More than 300 homologs were found in PanDaTox collection
for query gene Dole_0079 on replicon NC_009943
Organism: Desulfococcus oleovorans Hxd3



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_2127  methylmalonyl-CoA mutase  64.45 
 
 
720 aa  962  Variovorax paradoxus S110  Bacteria  normal  0.063815  n/a   
 
 
-
 
NC_011353  ECH74115_4213  methylmalonyl-CoA mutase  66.57 
 
 
714 aa  962  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2510  methylmalonyl-CoA mutase  65.74 
 
 
722 aa  957  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.178476 
 
 
-
 
NC_008781  Pnap_2383  methylmalonyl-CoA mutase  64.83 
 
 
718 aa  958  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2040  methylmalonyl-CoA mutase  65.56 
 
 
720 aa  961  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3398  methylmalonyl-CoA mutase  64.55 
 
 
731 aa  943  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.526303  normal 
 
 
-
 
NC_011060  Ppha_1167  methylmalonyl-CoA mutase  62.5 
 
 
712 aa  889  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.169366  n/a   
 
 
-
 
NC_008825  Mpe_A1014  methylmalonyl-CoA mutase  63.97 
 
 
719 aa  941  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.856859 
 
 
-
 
NC_011059  Paes_0875  methylmalonyl-CoA mutase, large subunit  61.03 
 
 
1081 aa  882  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.036821 
 
 
-
 
NC_009049  Rsph17029_0867  methylmalonyl-CoA mutase  65.62 
 
 
709 aa  983  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.134958  normal 
 
 
-
 
NC_011004  Rpal_2039  methylmalonyl-CoA mutase  62.23 
 
 
719 aa  889  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3260  methylmalonyl-CoA mutase, large subunit  67.9 
 
 
713 aa  1017  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3133  methylmalonyl-CoA mutase  62.86 
 
 
760 aa  884  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0868  methylmalonyl-CoA mutase  61.29 
 
 
715 aa  884  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2763  methylmalonyl-CoA mutase  63 
 
 
751 aa  892  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0863781  normal  0.728933 
 
 
-
 
NC_011370  Rleg2_6136  methylmalonyl-CoA mutase  62.5 
 
 
717 aa  904  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0179109  normal  0.120378 
 
 
-
 
NC_011371  Rleg2_6511  methylmalonyl-CoA mutase  64.52 
 
 
712 aa  913  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1849  methylmalonyl-CoA mutase  65.7 
 
 
720 aa  963  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1284  methylmalonyl-CoA mutase  60.48 
 
 
723 aa  898  Pelobacter propionicus DSM 2379  Bacteria  normal  0.811968  n/a   
 
 
-
 
NC_011988  Avi_5687  methylmalonyl-CoA mutase  63.66 
 
 
712 aa  912  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1164  methylmalonyl-CoA mutase  60.56 
 
 
713 aa  862  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.197015  n/a   
 
 
-
 
NC_011894  Mnod_4573  methylmalonyl-CoA mutase  63.82 
 
 
720 aa  881  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3681  methylmalonyl-CoA mutase  64.4 
 
 
714 aa  953  Paracoccus denitrificans PD1222  Bacteria  normal  0.542374  normal 
 
 
-
 
NC_011831  Cagg_1349  methylmalonyl-CoA mutase  65.43 
 
 
733 aa  925  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0148615  unclonable  4.69192e-08 
 
 
-
 
NC_011757  Mchl_5261  methylmalonyl-CoA mutase  64.85 
 
 
721 aa  867  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.145645  normal 
 
 
-
 
NC_011674  PHATRDRAFT_51830  methylmalonyl-coa mutase  55.34 
 
 
719 aa  787  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_011666  Msil_3784  methylmalonyl-CoA mutase, large subunit  65.35 
 
 
736 aa  888  Methylocella silvestris BL2  Bacteria  n/a    normal  0.362344 
 
 
-
 
NC_008699  Noca_3544  methylmalonyl-CoA mutase  63.52 
 
 
720 aa  849  Nocardioides sp. JS614  Bacteria  normal  0.143219  n/a   
 
 
-
 
NC_011662  Tmz1t_3486  methylmalonyl-CoA mutase  64.4 
 
 
721 aa  944  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3183  methylmalonyl-CoA mutase  62.86 
 
 
760 aa  883  Mycobacterium sp. KMS  Bacteria  normal  normal  0.0724467 
 
 
-
 
NC_010725  Mpop_5337  methylmalonyl-CoA mutase  65 
 
 
721 aa  869  Methylobacterium populi BJ001  Bacteria  normal  0.759699  normal 
 
 
-
 
NC_010655  Amuc_1983  methylmalonyl-CoA mutase  60.88 
 
 
714 aa  883  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.774356  normal  0.0211504 
 
 
-
 
NC_009338  Mflv_3649  methylmalonyl-CoA mutase  63.15 
 
 
752 aa  883  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.808365 
 
 
-
 
NC_009523  RoseRS_0545  methylmalonyl-CoA mutase  66.15 
 
 
740 aa  962  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11523  methylmalonyl-CoA mutase  62.29 
 
 
750 aa  881  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.26728 
 
 
-
 
NC_009620  Smed_4237  methylmalonyl-CoA mutase  62 
 
 
712 aa  879  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2001  methylmalonyl-CoA mutase  61.66 
 
 
714 aa  918  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4794  methylmalonyl-CoA mutase  64.85 
 
 
721 aa  867  Methylobacterium extorquens PA1  Bacteria  normal  0.134601  normal  0.670991 
 
 
-
 
NC_010002  Daci_3753  methylmalonyl-CoA mutase  64.83 
 
 
738 aa  937  Delftia acidovorans SPH-1  Bacteria  normal  0.801598  normal  0.879758 
 
 
-
 
NC_009719  Plav_1702  methylmalonyl-CoA mutase  67.9 
 
 
718 aa  1000  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0321557 
 
 
-
 
NC_009952  Dshi_0726  methylmalonyl-CoA mutase  65.24 
 
 
712 aa  969  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.999011  normal 
 
 
-
 
NC_009720  Xaut_4731  methylmalonyl-CoA mutase  64.85 
 
 
718 aa  879  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.38651 
 
 
-
 
NC_009943  Dole_0079  methylmalonyl-CoA mutase  100 
 
 
706 aa  1456  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.373309  n/a   
 
 
-
 
NC_009767  Rcas_3872  methylmalonyl-CoA mutase  65.86 
 
 
740 aa  956  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.231489  normal  0.125312 
 
 
-
 
NC_009921  Franean1_1944  methylmalonyl-CoA mutase  61.94 
 
 
740 aa  868  Frankia sp. EAN1pec  Bacteria  normal  normal  0.132442 
 
 
-
 
NC_009800  EcHS_A3075  methylmalonyl-CoA mutase  66.85 
 
 
714 aa  964  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3630  methylmalonyl-CoA mutase  61.73 
 
 
717 aa  844  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_0793  methylmalonyl-CoA mutase  67 
 
 
714 aa  966  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2891  methylmalonyl-CoA mutase  62.61 
 
 
716 aa  909  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17991 
 
 
-
 
NC_010623  Bphy_4569  methylmalonyl-CoA mutase  49.33 
 
 
703 aa  639  Burkholderia phymatum STM815  Bacteria  normal  normal  0.365134 
 
 
-
 
NC_009379  Pnuc_0910  methylmalonyl-CoA mutase  63.86 
 
 
739 aa  934  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.736612  n/a   
 
 
-
 
NC_010581  Bind_2199  methylmalonyl-CoA mutase, large subunit  60.64 
 
 
727 aa  822  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3304  methylmalonyl-CoA mutase, large subunit  64.95 
 
 
719 aa  932  Opitutus terrae PB90-1  Bacteria  decreased coverage  0.00679496  normal  0.683271 
 
 
-
 
NC_009428  Rsph17025_2300  methylmalonyl-CoA mutase  65.62 
 
 
709 aa  960  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_0932  methylmalonyl-CoA mutase  64.05 
 
 
724 aa  936  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2697  methylmalonyl-CoA mutase  63.91 
 
 
720 aa  941  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20812 
 
 
-
 
NC_010511  M446_3042  methylmalonyl-CoA mutase  63.82 
 
 
720 aa  868  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.057217 
 
 
-
 
NC_009441  Fjoh_0014  methylmalonyl-CoA mutase  63.09 
 
 
711 aa  924  Flavobacterium johnsoniae UW101  Bacteria  normal  0.185174  n/a   
 
 
-
 
NC_010505  Mrad2831_1736  methylmalonyl-CoA mutase  63.82 
 
 
721 aa  864  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_3053  methylmalonyl-CoA mutase  66.85 
 
 
714 aa  965  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_1173  methylmalonyl-CoA mutase, large subunit  60.62 
 
 
1106 aa  870  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.00593374 
 
 
-
 
NC_009485  BBta_3021  methylmalonyl-CoA mutase  62.68 
 
 
718 aa  894  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.954275 
 
 
-
 
NC_009801  EcE24377A_3244  methylmalonyl-CoA mutase  67 
 
 
714 aa  967  Escherichia coli E24377A  Bacteria  normal  0.98625  n/a   
 
 
-
 
NC_008576  Mmc1_0388  methylmalonyl-CoA mutase  63.34 
 
 
714 aa  934  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_0776  methylmalonyl-CoA mutase, large subunit  66.85 
 
 
714 aa  964  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3188  Methylmalonyl-CoA mutase  63.13 
 
 
725 aa  898  Streptosporangium roseum DSM 43021  Bacteria  normal  0.36577  normal  0.670701 
 
 
-
 
NC_007643  Rru_A2479  methylmalonyl-CoA mutase  63.82 
 
 
732 aa  909  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2505  methylmalonyl-CoA mutase, large subunit  61.97 
 
 
736 aa  889  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000422516  n/a   
 
 
-
 
NC_013441  Gbro_2420  methylmalonyl-CoA mutase, large subunit  63.25 
 
 
763 aa  899  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3005  methylmalonyl-CoA mutase  62.68 
 
 
754 aa  881  Frankia sp. CcI3  Bacteria  normal  0.598546  normal  0.356991 
 
 
-
 
NC_013411  GYMC61_0279  methylmalonyl-CoA mutase  64.09 
 
 
731 aa  950  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_5166  methylmalonyl-CoA mutase  62.99 
 
 
724 aa  865  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3538  methylmalonyl-CoA mutase  62.52 
 
 
736 aa  889  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.162308  normal  0.256268 
 
 
-
 
NC_007794  Saro_0811  methylmalonyl-CoA mutase  64.13 
 
 
714 aa  934  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.251875  n/a   
 
 
-
 
NC_013169  Ksed_22170  methylmalonyl-CoA mutase  64.06 
 
 
754 aa  914  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.366718  normal  0.398515 
 
 
-
 
NC_007802  Jann_3367  methylmalonyl-CoA mutase  64.31 
 
 
709 aa  964  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_1223  methylmalonyl-CoA mutase  61.65 
 
 
712 aa  879  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1292  methylmalonyl-CoA mutase  61.47 
 
 
714 aa  877  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.816153 
 
 
-
 
NC_007493  RSP_2192  methylmalonyl-CoA mutase  65.34 
 
 
709 aa  979  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.172259  n/a   
 
 
-
 
NC_014211  Ndas_5545  methylmalonyl-CoA mutase, large subunit  62.82 
 
 
738 aa  859  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1920  methylmalonyl-CoA mutase large subunit  64.38 
 
 
720 aa  905  Thermobispora bispora DSM 43833  Bacteria  normal  0.0552222  normal  0.617547 
 
 
-
 
NC_002950  PG1657  methylmalonyl-CoA mutase  63.97 
 
 
715 aa  923  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.387473 
 
 
-
 
NC_014158  Tpau_2105  methylmalonyl-CoA mutase, large subunit  63.44 
 
 
745 aa  899  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR1190  methylmalonyl-CoA mutase  62.8 
 
 
712 aa  930  Brucella suis 1330  Bacteria  normal  0.942727  n/a   
 
 
-
 
NC_007298  Daro_4006  methylmalonyl-CoA mutase  62.98 
 
 
716 aa  959  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2762  methylmalonyl-CoA mutase  62.82 
 
 
740 aa  883  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02748  methylmalonyl-CoA mutase  67 
 
 
714 aa  966  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4373  methylmalonyl-CoA mutase, large subunit  60.77 
 
 
735 aa  867  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2238  methylmalonyl-CoA mutase  62.57 
 
 
722 aa  892  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6640  methylmalonyl-CoA mutase, large subunit  64.02 
 
 
724 aa  932  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.70273 
 
 
-
 
NC_007908  Rfer_2805  methylmalonyl-CoA mutase  63.68 
 
 
719 aa  938  Rhodoferax ferrireducens T118  Bacteria  normal  0.147831  n/a   
 
 
-
 
NC_013159  Svir_05680  methylmalonyl-CoA mutase  64.68 
 
 
726 aa  939  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02711  hypothetical protein  67 
 
 
714 aa  966  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_07125  methylmalonyl-CoA mutase  63.86 
 
 
707 aa  923  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1865  methylmalonyl-CoA mutase  67.58 
 
 
661 aa  912  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1221  methylmalonyl-CoA mutase  63.34 
 
 
715 aa  884  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.584735  normal 
 
 
-
 
NC_013037  Dfer_5804  methylmalonyl-CoA mutase  63.21 
 
 
972 aa  908  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.256305  normal  0.17905 
 
 
-
 
NC_008146  Mmcs_3122  methylmalonyl-CoA mutase  62.86 
 
 
760 aa  883  Mycobacterium sp. MCS  Bacteria  normal  0.203405  n/a   
 
 
-
 
NC_007964  Nham_2638  methylmalonyl-CoA mutase  63.25 
 
 
720 aa  897  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_6098  methylmalonyl-CoA mutase  64.23 
 
 
712 aa  890  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.23929  normal  0.554736 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>