More than 300 homologs were found in PanDaTox collection
for query gene Daci_2132 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_2132  Crp/FNR family transcriptional regulator  100 
 
 
231 aa  471  1e-132  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00647195  normal  0.364317 
 
 
-
 
NC_007347  Reut_A0259  cyclic nucleotide-binding protein  44.14 
 
 
222 aa  188  5.999999999999999e-47  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0213  cyclic nucleotide-binding protein  44.39 
 
 
259 aa  184  9e-46  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0681  Crp/FNR family transcriptional regulator  42.4 
 
 
234 aa  184  1.0000000000000001e-45  Polaromonas sp. JS666  Bacteria  normal  0.0670228  normal  0.546641 
 
 
-
 
NC_007336  Reut_C5944  cyclic nucleotide-binding  40.54 
 
 
228 aa  182  3e-45  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0248  cyclic nucleotide-binding  40.45 
 
 
224 aa  172  2.9999999999999996e-42  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4138  putative transcriptional regulator, Crp/Fnr family  45.45 
 
 
234 aa  172  5e-42  Ralstonia pickettii 12D  Bacteria  normal  0.60462  normal 
 
 
-
 
NC_010678  Rpic_4026  cyclic nucleotide-binding protein  45.45 
 
 
234 aa  172  5e-42  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3605  CRP/FNR family transcriptional regulator  40.72 
 
 
235 aa  167  1e-40  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.391558 
 
 
-
 
NC_012791  Vapar_5005  transcriptional regulator, Crp/Fnr family  40.45 
 
 
261 aa  167  1e-40  Variovorax paradoxus S110  Bacteria  normal  0.62031  n/a   
 
 
-
 
NC_009485  BBta_5713  transcriptional regulator  38.81 
 
 
224 aa  163  2.0000000000000002e-39  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.590376  normal 
 
 
-
 
NC_011992  Dtpsy_0464  transcriptional regulator, Crp/Fnr family  40.45 
 
 
272 aa  163  2.0000000000000002e-39  Acidovorax ebreus TPSY  Bacteria  normal  0.0498511  n/a   
 
 
-
 
NC_008782  Ajs_0473  Crp/FNR family transcriptional regulator  40.45 
 
 
272 aa  162  3e-39  Acidovorax sp. JS42  Bacteria  normal  normal  0.144164 
 
 
-
 
NC_007908  Rfer_3543  Crp/FNR family transcriptional regulator  39.55 
 
 
236 aa  162  4.0000000000000004e-39  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1160  Crp/FNR family transcriptional regulator  41.12 
 
 
242 aa  162  5.0000000000000005e-39  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0605  Crp/FNR family transcriptional regulator  39.55 
 
 
252 aa  162  6e-39  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00101565  normal 
 
 
-
 
NC_010524  Lcho_3433  Crp/FNR family transcriptional regulator  39.63 
 
 
251 aa  157  1e-37  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00135571 
 
 
-
 
NC_010676  Bphyt_6768  cyclic nucleotide-binding protein  41.71 
 
 
248 aa  155  5.0000000000000005e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  0.1826  normal  0.270362 
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  36.32 
 
 
285 aa  155  5.0000000000000005e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_008752  Aave_4295  Crp/FNR family transcriptional regulator  41.36 
 
 
265 aa  155  6e-37  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_5483  transcriptional regulator, Crp/Fnr family  38.84 
 
 
230 aa  152  2.9999999999999998e-36  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5767  putative HTH Crp family transcriptional regulator  39.81 
 
 
253 aa  153  2.9999999999999998e-36  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4072  cyclic nucleotide-binding protein  36.54 
 
 
247 aa  150  2e-35  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.426596  n/a   
 
 
-
 
NC_008543  Bcen2424_4294  cyclic nucleotide-binding protein  36.54 
 
 
247 aa  150  2e-35  Burkholderia cenocepacia HI2424  Bacteria  normal  0.803161  normal  0.987027 
 
 
-
 
NC_007952  Bxe_B2783  cyclic nucleotide-binding domain-containing protein  40 
 
 
248 aa  149  3e-35  Burkholderia xenovorans LB400  Bacteria  normal  0.778441  normal 
 
 
-
 
NC_012791  Vapar_0075  putative transcriptional regulator, Crp/Fnr family  39.37 
 
 
236 aa  149  3e-35  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3223  cyclic nucleotide-binding protein  36.54 
 
 
247 aa  149  3e-35  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.319468 
 
 
-
 
NC_007511  Bcep18194_B1725  cyclic nucleotide-binding domain-containing protein  34.08 
 
 
251 aa  148  7e-35  Burkholderia sp. 383  Bacteria  normal  0.134143  normal 
 
 
-
 
NC_009078  BURPS1106A_A0992  cyclic nucleotide-binding domain-containing protein  40.43 
 
 
289 aa  148  9e-35  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0799157  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2305  cyclic nucleotide-binding domain-containing protein  40.43 
 
 
309 aa  147  1.0000000000000001e-34  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1075  cyclic nucleotide-binding protein  40.43 
 
 
281 aa  147  1.0000000000000001e-34  Burkholderia pseudomallei 668  Bacteria  normal  0.179519  n/a   
 
 
-
 
NC_006349  BMAA1395  cyclic nucleotide-binding domain-containing protein  39.89 
 
 
304 aa  146  2.0000000000000003e-34  Burkholderia mallei ATCC 23344  Bacteria  normal  0.553188  n/a   
 
 
-
 
NC_007650  BTH_II1687  cyclic nucleotide-binding domain-containing protein  40.43 
 
 
299 aa  146  3e-34  Burkholderia thailandensis E264  Bacteria  normal  0.535238  n/a   
 
 
-
 
NC_009079  BMA10247_A1475  cyclic nucleotide-binding protein  39.89 
 
 
284 aa  146  3e-34  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0137  cyclic nucleotide-binding domain-containing protein  39.89 
 
 
284 aa  146  3e-34  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0510  cyclic nucleotide-binding domain-containing protein  39.89 
 
 
284 aa  146  3e-34  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3712  cyclic nucleotide-binding protein  34.08 
 
 
259 aa  145  4.0000000000000006e-34  Burkholderia ambifaria AMMD  Bacteria  normal  0.971291  normal 
 
 
-
 
NC_010552  BamMC406_4190  cyclic nucleotide-binding protein  37.97 
 
 
262 aa  144  2e-33  Burkholderia ambifaria MC40-6  Bacteria  normal  0.456577  normal 
 
 
-
 
NC_007348  Reut_B4309  cyclic nucleotide-binding  37.44 
 
 
232 aa  139  3e-32  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0608  putative transcriptional regulator, Crp/Fnr family  44.72 
 
 
161 aa  139  3e-32  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6150  transcriptional regulator, Crp/Fnr family  34.51 
 
 
226 aa  137  1e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0018  transcriptional regulator, Crp/Fnr family  35.56 
 
 
232 aa  134  9.999999999999999e-31  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0023  transcriptional regulator, Crp/Fnr family  35.56 
 
 
232 aa  134  9.999999999999999e-31  Ralstonia pickettii 12J  Bacteria  normal  normal  0.781949 
 
 
-
 
NC_007948  Bpro_2580  Crp/FNR family transcriptional regulator  40.94 
 
 
231 aa  118  7e-26  Polaromonas sp. JS666  Bacteria  normal  normal  0.117752 
 
 
-
 
NC_007908  Rfer_2394  Crp/FNR family transcriptional regulator  35.29 
 
 
255 aa  115  5e-25  Rhodoferax ferrireducens T118  Bacteria  normal  0.0405792  n/a   
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  28.35 
 
 
235 aa  83.2  0.000000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_010002  Daci_3287  Crp/FNR family transcriptional regulator  28.39 
 
 
239 aa  81.6  0.000000000000009  Delftia acidovorans SPH-1  Bacteria  normal  0.370075  normal  0.683237 
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  29.47 
 
 
237 aa  81.3  0.00000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  26.89 
 
 
239 aa  81.3  0.00000000000001  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_008390  Bamb_2589  Crp/FNR family transcriptional regulator  27.94 
 
 
235 aa  80.5  0.00000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.0679634  n/a   
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  27.73 
 
 
239 aa  79.3  0.00000000000004  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  26.85 
 
 
226 aa  79  0.00000000000006  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  27.96 
 
 
237 aa  78.6  0.00000000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  28.35 
 
 
235 aa  78.6  0.00000000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  32.83 
 
 
243 aa  77.8  0.0000000000001  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  32.83 
 
 
243 aa  77.8  0.0000000000001  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  28.51 
 
 
225 aa  77.8  0.0000000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A5872  Crp/FNR family transcriptional regulator  27.89 
 
 
235 aa  77  0.0000000000002  Burkholderia sp. 383  Bacteria  normal  0.142608  normal  0.264846 
 
 
-
 
NC_008782  Ajs_1779  Crp/FNR family transcriptional regulator  27.43 
 
 
239 aa  77.4  0.0000000000002  Acidovorax sp. JS42  Bacteria  normal  0.72161  normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.51 
 
 
225 aa  77.4  0.0000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007948  Bpro_2959  Crp/FNR family transcriptional regulator  28.33 
 
 
241 aa  77.4  0.0000000000002  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1929  Crp/FNR family transcriptional regulator  27.84 
 
 
235 aa  77.4  0.0000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.589711  n/a   
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  27.84 
 
 
235 aa  77.4  0.0000000000002  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  28.44 
 
 
228 aa  77.4  0.0000000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  24.32 
 
 
238 aa  77.4  0.0000000000002  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_003296  RS01902  putative transcription regulator protein  31.66 
 
 
239 aa  76.6  0.0000000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  0.980965  normal  0.145891 
 
 
-
 
NC_007651  BTH_I0747  transcriptional regulator, putative  29.23 
 
 
266 aa  76.3  0.0000000000004  Burkholderia thailandensis E264  Bacteria  normal  0.59923  n/a   
 
 
-
 
NC_008752  Aave_3075  Crp/FNR family transcriptional regulator  29.95 
 
 
239 aa  75.5  0.0000000000007  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.193734 
 
 
-
 
NC_010002  Daci_4994  cyclic nucleotide-binding protein  29.15 
 
 
247 aa  74.3  0.000000000001  Delftia acidovorans SPH-1  Bacteria  normal  0.103725  normal 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  23.5 
 
 
231 aa  73.9  0.000000000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  23.5 
 
 
231 aa  73.9  0.000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  28.07 
 
 
229 aa  73.9  0.000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  28.05 
 
 
228 aa  73.9  0.000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  24.77 
 
 
229 aa  72.8  0.000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_006348  BMA2266  transcriptional regulator, putative  25.39 
 
 
251 aa  72.4  0.000000000005  Burkholderia mallei ATCC 23344  Bacteria  normal  0.578468  n/a   
 
 
-
 
NC_007434  BURPS1710b_1089  cyclic nucleotide-binding protein  25.39 
 
 
251 aa  72.4  0.000000000005  Burkholderia pseudomallei 1710b  Bacteria  normal  0.30583  n/a   
 
 
-
 
NC_009076  BURPS1106A_0938  cyclic nucleotide-binding protein  25.39 
 
 
251 aa  72.4  0.000000000005  Burkholderia pseudomallei 1106a  Bacteria  normal  0.914927  n/a   
 
 
-
 
NC_009080  BMA10247_2143  putative transcriptional regulator  25.39 
 
 
251 aa  72.4  0.000000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0934  cyclic nucleotide-binding  25.39 
 
 
251 aa  72.4  0.000000000005  Burkholderia pseudomallei 668  Bacteria  normal  0.059861  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  26.02 
 
 
230 aa  72  0.000000000008  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  26.02 
 
 
230 aa  72  0.000000000008  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  26.02 
 
 
230 aa  72  0.000000000008  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  26.02 
 
 
230 aa  72  0.000000000008  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  26.02 
 
 
229 aa  71.6  0.000000000009  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  26.02 
 
 
229 aa  71.6  0.000000000009  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  26.02 
 
 
229 aa  71.6  0.000000000009  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  25.13 
 
 
216 aa  71.2  0.00000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.09 
 
 
225 aa  71.6  0.00000000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  25.51 
 
 
229 aa  70.1  0.00000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  28.91 
 
 
228 aa  70.5  0.00000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1951  Crp/FNR family transcriptional regulator  32.13 
 
 
234 aa  70.1  0.00000000003  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.1084 
 
 
-
 
NC_007908  Rfer_3326  Crp/FNR family transcriptional regulator  26.29 
 
 
239 aa  70.1  0.00000000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  25.91 
 
 
228 aa  69.7  0.00000000003  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  25.79 
 
 
243 aa  70.1  0.00000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_013456  VEA_003082  transcriptional regulator Crp/Fnr family  28.72 
 
 
231 aa  69.7  0.00000000004  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00863529  n/a   
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  29.74 
 
 
227 aa  69.3  0.00000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2608  CRP/FNR family transcriptional regulator  29.38 
 
 
239 aa  68.9  0.00000000006  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.700213  normal  0.0258786 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  28.7 
 
 
226 aa  68.9  0.00000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_008786  Veis_4308  cyclic nucleotide-binding protein  27.57 
 
 
239 aa  68.6  0.00000000008  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0411784  normal 
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  25.65 
 
 
235 aa  68.6  0.00000000009  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
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