More than 300 homologs were found in PanDaTox collection
for query gene Dd703_0097 on replicon NC_012880
Organism: Dickeya dadantii Ech703



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012912  Dd1591_0082  two component, sigma54 specific, transcriptional regulator, Fis family  87.55 
 
 
466 aa  861  Dickeya zeae Ech1591  Bacteria  normal  0.728671  n/a   
 
 
-
 
NC_012880  Dd703_0097  two component, sigma54 specific, transcriptional regulator, Fis family  100 
 
 
466 aa  962  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2121  sigma-54 dependent DNA-binding response regulator  50.33 
 
 
465 aa  456  1e-127  Colwellia psychrerythraea 34H  Bacteria  normal  0.798408  n/a   
 
 
-
 
NC_003910  CPS_0778  sigma-54 dependent DNA-binding response regulator  46.75 
 
 
461 aa  452  1e-126  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0306  two component, sigma54 specific, Fis family transcriptional regulator  49.02 
 
 
457 aa  448  1e-125  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0689092 
 
 
-
 
NC_010571  Oter_1904  two component, sigma54 specific, Fis family transcriptional regulator  48.14 
 
 
456 aa  446  1e-124  Opitutus terrae PB90-1  Bacteria  normal  normal  0.865916 
 
 
-
 
NC_008009  Acid345_0374  two component, sigma54 specific, Fis family transcriptional regulator  47.7 
 
 
471 aa  445  1e-124  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.774685 
 
 
-
 
NC_003910  CPS_4418  sigma-54 dependent DNA-binding response regulator  47.52 
 
 
450 aa  433  1e-120  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0953  two component, sigma54 specific, transcriptional regulator, Fis family  45.63 
 
 
450 aa  398  1e-109  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.283523  normal 
 
 
-
 
NC_013730  Slin_4586  two component, sigma54 specific, transcriptional regulator, Fis family  45.08 
 
 
456 aa  393  1e-108  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00347472  normal 
 
 
-
 
NC_013037  Dfer_4836  two component, sigma54 specific, transcriptional regulator, Fis family  42.14 
 
 
456 aa  392  1e-108  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4704  sigma-54 dependent DNA-binding response regulator  39.54 
 
 
483 aa  353  4e-96  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5614  two component, sigma54 specific, transcriptional regulator, Fis family  41.25 
 
 
457 aa  349  7e-95  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG0747  sigma-54 dependent DNA-binding response regulator  41.7 
 
 
464 aa  347  2e-94  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_007912  Sde_0327  response regulator receiver domain-containing protein  40.47 
 
 
503 aa  347  3e-94  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.348784 
 
 
-
 
NC_002950  PG0016  sigma-54 dependent DNA-binding response regulator  39.09 
 
 
449 aa  343  3e-93  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.420092 
 
 
-
 
NC_008577  Shewana3_3257  two component, sigma54 specific, Fis family transcriptional regulator  38.76 
 
 
478 aa  342  1e-92  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_0470  two component, sigma54 specific, Fis family transcriptional regulator  39.08 
 
 
449 aa  338  1e-91  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3156  two component, sigma54 specific, Fis family transcriptional regulator  38.45 
 
 
484 aa  338  2e-91  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0866  two component, sigma54 specific, Fis family transcriptional regulator  38.37 
 
 
484 aa  338  2e-91  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1332  two component, sigma54 specific, Fis family transcriptional regulator  38.63 
 
 
447 aa  337  2e-91  Flavobacterium johnsoniae UW101  Bacteria  normal  0.311048  n/a   
 
 
-
 
NC_004347  SO_3689  sigma-54 dependent nitrogen response regulator  38.25 
 
 
475 aa  337  3e-91  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009943  Dole_0427  two component, sigma54 specific, Fis family transcriptional regulator  39.96 
 
 
458 aa  336  6e-91  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2347  two component, sigma54 specific, transcriptional regulator, Fis family  40.43 
 
 
456 aa  335  9e-91  Spirosoma linguale DSM 74  Bacteria  normal  0.229216  normal 
 
 
-
 
NC_013223  Dret_0077  two component, sigma54 specific, transcriptional regulator, Fis family  39.35 
 
 
457 aa  333  4e-90  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2984  two component, sigma54 specific, transcriptional regulator, Fis family  38.71 
 
 
458 aa  328  2e-88  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.826768  n/a   
 
 
-
 
NC_008009  Acid345_3356  two component, sigma54 specific, Fis family transcriptional regulator  38.96 
 
 
484 aa  327  3e-88  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0726  two component, sigma54 specific, Fis family transcriptional regulator  37.77 
 
 
494 aa  327  3e-88  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2847  sigma-54 factor, interaction region  35.06 
 
 
496 aa  326  4e-88  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3338  two component, sigma54 specific, Fis family transcriptional regulator  37.15 
 
 
493 aa  326  5e-88  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0853  two component, sigma54 specific, transcriptional regulator, Fis family  39.15 
 
 
459 aa  325  9e-88  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0538681  n/a   
 
 
-
 
NC_008700  Sama_2861  response regulator receiver protein  36.74 
 
 
504 aa  325  1e-87  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_3599  two component Fis family transcriptional regulator  39.02 
 
 
459 aa  323  4e-87  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_0576  sigma-54 dependent DNA-binding response regulator  41.38 
 
 
435 aa  323  4e-87  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4069  two component, sigma54 specific, Fis family transcriptional regulator  37.88 
 
 
485 aa  322  9e-87  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1777  two component, sigma54 specific, Fis family transcriptional regulator  39.1 
 
 
465 aa  321  2e-86  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1034  two component, sigma54 specific, Fis family transcriptional regulator  36.22 
 
 
503 aa  321  2e-86  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2269  two component, sigma54 specific, transcriptional regulator, Fis family  38.33 
 
 
456 aa  321  2e-86  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0823  two component, sigma54 specific, transcriptional regulator, Fis family  39.69 
 
 
456 aa  320  3e-86  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.449732 
 
 
-
 
NC_013440  Hoch_2280  two component, sigma54 specific, transcriptional regulator, Fis family  39.65 
 
 
453 aa  320  4e-86  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.620123 
 
 
-
 
NC_011663  Sbal223_1022  two component, sigma54 specific, transcriptional regulator, Fis family  36.35 
 
 
502 aa  319  5e-86  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0901  two component, sigma54 specific, transcriptional regulator, Fis family protein  36.38 
 
 
482 aa  319  7e-86  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.520731  n/a   
 
 
-
 
NC_009665  Shew185_1001  two component, sigma54 specific, Fis family transcriptional regulator  36.29 
 
 
502 aa  319  7e-86  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0168  two component, sigma54 specific, Fis family transcriptional regulator  39.23 
 
 
459 aa  319  8e-86  Desulfovibrio vulgaris DP4  Bacteria  normal  0.564625  normal  0.730975 
 
 
-
 
NC_013173  Dbac_2942  two component, sigma54 specific, transcriptional regulator, Fis family  39.22 
 
 
451 aa  317  2e-85  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  38.51 
 
 
465 aa  315  1e-84  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_007760  Adeh_1326  two component, sigma54 specific, Fis family transcriptional regulator  38.86 
 
 
485 aa  315  1e-84  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2629  two component, sigma54 specific, transcriptional regulator, Fis family  38.86 
 
 
483 aa  315  1e-84  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.14604  n/a   
 
 
-
 
NC_009253  Dred_2001  two component, sigma54 specific, Fis family transcriptional regulator  36.71 
 
 
454 aa  315  1e-84  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0838  two component, sigma54 specific, Fis family transcriptional regulator  39.44 
 
 
457 aa  314  2e-84  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2442  two component, sigma54 specific, Fis family transcriptional regulator  37.69 
 
 
480 aa  313  3e-84  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2915  sigma-54 dependent DNA-binding response regulator  38.54 
 
 
457 aa  314  3e-84  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  37.95 
 
 
463 aa  313  4e-84  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_011145  AnaeK_2533  two component, sigma54 specific, transcriptional regulator, Fis family  38.65 
 
 
483 aa  313  4e-84  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  38.68 
 
 
476 aa  313  5e-84  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  37.85 
 
 
473 aa  313  6e-84  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_008751  Dvul_0433  two component, sigma54 specific, Fis family transcriptional regulator  38.44 
 
 
472 aa  311  1e-83  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3719  two component, sigma54 specific, Fis family transcriptional regulator  35.91 
 
 
499 aa  311  1e-83  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.540881 
 
 
-
 
NC_011205  SeD_A4581  transcriptional regulatory protein ZraR  38.21 
 
 
441 aa  311  1e-83  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4385  transcriptional regulatory protein ZraR  38.21 
 
 
441 aa  311  1e-83  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.712665 
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  37.53 
 
 
442 aa  311  1e-83  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_013223  Dret_0097  two component, sigma54 specific, transcriptional regulator, Fis family  37.72 
 
 
448 aa  311  2e-83  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0437  two component, sigma54 specific, Fis family transcriptional regulator  37.45 
 
 
490 aa  311  2e-83  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1954  two component, sigma54 specific, transcriptional regulator, Fis family  37.12 
 
 
455 aa  311  2e-83  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_0976  two component, sigma54 specific, transcriptional regulator, Fis family  37.47 
 
 
442 aa  310  4e-83  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00434157  normal  0.514512 
 
 
-
 
NC_010814  Glov_2245  two component, sigma54 specific, transcriptional regulator, Fis family  36.67 
 
 
460 aa  310  5e-83  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3765  two component, sigma54 specific, Fis family transcriptional regulator  38.96 
 
 
463 aa  309  6e-83  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.000821276  normal 
 
 
-
 
NC_013173  Dbac_2713  two component, sigma54 specific, transcriptional regulator, Fis family  36.77 
 
 
454 aa  309  6e-83  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  36.58 
 
 
448 aa  309  6e-83  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1461  two component, sigma54 specific, transcriptional regulator, Fis family  37.27 
 
 
491 aa  309  6e-83  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.750458 
 
 
-
 
NC_013216  Dtox_0970  two component, sigma54 specific, transcriptional regulator, Fis family  35.96 
 
 
459 aa  309  7e-83  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000694494  normal  0.524712 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  38.01 
 
 
442 aa  309  7e-83  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2200  two component, sigma54 specific, transcriptional regulator, Fis family  39.02 
 
 
459 aa  309  7e-83  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  38.92 
 
 
455 aa  309  8e-83  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  37.37 
 
 
452 aa  309  8e-83  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1960  response regulator transcription factor  37.63 
 
 
471 aa  308  9e-83  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4507  transcriptional regulatory protein ZraR  37.55 
 
 
441 aa  309  9e-83  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0570238 
 
 
-
 
NC_011083  SeHA_C4505  transcriptional regulatory protein ZraR  37.77 
 
 
441 aa  308  9e-83  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.11324 
 
 
-
 
NC_011060  Ppha_1319  two component, sigma54 specific, transcriptional regulator, Fis family  37.82 
 
 
452 aa  308  1e-82  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2195  two component, sigma54 specific, transcriptional regulator, Fis family  37.2 
 
 
456 aa  308  1e-82  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B4418  transcriptional regulatory protein ZraR  37.99 
 
 
441 aa  308  1e-82  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.298897  n/a   
 
 
-
 
NC_007517  Gmet_0812  two component, sigma54 specific, Fis family transcriptional regulator  36.93 
 
 
453 aa  308  2e-82  Geobacter metallireducens GS-15  Bacteria  normal  0.0257022  hitchhiker  3.28811e-06 
 
 
-
 
NC_010814  Glov_0143  two component, sigma54 specific, transcriptional regulator, Fis family  39.26 
 
 
449 aa  308  2e-82  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0853  two component, sigma54 specific, Fis family transcriptional regulator  43.88 
 
 
502 aa  306  3e-82  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2678  two component, sigma-54 specific, Fis family transcriptional regulator  39.52 
 
 
457 aa  306  3e-82  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  36.5 
 
 
441 aa  307  3e-82  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1032  two component, sigma54 specific, Fis family transcriptional regulator  37.47 
 
 
461 aa  307  3e-82  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.454426 
 
 
-
 
NC_009675  Anae109_3581  two component, sigma54 specific, Fis family transcriptional regulator  36.53 
 
 
490 aa  306  4e-82  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0374719 
 
 
-
 
NC_011901  Tgr7_0038  response regulator receiver protein  37.42 
 
 
455 aa  306  4e-82  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  37.34 
 
 
489 aa  306  5e-82  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  36.29 
 
 
448 aa  306  5e-82  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0495  two component, sigma-54 specific, Fis family transcriptional regulator  36.58 
 
 
456 aa  306  6e-82  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2062  two component, sigma54 specific, transcriptional regulator, Fis family  38.71 
 
 
449 aa  306  7e-82  Geobacter sp. M21  Bacteria  n/a    hitchhiker  4.96565e-13 
 
 
-
 
NC_011145  AnaeK_3251  two component, sigma54 specific, transcriptional regulator, Fis family  37.77 
 
 
465 aa  305  1e-81  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  37.8 
 
 
442 aa  305  1e-81  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_007517  Gmet_1397  two component, sigma54 specific, Fis family transcriptional regulator  39.53 
 
 
458 aa  305  1e-81  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3361  two component, sigma54 specific, Fis family transcriptional regulator  40.92 
 
 
509 aa  305  1e-81  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  37.84 
 
 
466 aa  304  2e-81  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_013501  Rmar_1797  two component, sigma54 specific, transcriptional regulator, Fis family  37.61 
 
 
461 aa  305  2e-81  Rhodothermus marinus DSM 4252  Bacteria  normal  0.774224  n/a   
 
 
-
 
NC_011883  Ddes_0769  two component, sigma54 specific, transcriptional regulator, Fis family  37.31 
 
 
453 aa  305  2e-81  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.165448  n/a   
 
 
-
 
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