36 homologs were found in PanDaTox collection
for query gene Dshi_3828 on replicon NC_009956
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009956  Dshi_3828  PaaX family transcriptional regulator  100 
 
 		 264 aa  520  1e-147  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.648927  normal  1 
 
 
-
 
NC_008044  TM1040_0436  PaaX-like  36.43 
 
 		 301 aa  142  5e-33  Ruegeria sp. TM1040  Bacteria  normal  1  normal  0.581976 
 
 
-
 
NC_007802  Jann_0659  PaaX-like  33.48 
 
 		 265 aa  103  3e-21  Jannaschia sp. CCS1  Bacteria  normal  0.702789  normal  1 
 
 
-
 
NC_009720  Xaut_0895  PaaX family transcriptional regulator  31.2 
 
 		 305 aa  91.3  2e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  0.947925  normal  1 
 
 
-
 
NC_009512  Pput_2473  PaaX family transcriptional regulator  27.34 
 
 		 334 aa  86.3  4e-16  Pseudomonas putida F1  Bacteria  normal  0.303711  normal  1 
 
 
-
 
NC_002947  PP_3286  PaaX family transcriptional regulator  26.98 
 
 		 307 aa  84.7  0.000000000000001  Pseudomonas putida KT2440  Bacteria  normal  0.17765  normal  1 
 
 
-
 
NC_010322  PputGB1_2610  PaaX family transcriptional regulator  26.98 
 
 		 334 aa  80.9  0.00000000000002  Pseudomonas putida GB-1  Bacteria  normal  0.218497  normal  0.0704814 
 
 
-
 
NC_009832  Spro_3083  PaaX family transcriptional regulator  27.56 
 
 		 312 aa  79.7  0.00000000000004  Serratia proteamaculans 568  Bacteria  normal  1  normal  0.415086 
 
 
-
 
NC_010468  EcolC_2256  PaaX family transcriptional regulator  28.46 
 
 		 316 aa  78.2  0.0000000000001  Escherichia coli ATCC 8739  Bacteria  normal  0.203735  normal  1 
 
 
-
 
NC_009800  EcHS_A1486  phenylacetic acid degradation operon negative regulatory protein PaaX  28.46 
 
 		 316 aa  78.2  0.0000000000001  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_2246  transcriptional regulator, PaaX family  28.46 
 
 		 316 aa  77.8  0.0000000000002  Escherichia coli DH1  Bacteria  normal  0.218129  n/a   
 
 
-
 
NC_009485  BBta_2864  phenylacetic acid degradation operon negative regulatory protein paaX  27.53 
 
 		 293 aa  76.6  0.0000000000004  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00499823  normal  0.0484276 
 
 
-
 
NC_009801  EcE24377A_1585  phenylacetic acid degradation operon negative regulatory protein PaaX  27.56 
 
 		 316 aa  76.3  0.0000000000005  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_007348  Reut_B3734  phenylacetic acid degradation operon negative regulatory protein PaaX  27.6 
 
 		 307 aa  73.9  0.000000000002  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_2623  PaaX family transcriptional regulator  25.1 
 
 		 334 aa  73.9  0.000000000003  Pseudomonas putida W619  Bacteria  normal  0.312733  normal  0.0873289 
 
 
-
 
NC_008709  Ping_0661  PaaX domain-containing protein, C- domain  24.18 
 
 		 285 aa  70.9  0.00000000002  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_0386  phenylacetic acid degradation operon negative regulatory protein PaaX  27.34 
 
 		 352 aa  70.9  0.00000000002  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000187716  normal  0.0170462 
 
 
-
 
NC_011894  Mnod_7200  transcriptional regulator, PaaX family  33.47 
 
 		 292 aa  68.6  0.00000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.803046  n/a   
 
 
-
 
NC_009654  Mmwyl1_3103  PaaX family transcriptional regulator  24.9 
 
 		 307 aa  68.6  0.0000000001  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.000000661945  decreased coverage  0.0000397547 
 
 
-
 
NC_011662  Tmz1t_0196  transcriptional regulator, PaaX family  28.85 
 
 		 319 aa  65.1  0.000000001  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_011662  Tmz1t_1514  transcriptional regulator, PaaX family  28.08 
 
 		 316 aa  63.5  0.000000003  Thauera sp. MZ1T  Bacteria  normal  0.139923  n/a   
 
 
-
 
NC_010506  Swoo_0216  PaaX family transcriptional regulator  24.19 
 
 		 311 aa  63.2  0.000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.0165647 
 
 
-
 
NC_007925  RPC_0692  phenylacetic acid degradation operon negative regulatory protein PaaX  26.38 
 
 		 287 aa  62.4  0.000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.717402  normal  1 
 
 
-
 
NC_009484  Acry_0094  PaaX family transcriptional regulator  28.39 
 
 		 289 aa  61.6  0.00000001  Acidiphilium cryptum JF-5  Bacteria  normal  0.339453  n/a   
 
 
-
 
NC_007958  RPD_1521  phenylacetic acid degradation operon negative regulatory protein PaaX  26.06 
 
 		 312 aa  60.8  0.00000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013411  GYMC61_2859  transcriptional regulator, PaaX family  23.65 
 
 		 285 aa  60.1  0.00000004  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009620  Smed_4146  PaaX family transcriptional regulator  27.69 
 
 		 305 aa  59.7  0.00000004  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.85173 
 
 
-
 
NC_011894  Mnod_3357  transcriptional regulator, PaaX family  27.12 
 
 		 301 aa  57.8  0.0000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_009380  Strop_0708  PaaX family transcriptional regulator  27.92 
 
 		 272 aa  57  0.0000003  Salinispora tropica CNB-440  Bacteria  normal  0.719013  normal  0.640912 
 
 
-
 
NC_013131  Caci_2009  transcriptional regulator, PaaX family  28.05 
 
 		 281 aa  53.1  0.000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.429433  normal  1 
 
 
-
 
NC_009953  Sare_0655  PaaX family transcriptional regulator  26.8 
 
 		 272 aa  51.6  0.00001  Salinispora arenicola CNS-205  Bacteria  normal  0.0748596  hitchhiker  0.00291671 
 
 
-
 
NC_013093  Amir_0787  transcriptional regulator, PaaX family  27.71 
 
 		 268 aa  51.2  0.00002  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_8420  putative transcriptional regulator, PaaX family  24.19 
 
 		 260 aa  46.6  0.0004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.289328  normal  1 
 
 
-
 
NC_014151  Cfla_0294  transcriptional regulator, PaaX family  34 
 
 		 318 aa  43.9  0.002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0429653  hitchhiker  0.0000864342 
 
 
-
 
NC_013947  Snas_6455  transcriptional regulator, PaaX family  25 
 
 		 260 aa  42.4  0.007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014212  Mesil_0980  transcriptional regulator, PaaX family  25.31 
 
 		 259 aa  42.4  0.007  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.148761 
 
 
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