More than 300 homologs were found in PanDaTox collection
for query gene Dfer_1108 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_5025  putative transcriptional regulator, Crp/Fnr family  39.32 
 
 
1056 aa  671    Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.00524189  normal 
 
 
-
 
NC_013037  Dfer_1108  putative transcriptional regulator, Crp/Fnr family  100 
 
 
1075 aa  2208    Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.000733786  normal  0.267995 
 
 
-
 
NC_007413  Ava_3692  cyclic nucleotide-binding domain-containing protein  31.88 
 
 
146 aa  89.4  4e-16  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_1954  putative Crp/Fnr family transcriptional regulator  33.57 
 
 
141 aa  89  5e-16  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_2905  cyclic nucleotide-binding protein  32.14 
 
 
157 aa  88.2  8e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0600936 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  36.5 
 
 
225 aa  86.3  0.000000000000003  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_008312  Tery_0929  HEAT repeat-containing PBS lyase  21.68 
 
 
1010 aa  85.5  0.000000000000006  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  33.33 
 
 
225 aa  82.8  0.00000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013440  Hoch_4460  putative transcriptional regulator, Crp/Fnr family  35.97 
 
 
171 aa  81.3  0.00000000000009  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.71 
 
 
242 aa  79  0.0000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  32.61 
 
 
228 aa  78.6  0.0000000000005  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  31.72 
 
 
563 aa  79  0.0000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  34.06 
 
 
225 aa  78.2  0.0000000000007  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  37.06 
 
 
225 aa  77.4  0.000000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  28.47 
 
 
225 aa  77.4  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  25.19 
 
 
236 aa  76.6  0.000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  32.85 
 
 
225 aa  76.6  0.000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  34.06 
 
 
224 aa  76.3  0.000000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  31.88 
 
 
224 aa  75.9  0.000000000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  29.71 
 
 
224 aa  75.5  0.000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  30.07 
 
 
224 aa  75.5  0.000000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_013161  Cyan8802_3370  putative transcriptional regulator, Crp/Fnr family  29.63 
 
 
425 aa  75.1  0.000000000006  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2732  cyclic nucleotide-binding protein  29.63 
 
 
425 aa  75.1  0.000000000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  30.43 
 
 
225 aa  74.7  0.000000000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_010725  Mpop_3019  cyclic nucleotide-binding protein  30.88 
 
 
149 aa  74.7  0.000000000009  Methylobacterium populi BJ001  Bacteria  normal  0.852704  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  29.86 
 
 
226 aa  74.7  0.000000000009  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  29.86 
 
 
226 aa  73.9  0.00000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  31.43 
 
 
228 aa  73.2  0.00000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  30.77 
 
 
226 aa  73.6  0.00000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  28.47 
 
 
228 aa  73.2  0.00000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  30.43 
 
 
225 aa  73.6  0.00000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5013  cyclic nucleotide-binding protein  30.83 
 
 
147 aa  73.6  0.00000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.32822  normal  0.191008 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  31.16 
 
 
228 aa  73.2  0.00000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  32.84 
 
 
226 aa  73.2  0.00000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  31.97 
 
 
233 aa  72.4  0.00000000004  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  27.92 
 
 
230 aa  72.8  0.00000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  29.71 
 
 
226 aa  72  0.00000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  28.68 
 
 
226 aa  71.2  0.00000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  30.07 
 
 
226 aa  70.9  0.0000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_011757  Mchl_3122  cyclic nucleotide-binding protein  30.15 
 
 
149 aa  71.2  0.0000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.196103 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  32.61 
 
 
225 aa  70.9  0.0000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_011894  Mnod_4405  cyclic nucleotide-binding protein  29.63 
 
 
148 aa  71.2  0.0000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  30.77 
 
 
230 aa  71.2  0.0000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2896  cyclic nucleotide-binding  30.15 
 
 
194 aa  70.5  0.0000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.633977  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  29.08 
 
 
243 aa  69.7  0.0000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_009620  Smed_4601  cyclic nucleotide-binding protein  29.01 
 
 
154 aa  69.7  0.0000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.930738 
 
 
-
 
NC_008346  Swol_1598  hypothetical protein  35.14 
 
 
407 aa  69.7  0.0000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.303519  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.55 
 
 
220 aa  68.9  0.0000000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  28.57 
 
 
223 aa  68.9  0.0000000004  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  28.77 
 
 
224 aa  68.6  0.0000000006  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  34.48 
 
 
224 aa  68.2  0.0000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2719  cyclic nucleotide-binding protein  28.15 
 
 
151 aa  67.8  0.000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.460468  normal  0.384505 
 
 
-
 
NC_007517  Gmet_0750  Crp/FNR family transcriptional regulator  29.46 
 
 
238 aa  67  0.000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  28.47 
 
 
225 aa  66.6  0.000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1111  cyclic nucleotide-binding  26.8 
 
 
729 aa  66.6  0.000000003  Magnetococcus sp. MC-1  Bacteria  normal  0.804267  normal 
 
 
-
 
NC_012858  Rleg_7131  putative transcriptional regulator, Crp/Fnr family  29.77 
 
 
155 aa  65.5  0.000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.331754 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  28.26 
 
 
225 aa  65.1  0.000000007  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_013440  Hoch_3831  cyclic nucleotide-binding protein  29.69 
 
 
435 aa  65.1  0.000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0387698 
 
 
-
 
NC_011884  Cyan7425_0841  cyclic nucleotide-binding protein  28.79 
 
 
160 aa  64.7  0.000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.108052 
 
 
-
 
NC_009485  BBta_0079  hypothetical protein  24.64 
 
 
169 aa  64.7  0.000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.26747 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  30.89 
 
 
227 aa  64.3  0.00000001  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  28.67 
 
 
225 aa  64.7  0.00000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13268  transmembrane transport protein  31.71 
 
 
1048 aa  64.3  0.00000001  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.321047 
 
 
-
 
NC_011729  PCC7424_3804  MscS Mechanosensitive ion channel  32.46 
 
 
495 aa  64.3  0.00000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  28.68 
 
 
238 aa  64.3  0.00000001  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  27.86 
 
 
236 aa  63.9  0.00000002  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_007298  Daro_3904  cyclic nucleotide-binding:Sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulphate transporter  30.33 
 
 
736 aa  63.9  0.00000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  28.06 
 
 
219 aa  63.5  0.00000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_002967  TDE2616  cyclic nucleotide-binding protein  33.33 
 
 
219 aa  63.2  0.00000003  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  30.43 
 
 
224 aa  62.8  0.00000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5607  cAMP-dependent protein kinase regulatory subunit  29.01 
 
 
154 aa  63.2  0.00000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4020  cyclic nucleotide-binding  31.45 
 
 
367 aa  62.8  0.00000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.109231  normal  0.727114 
 
 
-
 
NC_013440  Hoch_5417  cyclic nucleotide-binding protein  34.62 
 
 
419 aa  63.2  0.00000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0881735  normal  0.0681678 
 
 
-
 
NC_011366  Rleg2_5981  cyclic nucleotide-binding protein  29.01 
 
 
155 aa  62.8  0.00000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  28.26 
 
 
252 aa  62.4  0.00000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_007948  Bpro_0718  cyclic nucleotide-binding  30.14 
 
 
747 aa  62.4  0.00000004  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00567448  normal 
 
 
-
 
NC_010505  Mrad2831_0617  cyclic nucleotide-binding protein  31.48 
 
 
577 aa  62.8  0.00000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.340501  normal 
 
 
-
 
NC_013440  Hoch_3345  cyclic nucleotide-binding protein  28.15 
 
 
417 aa  62.4  0.00000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.254717  normal 
 
 
-
 
NC_014230  CA2559_09318  hypothetical protein  24.64 
 
 
939 aa  62.4  0.00000004  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  29.69 
 
 
233 aa  62.4  0.00000004  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_009523  RoseRS_3166  cyclic nucleotide-binding protein  27.17 
 
 
482 aa  62  0.00000005  Roseiflexus sp. RS-1  Bacteria  decreased coverage  0.00363184  normal 
 
 
-
 
NC_011989  Avi_3942  cAMP-dependent protein kinase regulatory subunit  28.99 
 
 
154 aa  61.6  0.00000007  Agrobacterium vitis S4  Bacteria  normal  0.644852  n/a   
 
 
-
 
NC_011729  PCC7424_0056  cyclic nucleotide-binding  32.84 
 
 
739 aa  61.6  0.00000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  32.85 
 
 
214 aa  61.6  0.00000008  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  26.81 
 
 
225 aa  61.2  0.00000009  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4730  cyclic nucleotide-binding protein  25.36 
 
 
286 aa  61.2  0.00000009  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.813554  normal  0.722063 
 
 
-
 
NC_011894  Mnod_3195  cyclic nucleotide-binding protein  29.63 
 
 
598 aa  60.8  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2894  cyclic nucleotide-binding protein  27.88 
 
 
482 aa  61.2  0.0000001  Roseiflexus castenholzii DSM 13941  Bacteria  decreased coverage  0.00660929  normal 
 
 
-
 
NC_007604  Synpcc7942_1814  cyclic nucleotide-binding domain-containing protein  28.33 
 
 
242 aa  60.8  0.0000001  Synechococcus elongatus PCC 7942  Bacteria  normal  0.38579  normal  0.245711 
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  31.54 
 
 
229 aa  61.2  0.0000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  28.36 
 
 
226 aa  61.2  0.0000001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  31.69 
 
 
231 aa  61.2  0.0000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  30.6 
 
 
228 aa  60.8  0.0000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_009972  Haur_4167  cyclic nucleotide-binding protein  28.68 
 
 
570 aa  61.2  0.0000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  28.81 
 
 
238 aa  60.5  0.0000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009356  OSTLU_12211  predicted protein  33.33 
 
 
528 aa  60.5  0.0000002  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  n/a   
 
 
-
 
NC_013440  Hoch_6450  putative transcriptional regulator, Crp/Fnr family  29.91 
 
 
253 aa  60.1  0.0000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3563  cyclic nucleotide-binding protein  25.58 
 
 
312 aa  60.5  0.0000002  Pseudomonas mendocina ymp  Bacteria  normal  0.187188  normal 
 
 
-
 
NC_009675  Anae109_3203  cyclic nucleotide-binding protein  24.82 
 
 
165 aa  60.1  0.0000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1063  transcriptional regulator, Crp/Fnr family  27.78 
 
 
238 aa  60.5  0.0000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
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