More than 300 homologs were found in PanDaTox collection
for query gene Dole_2199 on replicon NC_009943
Organism: Desulfococcus oleovorans Hxd3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009943  Dole_2199  cyclic nucleotide-binding protein  100 
 
 
357 aa  738    Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  29.71 
 
 
563 aa  77.4  0.0000000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  33.33 
 
 
225 aa  72  0.00000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_4027  cyclic nucleotide-binding protein  33.57 
 
 
413 aa  71.2  0.00000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0599  response regulator receiver protein  32.5 
 
 
488 aa  70.9  0.00000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0607  response regulator receiver protein  32.5 
 
 
488 aa  70.9  0.00000000004  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0572  response regulator receiver domain-containing protein  32.5 
 
 
488 aa  70.1  0.00000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3166  cyclic nucleotide-binding protein  29.01 
 
 
482 aa  68.6  0.0000000002  Roseiflexus sp. RS-1  Bacteria  decreased coverage  0.00363184  normal 
 
 
-
 
NC_007604  Synpcc7942_1814  cyclic nucleotide-binding domain-containing protein  30.08 
 
 
242 aa  66.6  0.0000000006  Synechococcus elongatus PCC 7942  Bacteria  normal  0.38579  normal  0.245711 
 
 
-
 
NC_009767  Rcas_2894  cyclic nucleotide-binding protein  28.89 
 
 
482 aa  66.2  0.0000000008  Roseiflexus castenholzii DSM 13941  Bacteria  decreased coverage  0.00660929  normal 
 
 
-
 
NC_009675  Anae109_0615  response regulator receiver protein  32.23 
 
 
485 aa  63.9  0.000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.17 
 
 
226 aa  63.9  0.000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_010623  Bphy_3626  cyclic nucleotide-regulated small mechanosensitive ion channel  27.78 
 
 
489 aa  63.2  0.000000006  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  26.32 
 
 
243 aa  63.2  0.000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_011884  Cyan7425_5091  MscS Mechanosensitive ion channel  28.4 
 
 
637 aa  62.8  0.000000009  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.00148956  normal  0.0183068 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  29.79 
 
 
230 aa  62  0.00000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0190  cyclic nucleotide-binding protein  29.6 
 
 
346 aa  61.2  0.00000002  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0274907  normal 
 
 
-
 
NC_011831  Cagg_2270  cyclic nucleotide-binding protein  32.76 
 
 
477 aa  61.6  0.00000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.00166052 
 
 
-
 
NC_010814  Glov_3539  cyclic nucleotide-binding protein  27.91 
 
 
857 aa  61.6  0.00000002  Geobacter lovleyi SZ  Bacteria  normal  0.0290793  n/a   
 
 
-
 
NC_011729  PCC7424_3804  MscS Mechanosensitive ion channel  29.93 
 
 
495 aa  60.8  0.00000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  24.6 
 
 
263 aa  60.8  0.00000003  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_009943  Dole_1878  cyclic nucleotide-binding protein  30.7 
 
 
275 aa  61.2  0.00000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.116046  n/a   
 
 
-
 
NC_011146  Gbem_0432  cyclic nucleotide-binding protein  25.58 
 
 
860 aa  60.5  0.00000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009042  PICST_82287  cAMP-dependent protein kinase regulatory subunit (PKA regulatory subunit)  30.7 
 
 
441 aa  60.5  0.00000004  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  normal  0.770378 
 
 
-
 
NC_009720  Xaut_1892  cyclic nucleotide-binding protein  28.15 
 
 
147 aa  60.1  0.00000006  Xanthobacter autotrophicus Py2  Bacteria  normal  0.326195  normal 
 
 
-
 
NC_013440  Hoch_3831  cyclic nucleotide-binding protein  28.67 
 
 
435 aa  59.7  0.00000007  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0387698 
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  27.97 
 
 
246 aa  59.7  0.00000007  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  26.04 
 
 
225 aa  59.7  0.00000007  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013739  Cwoe_0602  transcriptional regulator, Crp/Fnr family  23.08 
 
 
225 aa  59.7  0.00000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.628877 
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  25.53 
 
 
229 aa  58.9  0.0000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  32.74 
 
 
225 aa  58.9  0.0000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_011894  Mnod_7320  cyclic nucleotide-binding protein  25.49 
 
 
169 aa  59.3  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.376819  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  27.27 
 
 
252 aa  59.3  0.0000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_002967  TDE1298  cyclic nucleotide binding domain-containing protein  25.17 
 
 
177 aa  58.2  0.0000002  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.000825589  n/a   
 
 
-
 
NC_010511  M446_0090  cyclic nucleotide-binding protein  27.64 
 
 
177 aa  58.5  0.0000002  Methylobacterium sp. 4-46  Bacteria  normal  0.247588  normal  0.0443693 
 
 
-
 
NC_002967  TDE2725  cyclic nucleotide binding/GGDEF domain-containing protein  25.87 
 
 
322 aa  58.2  0.0000003  Treponema denticola ATCC 35405  Bacteria  normal  0.792666  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  27.03 
 
 
220 aa  57.8  0.0000003  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  28.68 
 
 
222 aa  57.8  0.0000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_008346  Swol_1598  hypothetical protein  30.84 
 
 
407 aa  57.4  0.0000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.303519  n/a   
 
 
-
 
NC_008554  Sfum_3249  cyclic nucleotide-binding protein  26.57 
 
 
171 aa  57.8  0.0000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2303  MscS Mechanosensitive ion channel  32.14 
 
 
512 aa  57.4  0.0000004  Geobacter lovleyi SZ  Bacteria  normal  0.697138  n/a   
 
 
-
 
NC_007794  Saro_0301  cyclic nucleotide-binding domain-containing protein  27.97 
 
 
858 aa  57  0.0000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5447  voltage-dependent potassium channel  25.31 
 
 
409 aa  56.6  0.0000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.532768  normal  0.0697598 
 
 
-
 
NC_008148  Rxyl_1332  Crp/FNR family transcriptional regulator  30 
 
 
238 aa  56.6  0.0000006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.407818  n/a   
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  25.17 
 
 
234 aa  56.6  0.0000006  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_011989  Avi_3942  cAMP-dependent protein kinase regulatory subunit  26.35 
 
 
154 aa  56.2  0.0000008  Agrobacterium vitis S4  Bacteria  normal  0.644852  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  26.7 
 
 
225 aa  56.2  0.0000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_011831  Cagg_3713  putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase  26.43 
 
 
613 aa  56.2  0.0000009  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000235103  unclonable  0.0000000288509 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  26.98 
 
 
251 aa  55.8  0.000001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_010505  Mrad2831_5013  cyclic nucleotide-binding protein  26.52 
 
 
147 aa  55.8  0.000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.32822  normal  0.191008 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  29.25 
 
 
222 aa  55.5  0.000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_007604  Synpcc7942_0664  cyclic nucleotide-binding  26.87 
 
 
449 aa  55.5  0.000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0101822  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  26.92 
 
 
226 aa  55.8  0.000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  26.15 
 
 
226 aa  55.8  0.000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_008009  Acid345_4730  cyclic nucleotide-binding protein  27.54 
 
 
286 aa  55.8  0.000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.813554  normal  0.722063 
 
 
-
 
NC_013161  Cyan8802_3370  putative transcriptional regulator, Crp/Fnr family  28.87 
 
 
425 aa  55.5  0.000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1037  cyclic nucleotide-binding protein  24.03 
 
 
227 aa  55.8  0.000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.272663 
 
 
-
 
NC_011726  PCC8801_2732  cyclic nucleotide-binding protein  28.87 
 
 
425 aa  55.5  0.000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  29.32 
 
 
232 aa  55.8  0.000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_009523  RoseRS_2007  CBS domain-containing protein  27.46 
 
 
623 aa  55.8  0.000001  Roseiflexus sp. RS-1  Bacteria  normal  0.232416  decreased coverage  0.00139706 
 
 
-
 
NC_011891  A2cp1_3829  response regulator receiver protein  35.19 
 
 
713 aa  55.1  0.000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0106552  n/a   
 
 
-
 
NC_011366  Rleg2_5981  cyclic nucleotide-binding protein  23.57 
 
 
155 aa  54.7  0.000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_7131  putative transcriptional regulator, Crp/Fnr family  23.57 
 
 
155 aa  55.1  0.000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.331754 
 
 
-
 
NC_011145  AnaeK_3746  response regulator receiver protein  35.19 
 
 
714 aa  54.7  0.000002  Anaeromyxobacter sp. K  Bacteria  normal  0.374039  n/a   
 
 
-
 
NC_011666  Msil_0331  cyclic nucleotide-binding protein  27.12 
 
 
150 aa  54.7  0.000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0211845 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  25.3 
 
 
227 aa  54.7  0.000002  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5025  putative transcriptional regulator, Crp/Fnr family  25.17 
 
 
1056 aa  54.7  0.000002  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.00524189  normal 
 
 
-
 
NC_009955  Dshi_3674  cyclic nucleotide-binding protein  28.32 
 
 
788 aa  55.1  0.000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.301148 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  25.45 
 
 
227 aa  54.7  0.000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  27.27 
 
 
225 aa  55.1  0.000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  24.86 
 
 
233 aa  54.7  0.000002  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_011666  Msil_2455  cyclic nucleotide-binding protein  25 
 
 
594 aa  55.5  0.000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011691  PHATRDRAFT_49634  predicted protein  30.09 
 
 
621 aa  54.7  0.000003  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.387641  n/a   
 
 
-
 
NC_007760  Adeh_3688  response regulator receiver domain-containing protein  35.19 
 
 
718 aa  54.3  0.000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2719  cyclic nucleotide-binding protein  25.38 
 
 
151 aa  54.3  0.000003  Methylobacterium sp. 4-46  Bacteria  normal  0.460468  normal  0.384505 
 
 
-
 
NC_009621  Smed_5695  cyclic nucleotide-binding protein  35.96 
 
 
233 aa  54.3  0.000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.0746044  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  26.12 
 
 
227 aa  54.3  0.000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3689  cyclic nucleotide-binding protein  23.85 
 
 
454 aa  53.9  0.000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.120597  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  25.88 
 
 
225 aa  53.9  0.000004  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  20.83 
 
 
219 aa  53.9  0.000004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013889  TK90_2357  transcriptional regulator, Crp/Fnr family  25 
 
 
212 aa  53.9  0.000004  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4648  response regulator receiver protein  31.01 
 
 
253 aa  54.3  0.000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.485097  normal 
 
 
-
 
NC_011004  Rpal_4712  cyclic nucleotide-binding protein  23.19 
 
 
412 aa  53.9  0.000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.566577  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  25.88 
 
 
225 aa  53.9  0.000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  29.23 
 
 
238 aa  53.5  0.000005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0312  putative transcriptional regulator, Crp/Fnr family  29.63 
 
 
191 aa  53.9  0.000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1513  cyclic nucleotide-binding protein  26.28 
 
 
308 aa  53.9  0.000005  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.00604424  normal 
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  28.46 
 
 
238 aa  53.1  0.000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_0452  cAMP-binding protein  25.33 
 
 
160 aa  53.1  0.000006  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000000045265  n/a   
 
 
-
 
NC_007802  Jann_4171  cyclic nucleotide-binding domain-containing protein  33.33 
 
 
300 aa  53.5  0.000006  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  23.31 
 
 
230 aa  53.5  0.000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  25.56 
 
 
231 aa  53.1  0.000007  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  22.28 
 
 
257 aa  53.1  0.000007  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  26.36 
 
 
226 aa  52.8  0.000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_011830  Dhaf_3170  cyclic nucleotide-binding protein  26.17 
 
 
785 aa  52.8  0.000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0158223  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  22.86 
 
 
231 aa  52.8  0.000009  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_009675  Anae109_3814  response regulator receiver protein  31.48 
 
 
735 aa  52.4  0.00001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.706947  hitchhiker  0.0056347 
 
 
-
 
NC_010511  M446_4039  cyclic nucleotide-binding protein  27.93 
 
 
161 aa  52.4  0.00001  Methylobacterium sp. 4-46  Bacteria  normal  0.17311  normal 
 
 
-
 
NC_008048  Sala_0343  cyclic nucleotide-binding protein  28.48 
 
 
811 aa  52.8  0.00001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0783507  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.74 
 
 
228 aa  52.8  0.00001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
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