132  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
293 aa  358  6e-98  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6247  glucose-1-phosphate thymidylyltransferase  59.93 
 
 
298 aa  358  6e-98  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0385422  normal  0.992107 
 
 
-
 
NC_009800  EcHS_A4006  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
293 aa  358  6e-98  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4214  glucose-1-phosphate thymidylyltransferase  60.49 
 
 
293 aa  358  6e-98  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3556  glucose-1-phosphate thymidylyltransferase  60.84 
 
 
294 aa  358  7e-98  Xanthobacter autotrophicus Py2  Bacteria  normal  0.305082  normal  0.867096 
 
 
-
 
NC_002947  PP_1783  glucose-1-phosphate thymidylyltransferase  59.58 
 
 
293 aa  357  9e-98  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00712451 
 
 
-
 
NC_011761  AFE_3295  glucose-1-phosphate thymidylyltransferase  59.03 
 
 
294 aa  357  9e-98  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  unclonable  0.00238421  n/a   
 
 
-
 
NC_011206  Lferr_2893  glucose-1-phosphate thymidylyltransferase  59.03 
 
 
294 aa  357  9e-98  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.413887 
 
 
-
 
NC_007347  Reut_A0714  glucose-1-phosphate thymidylyltransferase  59.17 
 
 
295 aa  357  9.999999999999999e-98  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2101  glucose-1-phosphate thymidylyltransferase  59.66 
 
 
294 aa  357  9.999999999999999e-98  Synechococcus elongatus PCC 7942  Bacteria  normal  0.338319  normal 
 
 
-
 
NC_009512  Pput_3933  glucose-1-phosphate thymidylyltransferase  58.54 
 
 
296 aa  357  9.999999999999999e-98  Pseudomonas putida F1  Bacteria  normal  0.527502  normal  0.192647 
 
 
-
 
NC_012917  PC1_1299  glucose-1-phosphate thymidylyltransferase  59.44 
 
 
291 aa  357  9.999999999999999e-98  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0872  glucose-1-phosphate thymidylyltransferase  59.44 
 
 
297 aa  357  9.999999999999999e-98  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0838  glucose-1-phosphate thymidylyltransferase  60 
 
 
293 aa  357  9.999999999999999e-98  Marinomonas sp. MWYL1  Bacteria  normal  0.22071  normal 
 
 
-
 
NC_011769  DvMF_1381  glucose-1-phosphate thymidylyltransferase  61.19 
 
 
292 aa  357  1.9999999999999998e-97  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013522  Taci_1619  glucose-1-phosphate thymidylyltransferase  57.89 
 
 
295 aa  356  1.9999999999999998e-97  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0684  glucose-1-phosphate thymidylyltransferase protein  60.49 
 
 
292 aa  356  2.9999999999999997e-97  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_3162  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
312 aa  356  2.9999999999999997e-97  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0696  glucose-1-phosphate thymidylyltransferase  58.82 
 
 
294 aa  356  2.9999999999999997e-97  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.53714  normal 
 
 
-
 
NC_013456  VEA_001807  glucose-1-phosphate thymidylyltransferase  60 
 
 
293 aa  356  2.9999999999999997e-97  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1470  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
312 aa  355  2.9999999999999997e-97  Burkholderia thailandensis E264  Bacteria  normal  0.759037  n/a   
 
 
-
 
NC_008463  PA14_68200  glucose-1-phosphate thymidylyltransferase  59.23 
 
 
293 aa  356  2.9999999999999997e-97  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0399407 
 
 
-
 
NC_007947  Mfla_2009  glucose-1-phosphate thymidylyltransferase  59.23 
 
 
292 aa  355  3.9999999999999996e-97  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0843  glucose-1-phosphate thymidylyltransferase  59.44 
 
 
297 aa  355  3.9999999999999996e-97  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0237145 
 
 
-
 
NC_009080  BMA10247_1851  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
297 aa  355  5e-97  Burkholderia mallei NCTC 10247  Bacteria  normal  0.530858  n/a   
 
 
-
 
NC_008836  BMA10229_A2754  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
297 aa  355  5e-97  Burkholderia mallei NCTC 10229  Bacteria  normal  0.119435  n/a   
 
 
-
 
NC_011353  ECH74115_5222  glucose-1-phosphate thymidylyltransferase  60.14 
 
 
293 aa  355  5e-97  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.350144  normal 
 
 
-
 
NC_012850  Rleg_1270  glucose-1-phosphate thymidylyltransferase  60.92 
 
 
289 aa  355  5e-97  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.106852  normal  0.0645307 
 
 
-
 
NC_009074  BURPS668_3103  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
297 aa  355  5e-97  Burkholderia pseudomallei 668  Bacteria  normal  0.0791129  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0924  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
297 aa  355  5e-97  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
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