More than 300 homologs were found in PanDaTox collection
for query gene Cthe_1962 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_1962  RluA family pseudouridine synthase  100 
 
 
320 aa  654    Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000134652  n/a   
 
 
-
 
NC_011898  Ccel_0347  pseudouridine synthase, RluA family  53.63 
 
 
303 aa  299  5e-80  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1224  pseudouridylate synthase  37.5 
 
 
324 aa  189  7e-47  Clostridium perfringens SM101  Bacteria  decreased coverage  0.00465403  n/a   
 
 
-
 
NC_008261  CPF_1414  RluA family pseudouridine synthase  37.5 
 
 
324 aa  188  8e-47  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.003829  n/a   
 
 
-
 
NC_011374  UUR10_0123  pseudouridine synthase  34.86 
 
 
315 aa  178  1e-43  Ureaplasma urealyticum serovar 10 str. ATCC 33699  Bacteria  normal  0.352108  n/a   
 
 
-
 
NC_012034  Athe_1557  pseudouridine synthase  34.85 
 
 
311 aa  174  1.9999999999999998e-42  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.343366  n/a   
 
 
-
 
NC_010001  Cphy_2789  RluA family pseudouridine synthase  35.31 
 
 
346 aa  169  8e-41  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0059  RluA family pseudouridine synthase  33.94 
 
 
339 aa  165  8e-40  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.14313 
 
 
-
 
NC_011145  AnaeK_0061  pseudouridine synthase, RluA family  36.49 
 
 
339 aa  164  1.0000000000000001e-39  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0893  pseudouridine synthase, RluA family  36.01 
 
 
318 aa  164  2.0000000000000002e-39  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0073  pseudouridine synthase, RluA family  36.49 
 
 
339 aa  164  2.0000000000000002e-39  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0056  ribosomal large subunit pseudouridine synthase C  35.47 
 
 
339 aa  161  1e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_1186  ribosomal large subunit pseudouridine synthase D  33 
 
 
300 aa  146  4.0000000000000006e-34  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000204845  n/a   
 
 
-
 
NC_002936  DET1375  ribosomal large subunit pseudouridine synthase D  33.56 
 
 
300 aa  141  1.9999999999999998e-32  Dehalococcoides ethenogenes 195  Bacteria  unclonable  0.00000447138  n/a   
 
 
-
 
NC_013552  DhcVS_1156  ribosomal large subunit pseudouridine synthase, RluD subfamily  32.34 
 
 
302 aa  138  1e-31  Dehalococcoides sp. VS  Bacteria  normal  0.0116106  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3719  RluA family pseudouridine synthase  32.65 
 
 
302 aa  135  7.000000000000001e-31  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_008528  OEOE_1079  ribosomal large subunit pseudouridine synthase D  33.21 
 
 
304 aa  135  9e-31  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0310  RluA family pseudouridine synthase  32.77 
 
 
303 aa  135  9.999999999999999e-31  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0919  RluA family pseudouridine synthase  35.29 
 
 
293 aa  135  9.999999999999999e-31  Thermosipho melanesiensis BI429  Bacteria  normal  0.976861  n/a   
 
 
-
 
NC_008576  Mmc1_1777  ribosomal large subunit pseudouridine synthase C  30.09 
 
 
328 aa  133  3e-30  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00553261  decreased coverage  0.000101871 
 
 
-
 
NC_009253  Dred_1348  RluA family pseudouridine synthase  34.53 
 
 
303 aa  133  3.9999999999999996e-30  Desulfotomaculum reducens MI-1  Bacteria  normal  0.628416  n/a   
 
 
-
 
NC_010831  Cphamn1_1044  pseudouridine synthase, RluA family  30.77 
 
 
346 aa  132  7.999999999999999e-30  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_1440  pseudouridine synthase, RluA family  29.72 
 
 
347 aa  132  7.999999999999999e-30  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.738263  normal 
 
 
-
 
NC_006055  Mfl563  23S rRNA pseudouridine synthase  32.19 
 
 
323 aa  130  4.0000000000000003e-29  Mesoplasma florum L1  Bacteria  normal  0.0451901  n/a   
 
 
-
 
NC_006274  BCZK3651  pseudouridylate synthase (pseudouridine synthase)  31.62 
 
 
302 aa  129  6e-29  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000169242  n/a   
 
 
-
 
NC_011658  BCAH187_A3944  ribosomal large subunit pseudouridine synthase, RluA family  31.27 
 
 
302 aa  129  7.000000000000001e-29  Bacillus cereus AH187  Bacteria  unclonable  0.00000000328194  n/a   
 
 
-
 
NC_011773  BCAH820_3906  ribosomal large subunit pseudouridine synthase, RluA family  31.27 
 
 
302 aa  129  9.000000000000001e-29  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000340417 
 
 
-
 
NC_003909  BCE_3937  ribosomal large subunit pseudouridine synthase D  31.27 
 
 
302 aa  129  9.000000000000001e-29  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000762664  n/a   
 
 
-
 
NC_005945  BAS3743  RNA pseudouridylate synthase  31.27 
 
 
302 aa  129  9.000000000000001e-29  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00315275  n/a   
 
 
-
 
NC_011725  BCB4264_A3993  ribosomal large subunit pseudouridine synthase, RluA family  31.62 
 
 
302 aa  128  1.0000000000000001e-28  Bacillus cereus B4264  Bacteria  decreased coverage  0.000288046  n/a   
 
 
-
 
NC_010424  Daud_0949  RluA family pseudouridine synthase  30.43 
 
 
309 aa  128  1.0000000000000001e-28  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3056  pseudouridine synthase, RluA family  33.45 
 
 
305 aa  127  2.0000000000000002e-28  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1840  RluA family pseudouridine synthase  32.09 
 
 
304 aa  127  2.0000000000000002e-28  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3634  ribosomal large subunit pseudouridine synthase D  30.93 
 
 
302 aa  127  3e-28  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0043574  n/a   
 
 
-
 
NC_007512  Plut_0783  pseudouridine synthase, RluD  29.89 
 
 
354 aa  127  3e-28  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_010830  Aasi_0665  hypothetical protein  29.48 
 
 
341 aa  127  3e-28  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal 
 
 
-
 
NC_008825  Mpe_A0657  ribosomal large subunit pseudouridine synthase C  30.07 
 
 
320 aa  126  4.0000000000000003e-28  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.422678 
 
 
-
 
NC_011899  Hore_09330  ribosomal large subunit pseudouridine synthase D  32.52 
 
 
308 aa  127  4.0000000000000003e-28  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00125155  n/a   
 
 
-
 
NC_007530  GBAA_4031  ribosomal large subunit pseudouridine synthase  30.93 
 
 
302 aa  126  5e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00039208  n/a   
 
 
-
 
NC_012850  Rleg_2086  pseudouridine synthase, RluA family  31.75 
 
 
330 aa  126  5e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.140778  normal  0.342789 
 
 
-
 
NC_013172  Bfae_22770  pseudouridine synthase, RluA family  30.22 
 
 
318 aa  126  5e-28  Brachybacterium faecium DSM 4810  Bacteria  normal  0.191328  n/a   
 
 
-
 
NC_011772  BCG9842_B1248  ribosomal large subunit pseudouridine synthase, RluA family  32.16 
 
 
302 aa  125  9e-28  Bacillus cereus G9842  Bacteria  decreased coverage  0.000362529  normal 
 
 
-
 
NC_009486  Tpet_1802  RluA family pseudouridine synthase  32.09 
 
 
304 aa  125  1e-27  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_1589  ribosomal large subunit pseudouridine synthase C  31 
 
 
308 aa  125  1e-27  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.0462053  n/a   
 
 
-
 
NC_008261  CPF_2377  RluA family pseudouridine synthase  34.83 
 
 
298 aa  125  1e-27  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4165  ribosomal large subunit pseudouridine synthase C  30.59 
 
 
320 aa  124  2e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0336491  normal  0.921895 
 
 
-
 
NC_010511  M446_6367  RluA family pseudouridine synthase  32 
 
 
469 aa  124  2e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.129788  normal  0.347421 
 
 
-
 
NC_010803  Clim_1495  pseudouridine synthase, RluA family  28.01 
 
 
354 aa  124  2e-27  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1875  RluA family pseudouridine synthase  31 
 
 
317 aa  124  2e-27  Marinobacter aquaeolei VT8  Bacteria  normal  0.763374  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0596  ribosomal large subunit pseudouridine synthase C  30.67 
 
 
308 aa  124  3e-27  Coxiella burnetii RSA 331  Bacteria  hitchhiker  0.00000000000579613  n/a   
 
 
-
 
NC_012793  GWCH70_0522  pseudouridine synthase, RluA family  33.98 
 
 
304 aa  123  4e-27  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2089  pseudouridylate synthase family protein, yabo  34.48 
 
 
298 aa  123  4e-27  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1884  pseudouridine synthase, RluA family  31.14 
 
 
329 aa  123  4e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0958449  normal  0.0260992 
 
 
-
 
NC_011060  Ppha_1798  pseudouridine synthase, RluA family  28.27 
 
 
349 aa  123  5e-27  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2844  pseudouridine synthase, RluD  32.89 
 
 
324 aa  122  6e-27  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.546073  n/a   
 
 
-
 
NC_009439  Pmen_1620  ribosomal large subunit pseudouridine synthase C  30.07 
 
 
332 aa  122  7e-27  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00181118  normal  0.877955 
 
 
-
 
NC_009674  Bcer98_2541  RluA family pseudouridine synthase  30.85 
 
 
302 aa  122  9.999999999999999e-27  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.15335  n/a   
 
 
-
 
NC_004578  PSPTO_3840  ribosomal large subunit pseudouridine synthase C  29.84 
 
 
318 aa  122  9.999999999999999e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.283554  n/a   
 
 
-
 
NC_011894  Mnod_7124  pseudouridine synthase, RluA family  30.29 
 
 
457 aa  122  9.999999999999999e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1102  RluA family pseudouridine synthase  31.06 
 
 
314 aa  121  1.9999999999999998e-26  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02339  ribosomal large subunit pseudouridine synthase C (pseudouridylate synthase) (uracil hydrolyase  31.18 
 
 
313 aa  121  1.9999999999999998e-26  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.336245  n/a   
 
 
-
 
NC_011757  Mchl_0322  pseudouridine synthase, RluA family  29.82 
 
 
468 aa  120  1.9999999999999998e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.539792  normal  0.101143 
 
 
-
 
NC_013204  Elen_1559  pseudouridine synthase, RluA family  28.81 
 
 
344 aa  121  1.9999999999999998e-26  Eggerthella lenta DSM 2243  Bacteria  normal  0.627219  hitchhiker  0.0055148 
 
 
-
 
NC_011989  Avi_2261  ribosomal large subunit pseudouridine synthase C  29.43 
 
 
330 aa  120  1.9999999999999998e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0278  RluA family pseudouridine synthase  29.82 
 
 
468 aa  120  3e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1639  pseudouridine synthase, RluD  30.17 
 
 
318 aa  120  3e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.289887 
 
 
-
 
NC_011989  Avi_3536  ribosomal large subunit pseudouridine synthase RluD subfamily  30.88 
 
 
342 aa  120  3e-26  Agrobacterium vitis S4  Bacteria  normal  0.618363  n/a   
 
 
-
 
NC_010322  PputGB1_1482  RluA family pseudouridine synthase  31.39 
 
 
333 aa  120  3e-26  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.00286389  normal 
 
 
-
 
NC_007406  Nwi_1394  pseudouridine synthase, RluD  29.22 
 
 
412 aa  120  3.9999999999999996e-26  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.377241  normal 
 
 
-
 
NC_007643  Rru_A1111  ribosomal large subunit pseudouridine synthase D  29.08 
 
 
343 aa  120  3.9999999999999996e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.522532  n/a   
 
 
-
 
NC_011992  Dtpsy_2642  pseudouridine synthase, RluA family  30.42 
 
 
339 aa  120  3.9999999999999996e-26  Acidovorax ebreus TPSY  Bacteria  normal  0.704369  n/a   
 
 
-
 
NC_010725  Mpop_0354  pseudouridine synthase, RluA family  29.82 
 
 
446 aa  119  6e-26  Methylobacterium populi BJ001  Bacteria  normal  0.115819  normal 
 
 
-
 
NC_013385  Adeg_1604  pseudouridine synthase, RluA family  30.79 
 
 
331 aa  119  6e-26  Ammonifex degensii KC4  Bacteria  normal  0.357256  n/a   
 
 
-
 
NC_010501  PputW619_1517  RluA family pseudouridine synthase  31.07 
 
 
333 aa  119  7.999999999999999e-26  Pseudomonas putida W619  Bacteria  decreased coverage  0.0000147946  normal 
 
 
-
 
NC_007802  Jann_0624  ribosomal large subunit pseudouridine synthase C  28.87 
 
 
354 aa  119  9e-26  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2613  RluA family pseudouridine synthase  29 
 
 
343 aa  118  9.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_0480  RluA family pseudouridine synthase  30.82 
 
 
364 aa  118  9.999999999999999e-26  Psychrobacter sp. PRwf-1  Bacteria  normal  0.632369  normal 
 
 
-
 
NC_010505  Mrad2831_0857  RluA family pseudouridine synthase  30.18 
 
 
471 aa  118  9.999999999999999e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  decreased coverage  0.000295039 
 
 
-
 
NC_013739  Cwoe_3518  pseudouridine synthase, RluA family  31.97 
 
 
299 aa  118  9.999999999999999e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_1622  pseudouridine synthase, RluD  28.46 
 
 
363 aa  119  9.999999999999999e-26  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_14830  Pseudouridine synthase, RluC  31.6 
 
 
278 aa  118  9.999999999999999e-26  Azotobacter vinelandii DJ  Bacteria  normal  0.300608  n/a   
 
 
-
 
NC_008530  LGAS_1014  pseudouridylate synthase, 23S RNA-specific  30.93 
 
 
304 aa  118  9.999999999999999e-26  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000716198  normal 
 
 
-
 
NC_008639  Cpha266_1633  ribosomal large subunit pseudouridine synthase D  29.04 
 
 
350 aa  118  9.999999999999999e-26  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.784854  n/a   
 
 
-
 
NC_004116  SAG1365  ribosomal large subunit pseudouridine synthase D  30.07 
 
 
296 aa  117  1.9999999999999998e-25  Streptococcus agalactiae 2603V/R  Bacteria  hitchhiker  0.00766831  n/a   
 
 
-
 
NC_009718  Fnod_0824  RluA family pseudouridine synthase  32.11 
 
 
317 aa  118  1.9999999999999998e-25  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1019  RluA family pseudouridine synthase  30.5 
 
 
330 aa  117  1.9999999999999998e-25  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.798058 
 
 
-
 
NC_012791  Vapar_1379  pseudouridine synthase, RluA family  30.1 
 
 
370 aa  117  1.9999999999999998e-25  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3808  RluA family pseudouridine synthase  30.74 
 
 
333 aa  117  3e-25  Pseudomonas putida F1  Bacteria  normal  0.0127606  normal 
 
 
-
 
NC_009952  Dshi_0315  ribosomal large subunit pseudouridine synthase C  28.18 
 
 
348 aa  117  3e-25  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.458148 
 
 
-
 
NC_011071  Smal_2677  pseudouridine synthase, RluA family  31.06 
 
 
324 aa  117  3e-25  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.304816 
 
 
-
 
NC_011126  HY04AAS1_1520  pseudouridine synthase, RluA family  31.23 
 
 
308 aa  117  3e-25  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5281  RluA family pseudouridine synthase  31 
 
 
362 aa  117  3e-25  Delftia acidovorans SPH-1  Bacteria  normal  0.0773013  normal 
 
 
-
 
NC_008527  LACR_1082  ribosomal large subunit pseudouridine synthase D  30.49 
 
 
301 aa  117  3e-25  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.463864  n/a   
 
 
-
 
NC_007354  Ecaj_0540  ribosomal large subunit pseudouridine synthase D  30.42 
 
 
323 aa  116  3.9999999999999997e-25  Ehrlichia canis str. Jake  Bacteria  normal  0.373783  n/a   
 
 
-
 
NC_008752  Aave_1174  RluA family pseudouridine synthase  30.72 
 
 
399 aa  116  3.9999999999999997e-25  Acidovorax citrulli AAC00-1  Bacteria  normal  0.539633  normal 
 
 
-
 
NC_013730  Slin_4400  pseudouridine synthase  40.09 
 
 
248 aa  116  5e-25  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1813  pseudouridine synthase, RluA family  30.74 
 
 
303 aa  116  6e-25  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7584  pseudouridine synthase, RluA family  27.8 
 
 
337 aa  116  6e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0816319  n/a   
 
 
-
 
NC_009720  Xaut_4767  RluA family pseudouridine synthase  29.93 
 
 
364 aa  116  6e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  0.305838  hitchhiker  0.0012362 
 
 
-
 
NC_008340  Mlg_1429  ribosomal large subunit pseudouridine synthase C  28.04 
 
 
327 aa  115  6.9999999999999995e-25  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.550632 
 
 
-
 
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