More than 300 homologs were found in PanDaTox collection
for query gene Dhaf_3270 on replicon NC_011830
Organism: Desulfitobacterium hafniense DCB-2



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  100 
 
 
517 aa  1064    Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  59.5 
 
 
518 aa  645    Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_002936  DET0110  [Ni/Fe] hydrogenase, group 1, large subunit, putative  42.57 
 
 
526 aa  416  9.999999999999999e-116  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  40.87 
 
 
546 aa  406  1.0000000000000001e-112  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_009455  DehaBAV1_0258  nickel-dependent hydrogenase, large subunit  41.37 
 
 
526 aa  403  1e-111  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_120  Ni/Fe hydrogenase, large subunit  40.82 
 
 
526 aa  400  9.999999999999999e-111  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  40.85 
 
 
566 aa  399  9.999999999999999e-111  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  43.5 
 
 
481 aa  393  1e-108  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_010424  Daud_1042  nickel-dependent hydrogenase, large subunit  42.17 
 
 
485 aa  395  1e-108  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.90765  n/a   
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  38.98 
 
 
566 aa  393  1e-108  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  39.86 
 
 
569 aa  392  1e-108  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  40.42 
 
 
566 aa  395  1e-108  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  40.46 
 
 
564 aa  388  1e-106  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  38.34 
 
 
566 aa  382  1e-105  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  39.23 
 
 
566 aa  383  1e-105  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  37.19 
 
 
570 aa  379  1e-104  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  37.7 
 
 
570 aa  379  1e-104  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  37.96 
 
 
567 aa  376  1e-103  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_011883  Ddes_1038  nickel-dependent hydrogenase large subunit  38.32 
 
 
558 aa  365  1e-100  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.368471  n/a   
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  37.02 
 
 
568 aa  365  1e-99  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  37.77 
 
 
560 aa  360  3e-98  Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  36.73 
 
 
568 aa  360  4e-98  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  41.87 
 
 
458 aa  358  9e-98  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  38.3 
 
 
567 aa  356  5e-97  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1733  nickel-dependent hydrogenase large subunit  37.41 
 
 
549 aa  356  5.999999999999999e-97  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_011083  SeHA_C3394  hydrogenase 2 large subunit  38.25 
 
 
567 aa  354  2e-96  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.571998 
 
 
-
 
NC_011094  SeSA_A3329  hydrogenase 2 large subunit  37.61 
 
 
567 aa  354  2e-96  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B3320  hydrogenase 2 large subunit  38.25 
 
 
567 aa  354  2e-96  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.118706  n/a   
 
 
-
 
NC_011080  SNSL254_A3400  hydrogenase 2 large subunit  38.25 
 
 
567 aa  354  2e-96  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A3495  hydrogenase 2 large subunit  38.25 
 
 
567 aa  354  2e-96  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.233634  normal 
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  38.13 
 
 
567 aa  353  2.9999999999999997e-96  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
CP001509  ECD_02870  hydrogenase 2, large subunit  38.13 
 
 
567 aa  353  2.9999999999999997e-96  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  38.13 
 
 
567 aa  353  2.9999999999999997e-96  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3463  hydrogenase 2 large subunit  38.13 
 
 
567 aa  353  2.9999999999999997e-96  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  38.13 
 
 
567 aa  353  2.9999999999999997e-96  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02819  hypothetical protein  38.13 
 
 
567 aa  353  2.9999999999999997e-96  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3280  hydrogenase 2 large subunit  38.13 
 
 
567 aa  353  2.9999999999999997e-96  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  38.13 
 
 
567 aa  353  2.9999999999999997e-96  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  38.19 
 
 
567 aa  352  8.999999999999999e-96  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  36.91 
 
 
569 aa  352  1e-95  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  37.78 
 
 
573 aa  351  1e-95  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  36.41 
 
 
567 aa  350  5e-95  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  37.46 
 
 
585 aa  349  6e-95  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  37.46 
 
 
585 aa  349  6e-95  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  37.59 
 
 
567 aa  347  4e-94  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  36.77 
 
 
560 aa  346  6e-94  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  37.76 
 
 
567 aa  345  8e-94  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  37 
 
 
584 aa  345  1e-93  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  37.02 
 
 
563 aa  345  1e-93  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  37.68 
 
 
567 aa  344  2e-93  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  37.68 
 
 
567 aa  344  2e-93  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  37.68 
 
 
567 aa  344  2e-93  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3756  periplasmic (NiFe) hydrogenase, large subunit, isozyme 2  37.13 
 
 
554 aa  343  4e-93  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  36.03 
 
 
572 aa  343  5.999999999999999e-93  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  35.89 
 
 
573 aa  342  1e-92  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  37.9 
 
 
567 aa  342  1e-92  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  36.8 
 
 
568 aa  340  2.9999999999999998e-92  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  35.36 
 
 
572 aa  339  5.9999999999999996e-92  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  36.54 
 
 
567 aa  338  9.999999999999999e-92  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  36.35 
 
 
572 aa  336  5e-91  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  34.78 
 
 
572 aa  336  5.999999999999999e-91  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  36.07 
 
 
600 aa  335  1e-90  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  36.01 
 
 
600 aa  335  1e-90  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  36.07 
 
 
600 aa  335  1e-90  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  36.07 
 
 
600 aa  335  1e-90  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  36.07 
 
 
600 aa  335  1e-90  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0718  nickel-dependent hydrogenase, large subunit  35.57 
 
 
549 aa  335  1e-90  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.338951 
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  36.28 
 
 
570 aa  334  2e-90  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3971  nickel-dependent hydrogenase, large subunit  36.93 
 
 
570 aa  334  2e-90  Dechloromonas aromatica RCB  Bacteria  normal  0.533836  normal 
 
 
-
 
NC_012880  Dd703_2531  hydrogenase 2 large subunit  35.42 
 
 
568 aa  335  2e-90  Dickeya dadantii Ech703  Bacteria  normal  0.597514  n/a   
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  35.01 
 
 
572 aa  334  3e-90  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  35.01 
 
 
572 aa  333  6e-90  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  37.65 
 
 
567 aa  332  8e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_0523  nickel-dependent hydrogenase large subunit  38.06 
 
 
578 aa  331  1e-89  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1375  Ni-Fe hydrogenase large chain  35.63 
 
 
596 aa  331  2e-89  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0200361  normal 
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  36.59 
 
 
568 aa  330  3e-89  Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  37.54 
 
 
567 aa  329  8e-89  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  37.54 
 
 
567 aa  329  8e-89  Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  37.54 
 
 
567 aa  329  8e-89  Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  38.82 
 
 
514 aa  328  1.0000000000000001e-88  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  35.75 
 
 
578 aa  328  1.0000000000000001e-88  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  35.2 
 
 
598 aa  327  2.0000000000000001e-88  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00347  Ni-Fe hydrogenase large chain  34.94 
 
 
625 aa  328  2.0000000000000001e-88  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  35.57 
 
 
597 aa  328  2.0000000000000001e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_012912  Dd1591_1413  hydrogenase 2 large subunit  34.59 
 
 
568 aa  328  2.0000000000000001e-88  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  35.92 
 
 
567 aa  328  2.0000000000000001e-88  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_008781  Pnap_1974  nickel-dependent hydrogenase, large subunit  33.39 
 
 
618 aa  327  2.0000000000000001e-88  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.688051  normal 
 
 
-
 
NC_013165  Shel_12910  Ni,Fe-hydrogenase I large subunit  35.94 
 
 
545 aa  327  3e-88  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.343906  normal  0.388227 
 
 
-
 
NC_009665  Shew185_1914  nickel-dependent hydrogenase large subunit  37.37 
 
 
567 aa  327  4.0000000000000003e-88  Shewanella baltica OS185  Bacteria  normal  0.392356  n/a   
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  35.54 
 
 
559 aa  326  5e-88  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  35.06 
 
 
597 aa  326  6e-88  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  35.49 
 
 
583 aa  325  9e-88  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  35.15 
 
 
596 aa  325  9e-88  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  34.76 
 
 
598 aa  325  1e-87  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  35.46 
 
 
596 aa  325  1e-87  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_007519  Dde_2135  periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing  40.58 
 
 
488 aa  325  1e-87  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  35.04 
 
 
595 aa  325  1e-87  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  35.18 
 
 
559 aa  325  1e-87  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0506  nickel-dependent hydrogenase large subunit  36.72 
 
 
577 aa  324  2e-87  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0511  nickel-dependent hydrogenase large subunit  36.72 
 
 
577 aa  325  2e-87  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>