More than 300 homologs were found in PanDaTox collection
for query gene Dshi_2345 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009952  Dshi_2345  two component transcriptional regulator  100 
 
 		 220 aa  444  1.0000000000000001e-124  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.499423  normal  0.134206 
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  71.36 
 
 		 233 aa  313  9.999999999999999e-85  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  52.74 
 
 		 213 aa  215  5e-55  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  52.74 
 
 		 213 aa  215  5e-55  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  48.1 
 
 		 214 aa  208  4e-53  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.139442 
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  46.83 
 
 		 223 aa  204  1e-51  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.658241 
 
 
-
 
NC_009667  Oant_0443  two component LuxR family transcriptional regulator  51.74 
 
 		 213 aa  199  3e-50  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  47.09 
 
 		 206 aa  198  6e-50  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  46.34 
 
 		 215 aa  197  7e-50  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  45.1 
 
 		 215 aa  197  7.999999999999999e-50  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  46.7 
 
 		 217 aa  184  1.0000000000000001e-45  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  44.5 
 
 		 213 aa  182  2.0000000000000003e-45  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  45.05 
 
 		 206 aa  182  4.0000000000000006e-45  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  43.58 
 
 		 216 aa  180  1e-44  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  45.37 
 
 		 212 aa  176  3e-43  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  41.9 
 
 		 216 aa  170  2e-41  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  45.15 
 
 		 213 aa  168  7e-41  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  42.08 
 
 		 206 aa  167  9e-41  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_008255  CHU_1317  response regulator  37.44 
 
 		 220 aa  167  1e-40  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  42.92 
 
 		 215 aa  167  2e-40  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  42.92 
 
 		 215 aa  167  2e-40  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  42.92 
 
 		 215 aa  167  2e-40  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  42.92 
 
 		 215 aa  167  2e-40  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  42.92 
 
 		 215 aa  167  2e-40  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  40.28 
 
 		 219 aa  166  2.9999999999999998e-40  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  42.45 
 
 		 215 aa  164  6.9999999999999995e-40  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  43.94 
 
 		 214 aa  164  8e-40  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  41.98 
 
 		 215 aa  164  9e-40  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  43.81 
 
 		 214 aa  164  1.0000000000000001e-39  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.0560765 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  43.81 
 
 		 214 aa  164  1.0000000000000001e-39  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  43.81 
 
 		 214 aa  164  1.0000000000000001e-39  Burkholderia cenocepacia HI2424  Bacteria  normal  1  hitchhiker  0.00685344 
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  43.56 
 
 		 213 aa  162  2.0000000000000002e-39  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.53826 
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  42.45 
 
 		 215 aa  162  3e-39  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  37.56 
 
 		 221 aa  162  5.0000000000000005e-39  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  43.33 
 
 		 214 aa  161  7e-39  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  41.23 
 
 		 212 aa  161  8.000000000000001e-39  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  43.33 
 
 		 214 aa  161  8.000000000000001e-39  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.0203352 
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  42.86 
 
 		 214 aa  160  2e-38  Burkholderia ambifaria MC40-6  Bacteria  normal  1  hitchhiker  0.00509748 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  38.03 
 
 		 218 aa  160  2e-38  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  39.81 
 
 		 214 aa  159  3e-38  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  40.48 
 
 		 214 aa  159  4e-38  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal  1 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  40.48 
 
 		 216 aa  156  2e-37  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  38.39 
 
 		 215 aa  156  3e-37  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_3186  two component LuxR family transcriptional regulator  42.86 
 
 		 214 aa  156  3e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.10411 
 
 
-
 
NC_010676  Bphyt_4476  two component transcriptional regulator, LuxR family  41.75 
 
 		 215 aa  155  5.0000000000000005e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  39.65 
 
 		 244 aa  154  1e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_007952  Bxe_B0788  two component LuxR family transcriptional regulator  41.75 
 
 		 218 aa  154  1e-36  Burkholderia xenovorans LB400  Bacteria  normal  0.3296  normal  1 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  38.28 
 
 		 212 aa  154  1e-36  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  37.85 
 
 		 217 aa  153  2e-36  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  36.67 
 
 		 223 aa  152  4e-36  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  38.39 
 
 		 222 aa  151  5.9999999999999996e-36  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  36.84 
 
 		 220 aa  151  5.9999999999999996e-36  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.929677 
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  38.57 
 
 		 217 aa  151  7e-36  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_3992  two component transcriptional regulator, LuxR family  42.25 
 
 		 214 aa  151  8.999999999999999e-36  Variovorax paradoxus S110  Bacteria  normal  0.82671  n/a   
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  36.23 
 
 		 207 aa  149  3e-35  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.126193 
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  39.07 
 
 		 217 aa  149  4e-35  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  39.07 
 
 		 217 aa  149  4e-35  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  37.67 
 
 		 221 aa  149  4e-35  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.0179337 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  38.94 
 
 		 211 aa  149  4e-35  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_3523  two component LuxR family transcriptional regulator  39.02 
 
 		 224 aa  149  4e-35  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  38.79 
 
 		 218 aa  148  6e-35  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  38.79 
 
 		 218 aa  148  6e-35  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  35.89 
 
 		 214 aa  147  1.0000000000000001e-34  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  40.76 
 
 		 231 aa  147  1.0000000000000001e-34  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  35.68 
 
 		 222 aa  146  2.0000000000000003e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_010338  Caul_2685  two component LuxR family transcriptional regulator  36.53 
 
 		 222 aa  146  2.0000000000000003e-34  Caulobacter sp. K31  Bacteria  normal  0.120511  normal  1 
 
 
-
 
NC_008609  Ppro_2713  two component LuxR family transcriptional regulator  35.92 
 
 		 208 aa  147  2.0000000000000003e-34  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  37.26 
 
 		 220 aa  145  3e-34  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  37.33 
 
 		 215 aa  146  3e-34  Mycobacterium sp. JLS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  38.57 
 
 		 226 aa  145  3e-34  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_009439  Pmen_1563  two component LuxR family transcriptional regulator  37.14 
 
 		 214 aa  145  3e-34  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.241819 
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  37.33 
 
 		 215 aa  146  3e-34  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  37.33 
 
 		 215 aa  146  3e-34  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_0083  two component LuxR family transcriptional regulator  41.5 
 
 		 210 aa  145  4.0000000000000006e-34  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  36.71 
 
 		 213 aa  144  7.0000000000000006e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  38.32 
 
 		 218 aa  144  8.000000000000001e-34  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  34.74 
 
 		 226 aa  144  9e-34  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  38.28 
 
 		 215 aa  144  1e-33  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  36.84 
 
 		 213 aa  144  1e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  37.67 
 
 		 219 aa  144  1e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.92254 
 
 
-
 
NC_013595  Sros_6032  response regulator receiver protein  37.85 
 
 		 218 aa  144  1e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.53611  normal  1 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  38.28 
 
 		 224 aa  143  3e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_2387  two component transcriptional regulator, LuxR family  36.59 
 
 		 207 aa  142  3e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.132486  normal  0.384012 
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  36.27 
 
 		 215 aa  142  4e-33  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal  1 
 
 
-
 
NC_013440  Hoch_1846  two component transcriptional regulator, LuxR family  37.32 
 
 		 212 aa  142  5e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.349565  normal  0.2019 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  38.97 
 
 		 217 aa  142  5e-33  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.482316 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  36.92 
 
 		 218 aa  142  6e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009483  Gura_2782  two component LuxR family transcriptional regulator  35.58 
 
 		 214 aa  142  6e-33  Geobacter uraniireducens Rf4  Bacteria  normal  0.834695  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  37.74 
 
 		 216 aa  140  9.999999999999999e-33  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  38.76 
 
 		 212 aa  140  9.999999999999999e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  34.76 
 
 		 217 aa  140  1.9999999999999998e-32  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  36.45 
 
 		 224 aa  139  1.9999999999999998e-32  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal  1 
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  36.57 
 
 		 220 aa  140  1.9999999999999998e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  35.98 
 
 		 219 aa  140  1.9999999999999998e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  37.5 
 
 		 218 aa  139  3e-32  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  35.85 
 
 		 216 aa  139  3e-32  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  33.02 
 
 		 223 aa  139  3e-32  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_012560  Avin_41040  Two-component response regulator, LuxR family  42.64 
 
 		 208 aa  139  3e-32  Azotobacter vinelandii DJ  Bacteria  normal  0.136918  n/a   
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  36.36 
 
 		 216 aa  139  3.9999999999999997e-32  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_013411  GYMC61_2911  two component transcriptional regulator, LuxR family  37.07 
 
 		 209 aa  139  3.9999999999999997e-32  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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