More than 300 homologs were found in PanDaTox collection
for query gene Ddes_0018 on replicon NC_011883
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011883  Ddes_0018  response regulator receiver protein  100 
 
 
135 aa  280  4e-75  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  decreased coverage  2.18096e-06  n/a   
 
 
-
 
NC_011769  DvMF_1991  response regulator receiver protein  59.35 
 
 
153 aa  150  5e-36  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_0150  response regulator receiver protein  58.68 
 
 
134 aa  122  1e-27  Desulfovibrio vulgaris DP4  Bacteria  normal  0.89872  normal  0.680282 
 
 
-
 
NC_013173  Dbac_1807  response regulator receiver protein  46.77 
 
 
139 aa  120  5e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1988  response regulator receiver protein  47.46 
 
 
119 aa  112  2e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  40.83 
 
 
151 aa  112  2e-24  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0314  response regulator receiver protein  44.8 
 
 
131 aa  110  5e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0234873  n/a   
 
 
-
 
NC_009943  Dole_1357  response regulator receiver protein  44.35 
 
 
144 aa  110  5e-24  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.48275  n/a   
 
 
-
 
NC_008751  Dvul_0173  response regulator receiver protein  44.35 
 
 
121 aa  109  1e-23  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4779  two component, sigma54 specific, transcriptional regulator, Fis family  40.16 
 
 
494 aa  109  1e-23  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1566  response regulator receiver protein  44.17 
 
 
126 aa  105  2e-22  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1352  response regulator receiver protein  41.32 
 
 
139 aa  104  5e-22  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  1.959e-05  n/a   
 
 
-
 
NC_011769  DvMF_1769  response regulator receiver protein  46.09 
 
 
129 aa  102  2e-21  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009943  Dole_1351  response regulator receiver protein  40.62 
 
 
141 aa  101  3e-21  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000171187  n/a   
 
 
-
 
NC_008554  Sfum_0632  response regulator receiver protein  44.14 
 
 
135 aa  101  4e-21  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  37.19 
 
 
448 aa  101  4e-21  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3717  response regulator receiver sensor signal transduction histidine kinase  40.32 
 
 
401 aa  100  8e-21  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0435  response regulator receiver protein  42.59 
 
 
124 aa  100  9e-21  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00876892  n/a   
 
 
-
 
NC_009943  Dole_1350  response regulator receiver protein  39.2 
 
 
147 aa  99.8  1e-20  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00189482  n/a   
 
 
-
 
NC_007760  Adeh_1908  two component, sigma54 specific, Fis family transcriptional regulator  42.5 
 
 
473 aa  98.2  3e-20  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0407  response regulator receiver protein  41.18 
 
 
128 aa  98.6  3e-20  Desulfovibrio vulgaris DP4  Bacteria  normal  0.627834  normal  0.12665 
 
 
-
 
NC_011662  Tmz1t_1843  two component, sigma54 specific, transcriptional regulator, Fis family  43.52 
 
 
465 aa  98.2  3e-20  Thauera sp. MZ1T  Bacteria  normal  0.798265  n/a   
 
 
-
 
NC_010814  Glov_3603  response regulator receiver protein  40.37 
 
 
131 aa  97.8  4e-20  Geobacter lovleyi SZ  Bacteria  normal  0.656399  n/a   
 
 
-
 
NC_013173  Dbac_2037  response regulator receiver protein  42.06 
 
 
120 aa  97.8  5e-20  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0620  response regulator receiver protein  39.71 
 
 
142 aa  97.1  7e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0618  response regulator receiver protein  37.8 
 
 
157 aa  97.1  8e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0532  two component, sigma54 specific, transcriptional regulator, Fis family  41.03 
 
 
470 aa  96.7  9e-20  Ammonifex degensii KC4  Bacteria  hitchhiker  0.00706375  n/a   
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  41.03 
 
 
461 aa  96.3  1e-19  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  41.03 
 
 
461 aa  96.3  1e-19  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_011145  AnaeK_1971  two component, sigma54 specific, transcriptional regulator, Fis family  41.67 
 
 
473 aa  96.7  1e-19  Anaeromyxobacter sp. K  Bacteria  normal  0.0887215  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  41.03 
 
 
461 aa  96.3  1e-19  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2334  response regulator receiver protein  42.98 
 
 
151 aa  96.7  1e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_2709  response regulator receiver sensor signal transduction histidine kinase  42.37 
 
 
501 aa  96.3  1e-19  Desulfovibrio vulgaris DP4  Bacteria  normal  0.710197  normal  0.745824 
 
 
-
 
NC_002939  GSU1117  response regulator  40.74 
 
 
127 aa  96.3  1e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  41.03 
 
 
461 aa  96.3  1e-19  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  41.03 
 
 
461 aa  96.3  1e-19  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_011891  A2cp1_2056  two component, sigma54 specific, transcriptional regulator, Fis family  41.67 
 
 
473 aa  96.7  1e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.732718  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  42.73 
 
 
461 aa  95.9  2e-19  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_009675  Anae109_1951  two component, sigma54 specific, Fis family transcriptional regulator  41.67 
 
 
470 aa  95.9  2e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.516267  normal 
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  48.51 
 
 
444 aa  95.9  2e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_008554  Sfum_0636  response regulator receiver protein  43.48 
 
 
124 aa  94.7  4e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.621219  normal 
 
 
-
 
NC_010814  Glov_2786  two component, sigma54 specific, transcriptional regulator, Fis family  37.69 
 
 
480 aa  94.7  4e-19  Geobacter lovleyi SZ  Bacteria  normal  0.543097  n/a   
 
 
-
 
NC_012850  Rleg_3460  two component, sigma54 specific, transcriptional regulator, Fis family  47.52 
 
 
444 aa  94.4  5e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0376131  normal 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  37.6 
 
 
465 aa  94  6e-19  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2269  response regulator receiver protein  40.5 
 
 
130 aa  94  6e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.740525  n/a   
 
 
-
 
NC_007517  Gmet_2679  response regulator receiver domain-containing protein  37.04 
 
 
129 aa  93.6  8e-19  Geobacter metallireducens GS-15  Bacteria  normal  0.380915  normal  0.27601 
 
 
-
 
NC_002939  GSU0008  sensory box histidine kinase/response regulator  36.15 
 
 
516 aa  92.8  1e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0717  two component, sigma54 specific, Fis family transcriptional regulator  40.17 
 
 
466 aa  92.4  2e-18  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4505  nitrogen regulation protein NR(I)  37.21 
 
 
470 aa  92.8  2e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  0.565329  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.71 
 
 
454 aa  92.4  2e-18  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4159  nitrogen regulation protein NR(I)  37.21 
 
 
470 aa  92.4  2e-18  Dickeya zeae Ech1591  Bacteria  normal  0.086406  n/a   
 
 
-
 
NC_012880  Dd703_3962  nitrogen regulation protein NR(I)  37.21 
 
 
470 aa  92  2e-18  Dickeya dadantii Ech703  Bacteria  normal  0.389706  n/a   
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  35.71 
 
 
471 aa  92.4  2e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  37.4 
 
 
458 aa  91.7  3e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6438  putative two component, sigma54 specific, transcriptional regulator, Fis family  35.25 
 
 
394 aa  92  3e-18  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.00615091  normal  0.383003 
 
 
-
 
NC_009943  Dole_2331  response regulator receiver protein  37.61 
 
 
142 aa  91.7  3e-18  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  4.25244e-09  n/a   
 
 
-
 
NC_009441  Fjoh_5047  two component, sigma54 specific, Fis family transcriptional regulator  35.71 
 
 
387 aa  92  3e-18  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0897789  n/a   
 
 
-
 
NC_007908  Rfer_2741  two component, sigma54 specific, Fis family transcriptional regulator  41.13 
 
 
474 aa  92  3e-18  Rhodoferax ferrireducens T118  Bacteria  normal  0.0363909  n/a   
 
 
-
 
NC_008554  Sfum_0656  response regulator receiver protein  40.16 
 
 
129 aa  91.3  4e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.663964  normal 
 
 
-
 
NC_009943  Dole_1361  response regulator receiver protein  40.87 
 
 
147 aa  91.3  5e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0751  two component, sigma54 specific, transcriptional regulator, Fis family  34.78 
 
 
490 aa  90.9  5e-18  Spirosoma linguale DSM 74  Bacteria  normal  0.664159  normal 
 
 
-
 
NC_009943  Dole_1341  response regulator receiver protein  42.11 
 
 
301 aa  90.9  5e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0657  response regulator receiver protein  42.98 
 
 
143 aa  90.9  5e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.771795  normal 
 
 
-
 
NC_012917  PC1_4222  nitrogen regulation protein NR(I)  36.43 
 
 
470 aa  90.5  7e-18  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.327829  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  40.52 
 
 
470 aa  90.5  7e-18  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_008609  Ppro_1179  two component, sigma54 specific, Fis family transcriptional regulator  37.4 
 
 
457 aa  90.5  7e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  0.655382  n/a   
 
 
-
 
NC_011146  Gbem_1660  response regulator receiver protein  36.11 
 
 
126 aa  90.5  8e-18  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2553  response regulator receiver protein  36.11 
 
 
126 aa  90.5  8e-18  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.11945e-20 
 
 
-
 
NC_009483  Gura_0009  multi-sensor signal transduction histidine kinase  38.6 
 
 
508 aa  90.5  8e-18  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1394  two component, sigma54 specific, Fis family transcriptional regulator  37.4 
 
 
450 aa  90.5  8e-18  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.205793  normal  0.0550645 
 
 
-
 
NC_009675  Anae109_2205  two component Fis family transcriptional regulator  36.84 
 
 
182 aa  90.1  9e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.143694 
 
 
-
 
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  39.82 
 
 
469 aa  90.1  9e-18  Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
NC_009483  Gura_3572  two component, sigma-54 specific, Fis family transcriptional regulator  34.68 
 
 
457 aa  89.7  1e-17  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1829  response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase  38.4 
 
 
357 aa  89.4  1e-17  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2031  response regulator receiver modulated metal dependent phosphohydrolase  38.4 
 
 
357 aa  89.4  1e-17  Anaeromyxobacter sp. K  Bacteria  normal  0.306573  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  37.7 
 
 
461 aa  89.7  1e-17  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_007498  Pcar_2017  response regulator CheY  39.17 
 
 
129 aa  89.7  1e-17  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2101  response regulator receiver modulated metal dependent phosphohydrolase  38.4 
 
 
357 aa  89.4  1e-17  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00584  response regulator  35.59 
 
 
467 aa  90.1  1e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013173  Dbac_2042  response regulator receiver protein  39.47 
 
 
147 aa  90.1  1e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  36.29 
 
 
457 aa  89.7  1e-17  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1055  two component, sigma54 specific, Fis family transcriptional regulator  38.14 
 
 
508 aa  88.6  2e-17  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00334907 
 
 
-
 
NC_009943  Dole_1360  response regulator receiver sensor signal transduction histidine kinase  38.74 
 
 
403 aa  89  2e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3770  response regulator receiver protein  35.48 
 
 
391 aa  89.4  2e-17  Roseiflexus sp. RS-1  Bacteria  normal  unclonable  1.12062e-05 
 
 
-
 
NC_008751  Dvul_2827  response regulator receiver protein  34.62 
 
 
137 aa  88.2  3e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_08281  two component, sigma54 specific, transcriptional regulator, Fis family protein  35.71 
 
 
388 aa  88.2  3e-17  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4689  two component, sigma54 specific, Fis family transcriptional regulator  45.71 
 
 
447 aa  88.6  3e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.338732 
 
 
-
 
NC_009483  Gura_2387  two component, sigma-54 specific, Fis family transcriptional regulator  38.14 
 
 
510 aa  88.6  3e-17  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  38.26 
 
 
456 aa  88.2  3e-17  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  38.26 
 
 
456 aa  88.2  3e-17  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  35.2 
 
 
451 aa  88.2  4e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_009972  Haur_2366  two component, sigma54 specific, Fis family transcriptional regulator  38.26 
 
 
385 aa  88.2  4e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  3.42445e-05  n/a   
 
 
-
 
NC_008228  Patl_1028  nitrogen metabolism transcriptional regulator, NtrC, Fis family  34.59 
 
 
468 aa  87.8  4e-17  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.070914  n/a   
 
 
-
 
NC_011769  DvMF_0700  two component, sigma54 specific, transcriptional regulator, Fis family  39.25 
 
 
448 aa  87.8  4e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.219431 
 
 
-
 
NC_007517  Gmet_0010  PAS/PAC sensor hybrid histidine kinase  34.92 
 
 
508 aa  87.8  4e-17  Geobacter metallireducens GS-15  Bacteria  normal  0.0502065  normal 
 
 
-
 
NC_013456  VEA_001908  nitrogen regulation protein NR(I)  36.28 
 
 
467 aa  87.8  5e-17  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2092  two component, sigma54 specific, Fis family transcriptional regulator  38.6 
 
 
462 aa  87.4  5e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.131918 
 
 
-
 
NC_011138  MADE_01723  two-component system response regulator  37.6 
 
 
446 aa  87.4  6e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  39.82 
 
 
445 aa  87.4  6e-17  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0816  response regulator receiver protein  42.34 
 
 
157 aa  87.4  6e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
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