More than 300 homologs were found in PanDaTox collection
for query gene Dd1591_1413 on replicon NC_012912
Organism: Dickeya zeae Ech1591



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_02870  hydrogenase 2, large subunit  76.58 
 
 
567 aa  920    Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  76.58 
 
 
567 aa  920    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  55.58 
 
 
559 aa  652    Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0785  nickel-dependent hydrogenase, large subunit  55.99 
 
 
560 aa  663    Geobacter sulfurreducens PCA  Bacteria  normal  0.433799  n/a   
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  76.58 
 
 
567 aa  920    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
NC_011080  SNSL254_A3400  hydrogenase 2 large subunit  76.58 
 
 
567 aa  920    Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3971  nickel-dependent hydrogenase, large subunit  58.84 
 
 
570 aa  702    Dechloromonas aromatica RCB  Bacteria  normal  0.533836  normal 
 
 
-
 
NC_011083  SeHA_C3394  hydrogenase 2 large subunit  76.58 
 
 
567 aa  920    Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.571998 
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  76.41 
 
 
567 aa  918    Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A3495  hydrogenase 2 large subunit  76.58 
 
 
567 aa  920    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.233634  normal 
 
 
-
 
NC_011149  SeAg_B3320  hydrogenase 2 large subunit  76.76 
 
 
567 aa  922    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.118706  n/a   
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  55.22 
 
 
559 aa  651    Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012892  B21_02819  hypothetical protein  76.58 
 
 
567 aa  920    Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1946  nickel-dependent hydrogenase, large subunit  54.75 
 
 
560 aa  645    Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0478  nickel-dependent hydrogenase, large subunit  55.61 
 
 
577 aa  635    Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0506  nickel-dependent hydrogenase large subunit  56.48 
 
 
577 aa  643    Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3280  hydrogenase 2 large subunit  76.58 
 
 
567 aa  920    Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_4091  nickel-dependent hydrogenase, large subunit  61.77 
 
 
568 aa  733    Rhodoferax ferrireducens T118  Bacteria  normal  0.0995107  n/a   
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  76.58 
 
 
567 aa  920    Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A3329  hydrogenase 2 large subunit  76.58 
 
 
567 aa  921    Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  57.52 
 
 
567 aa  659    Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  76.58 
 
 
567 aa  920    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0523  nickel-dependent hydrogenase large subunit  56.21 
 
 
578 aa  647    Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2503  nickel-dependent hydrogenase, large subunit  60.81 
 
 
567 aa  716    Magnetococcus sp. MC-1  Bacteria  normal  normal  0.153272 
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  55.3 
 
 
559 aa  646    Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1413  hydrogenase 2 large subunit  100 
 
 
568 aa  1179    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3463  hydrogenase 2 large subunit  76.58 
 
 
567 aa  920    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0511  nickel-dependent hydrogenase large subunit  56.3 
 
 
577 aa  642    Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2531  hydrogenase 2 large subunit  94.72 
 
 
568 aa  1131    Dickeya dadantii Ech703  Bacteria  normal  0.597514  n/a   
 
 
-
 
NC_008009  Acid345_4240  nickel-dependent hydrogenase, large subunit  54.05 
 
 
563 aa  634  1e-180  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_0544  nickel-dependent hydrogenase, large subunit  49.05 
 
 
566 aa  557  1e-157  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  48.79 
 
 
566 aa  549  1e-155  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  48.1 
 
 
569 aa  540  9.999999999999999e-153  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3147  nickel-dependent hydrogenase large subunit  48.45 
 
 
570 aa  535  1e-151  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2320  nickel-dependent hydrogenase, large subunit  48.28 
 
 
570 aa  535  1e-151  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_3331  nickel-dependent hydrogenase, large subunit  48.44 
 
 
566 aa  533  1e-150  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  46.42 
 
 
573 aa  533  1e-150  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_002939  GSU0122  nickel-dependent hydrogenase, large subunit  48.18 
 
 
564 aa  529  1e-149  Geobacter sulfurreducens PCA  Bacteria  normal  0.254382  n/a   
 
 
-
 
NC_008639  Cpha266_0973  nickel-dependent hydrogenase, large subunit  46.6 
 
 
572 aa  516  1.0000000000000001e-145  Chlorobium phaeobacteroides DSM 266  Bacteria  decreased coverage  0.000120136  n/a   
 
 
-
 
NC_010803  Clim_0856  nickel-dependent hydrogenase large subunit  46.6 
 
 
572 aa  512  1e-144  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  46.57 
 
 
546 aa  514  1e-144  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_007512  Plut_1447  hydrogenase large chain  47.52 
 
 
572 aa  506  9.999999999999999e-143  Chlorobium luteolum DSM 273  Bacteria  normal  0.333249  normal 
 
 
-
 
NC_011059  Paes_0854  nickel-dependent hydrogenase large subunit  46.77 
 
 
572 aa  508  9.999999999999999e-143  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.255543 
 
 
-
 
NC_011761  AFE_3286  [Ni/Fe] hydrogenase, large subunit  46.3 
 
 
585 aa  506  9.999999999999999e-143  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2884  nickel-dependent hydrogenase large subunit  46.3 
 
 
585 aa  506  9.999999999999999e-143  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.308731  normal 
 
 
-
 
NC_010831  Cphamn1_1592  nickel-dependent hydrogenase large subunit  46.84 
 
 
572 aa  502  1e-141  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.663154  normal 
 
 
-
 
NC_009441  Fjoh_3907  nickel-dependent hydrogenase, large subunit  45.11 
 
 
578 aa  501  1e-140  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1375  Ni-Fe hydrogenase large chain  45.95 
 
 
596 aa  499  1e-140  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0200361  normal 
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  45.81 
 
 
600 aa  496  1e-139  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  45.81 
 
 
600 aa  496  1e-139  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3368  nickel-dependent hydrogenase large subunit  46.83 
 
 
570 aa  498  1e-139  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  47.33 
 
 
570 aa  498  1e-139  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  45.81 
 
 
600 aa  496  1e-139  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  45.81 
 
 
600 aa  496  1e-139  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_011060  Ppha_1861  nickel-dependent hydrogenase large subunit  46.09 
 
 
572 aa  496  1e-139  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  45.64 
 
 
600 aa  495  1e-139  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1266  Ni-Fe hydrogenase large chain  46.11 
 
 
583 aa  492  9.999999999999999e-139  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2138  periplasmic (NiFe) hydrogenase, large subunit, isozyme 1  46.83 
 
 
568 aa  489  1e-137  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1163  nickel-dependent hydrogenase, large subunit  45.53 
 
 
597 aa  489  1e-137  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.28682  normal 
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  46.8 
 
 
595 aa  491  1e-137  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3771  nickel-dependent hydrogenase, large subunit  44.52 
 
 
597 aa  484  1e-135  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.292608  normal  0.910106 
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  46.21 
 
 
566 aa  483  1e-135  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_009485  BBta_1997  uptake hydrogenase large subunit precursor  44.59 
 
 
596 aa  481  1e-134  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1155  nickel-dependent hydrogenase large subunit  44.26 
 
 
597 aa  480  1e-134  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.295857  n/a   
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  45.5 
 
 
566 aa  480  1e-134  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  45.3 
 
 
567 aa  478  1e-133  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010655  Amuc_2129  nickel-dependent hydrogenase large subunit  45.63 
 
 
585 aa  476  1e-133  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  0.85862  normal 
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  44.96 
 
 
567 aa  476  1e-133  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  45.86 
 
 
567 aa  477  1e-133  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  44.79 
 
 
567 aa  476  1e-133  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1162  nickel-dependent hydrogenase, large subunit  44.52 
 
 
596 aa  474  1e-132  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.122791  n/a   
 
 
-
 
NC_011138  MADE_00347  Ni-Fe hydrogenase large chain  43.02 
 
 
625 aa  472  1e-132  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  44.35 
 
 
567 aa  469  1.0000000000000001e-131  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  44.35 
 
 
567 aa  469  1.0000000000000001e-131  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  45.1 
 
 
567 aa  471  1.0000000000000001e-131  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  44.35 
 
 
567 aa  469  1.0000000000000001e-131  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3988  nickel-dependent hydrogenase, large subunit  44.2 
 
 
598 aa  468  9.999999999999999e-131  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0165  nickel-iron hydrogenase, large subunit  44.09 
 
 
597 aa  465  1e-129  Methylococcus capsulatus str. Bath  Bacteria  normal  0.0497936  n/a   
 
 
-
 
NC_011146  Gbem_1368  nickel-dependent hydrogenase large subunit  44.44 
 
 
571 aa  462  1e-129  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  44.79 
 
 
567 aa  459  9.999999999999999e-129  Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_009665  Shew185_1914  nickel-dependent hydrogenase large subunit  44.79 
 
 
567 aa  461  9.999999999999999e-129  Shewanella baltica OS185  Bacteria  normal  0.392356  n/a   
 
 
-
 
NC_012560  Avin_50580  Membrane bound nickel-dependent hydrogenase, large subunit, HoxG  43.87 
 
 
602 aa  459  9.999999999999999e-129  Azotobacter vinelandii DJ  Bacteria  normal  0.980558  n/a   
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  44.79 
 
 
567 aa  461  9.999999999999999e-129  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  44.79 
 
 
567 aa  461  9.999999999999999e-129  Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  43.8 
 
 
567 aa  456  1e-127  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  43.86 
 
 
569 aa  455  1e-127  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00976  hydrogenase 1, large subunit  42.93 
 
 
597 aa  454  1.0000000000000001e-126  Escherichia coli BL21(DE3)  Bacteria  normal  0.170036  n/a   
 
 
-
 
CP001637  EcDH1_2671  nickel-dependent hydrogenase large subunit  42.93 
 
 
597 aa  454  1.0000000000000001e-126  Escherichia coli DH1  Bacteria  hitchhiker  0.00020942  n/a   
 
 
-
 
NC_010658  SbBS512_E2342  hydrogenase 1 large subunit  42.93 
 
 
597 aa  454  1.0000000000000001e-126  Shigella boydii CDC 3083-94  Bacteria  normal  0.514327  n/a   
 
 
-
 
NC_011353  ECH74115_1209  hydrogenase 1 large subunit  42.93 
 
 
597 aa  454  1.0000000000000001e-126  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1081  hydrogenase 1 large subunit  42.93 
 
 
597 aa  454  1.0000000000000001e-126  Escherichia coli HS  Bacteria  normal  0.674487  n/a   
 
 
-
 
NC_009801  EcE24377A_1088  hydrogenase 1 large subunit  42.93 
 
 
597 aa  454  1.0000000000000001e-126  Escherichia coli E24377A  Bacteria  hitchhiker  0.000594285  n/a   
 
 
-
 
NC_012892  B21_00983  hypothetical protein  42.93 
 
 
597 aa  454  1.0000000000000001e-126  Escherichia coli BL21  Bacteria  normal  0.201249  n/a   
 
 
-
 
NC_010498  EcSMS35_2144  hydrogenase 1 large subunit  42.93 
 
 
597 aa  454  1.0000000000000001e-126  Escherichia coli SMS-3-5  Bacteria  normal  0.375749  normal  0.757738 
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  45.03 
 
 
568 aa  452  1.0000000000000001e-126  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  42.52 
 
 
598 aa  451  1e-125  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_007493  RSP_0496  hydrogenase protein large subunit  42.28 
 
 
596 aa  449  1e-125  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2915  nickel-dependent hydrogenase large subunit  42.74 
 
 
571 aa  450  1e-125  Geobacter sp. M21  Bacteria  n/a    normal  0.289083 
 
 
-
 
NC_011883  Ddes_0836  nickel-dependent hydrogenase large subunit  42.44 
 
 
604 aa  449  1e-125  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2147  nickel-dependent hydrogenase, large subunit  42.28 
 
 
596 aa  449  1e-125  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0605986  normal  0.266797 
 
 
-
 
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