20 homologs were found in PanDaTox collection
for query gene Dshi_3989 on replicon NC_009957
Organism: Dinoroseobacter shibae DFL 12



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009957  Dshi_3989  relaxase/mobilization nuclease family protein  100 
 
 		 777 aa  1555    Dinoroseobacter shibae DFL 12  Bacteria  normal  1  n/a   
 
 
-
 
NC_009955  Dshi_3656  relaxase/mobilization nuclease family protein  92.54 
 
 		 777 aa  1438    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0486452  decreased coverage  0.000000302342 
 
 
-
 
NC_008042  TM1040_3793  relaxase/mobilization nuclease domain-containing protein  79.18 
 
 		 736 aa  1173    Ruegeria sp. TM1040  Bacteria  decreased coverage  0.00267002  normal  1 
 
 
-
 
NC_011982  Avi_8212  type IV secretion system T-DNA border endonuclease VirD2  34.22 
 
 		 403 aa  98.2  5e-19  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009432  Rsph17025_4359  relaxase/mobilization nuclease family protein  31.94 
 
 		 400 aa  60.1  0.0000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.738974 
 
 
-
 
NC_007951  Bxe_A2643  putative DNA relaxase/nickase, TraS/VirD2- like  27.55 
 
 		 337 aa  52.8  0.00003  Burkholderia xenovorans LB400  Bacteria  normal  0.214976  normal  1 
 
 
-
 
NC_008060  Bcen_0308  plasmid-related protein  25 
 
 		 344 aa  50.4  0.0001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.518221  n/a   
 
 
-
 
NC_008542  Bcen2424_0791  plasmid-related protein  25 
 
 		 344 aa  50.4  0.0001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.435871  n/a   
 
 
-
 
NC_009475  BBta_p0017  hypothetical protein  27.46 
 
 		 344 aa  48.9  0.0004  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal  0.125294 
 
 
-
 
NC_007953  Bxe_C0462  putative DNA relaxase/nickase, TraS/VirD2-like  25.77 
 
 		 349 aa  48.1  0.0006  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A1768  putative DNA relaxase/nickase, TraS/VirD2-like  26.55 
 
 		 337 aa  48.1  0.0006  Burkholderia xenovorans LB400  Bacteria  normal  0.330763  normal  0.546869 
 
 
-
 
NC_009508  Swit_4977  hypothetical protein  31.53 
 
 		 377 aa  48.1  0.0007  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010508  Bcenmc03_0760  putative DNA relaxase/nickase, TraS/VirD2-like protein  26.22 
 
 		 344 aa  47.8  0.0008  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008061  Bcen_4839  plasmid-related protein  27.22 
 
 		 351 aa  47.4  0.001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.658809  n/a   
 
 
-
 
NC_008543  Bcen2424_3327  plasmid-related protein  27.22 
 
 		 351 aa  47.4  0.001  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  0.828723 
 
 
-
 
NC_010515  Bcenmc03_4188  putative DNA relaxase/nickase, TraS/VirD2-like protein  27.22 
 
 		 351 aa  47  0.001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.730341  normal  1 
 
 
-
 
NC_010676  Bphyt_6491  putative DNA relaxase/nickase, TraS/VirD2-like protein  33.64 
 
 		 337 aa  46.6  0.002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.440209  normal  0.634473 
 
 
-
 
NC_007959  Nham_4269  hypothetical protein  25.44 
 
 		 776 aa  45.8  0.003  Nitrobacter hamburgensis X14  Bacteria  normal  0.516015  n/a   
 
 
-
 
NC_002950  PG0868  mobilization protein  31.4 
 
 		 307 aa  45.4  0.004  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.024127 
 
 
-
 
NC_009508  Swit_4934  relaxase/mobilization nuclease family protein  29.51 
 
 		 368 aa  44.3  0.009  Sphingomonas wittichii RW1  Bacteria  normal  0.421912  normal  0.821482 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>